Wall clock time and date at job start Wed Apr 1 2020 05:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.47144 * 2 1 4 4 O 1.45199 * 109.47291 * 239.99447 * 2 1 3 5 5 C 1.34749 * 116.99723 * 90.00568 * 4 2 1 6 6 O 1.21507 * 120.00031 * 359.97438 * 5 4 2 7 7 C 1.47462 * 120.00022 * 180.02562 * 5 4 2 8 8 C 1.39820 * 120.27372 * 359.97438 * 7 5 4 9 9 C 1.37438 * 120.19785 * 179.87586 * 8 7 5 10 10 C 1.39606 * 120.43659 * 0.06454 * 9 8 7 11 11 C 1.39199 * 119.11322 * 0.16775 * 10 9 8 12 12 C 1.37284 * 120.93910 * 359.37190 * 11 10 9 13 13 C 1.51685 * 106.99453 * 179.43960 * 11 10 9 14 14 C 1.54697 * 101.88955 * 344.47692 * 13 11 10 15 15 H 1.09006 * 110.74263 * 143.70982 * 14 13 11 16 16 C 1.53000 * 110.74283 * 267.04118 * 14 13 11 17 17 O 1.35986 * 129.71037 * 180.59985 * 10 9 8 18 18 C 1.50702 * 109.46740 * 119.99901 * 2 1 3 19 19 O 1.21283 * 120.00262 * 115.00252 * 18 2 1 20 20 N 1.34777 * 119.99928 * 294.72158 * 18 2 1 21 21 C 1.46506 * 120.00264 * 0.28128 * 20 18 2 22 22 C 1.46499 * 120.00199 * 180.27479 * 20 18 2 23 23 C 1.50697 * 109.46949 * 90.00203 * 22 20 18 24 24 H 1.08004 * 120.00186 * 0.02562 * 23 22 20 25 25 C 1.37881 * 120.00081 * 180.02562 * 23 22 20 26 26 N 1.31519 * 120.00096 * 0.02562 * 25 23 22 27 27 Si 1.86802 * 120.00103 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.46927 * 59.99717 * 27 25 23 29 29 H 1.48496 * 109.47287 * 179.97438 * 27 25 23 30 30 H 1.48501 * 109.47040 * 299.99940 * 27 25 23 31 31 H 1.09003 * 109.47144 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47390 * 300.00243 * 1 2 3 33 33 H 1.09003 * 109.46768 * 60.00330 * 1 2 3 34 34 H 1.08000 * 119.89639 * 359.84607 * 8 7 5 35 35 H 1.08004 * 119.77917 * 180.02562 * 9 8 7 36 36 H 1.08005 * 120.06917 * 180.59079 * 12 11 10 37 37 H 1.08997 * 110.94265 * 226.32300 * 13 11 10 38 38 H 1.09001 * 110.94269 * 102.62554 * 13 11 10 39 39 H 1.08998 * 109.47190 * 174.85556 * 16 14 13 40 40 H 1.09003 * 109.47378 * 294.85949 * 16 14 13 41 41 H 1.09004 * 109.46778 * 54.86157 * 16 14 13 42 42 H 1.08998 * 109.46921 * 89.99095 * 21 20 18 43 43 H 1.08994 * 109.46996 * 209.99677 * 21 20 18 44 44 H 1.09001 * 109.46578 * 329.99540 * 21 20 18 45 45 H 1.09001 * 109.47567 * 210.00057 * 22 20 18 46 46 H 1.09005 * 109.47076 * 330.00563 * 22 20 18 47 47 H 0.96991 * 119.99957 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0141 -0.6846 -1.1855 5 6 2.2181 0.0668 -2.2853 6 8 1.9971 1.2612 -2.2546 7 6 2.7085 -0.5607 -3.5264 8 6 2.9641 -1.9347 -3.5682 9 6 3.4187 -2.5184 -4.7265 10 6 3.6309 -1.7474 -5.8708 11 6 3.3794 -0.3792 -5.8219 12 6 2.9162 0.2127 -4.6730 13 6 3.7111 0.1818 -7.1916 14 6 4.5354 -0.9687 -7.8161 15 1 4.3264 -1.0588 -8.8822 16 6 6.0310 -0.7585 -7.5715 17 8 4.0606 -2.1240 -7.1048 18 6 2.0323 -0.7104 1.2305 19 8 2.6529 -1.7467 1.1217 20 7 1.7966 -0.1912 2.4517 21 6 1.0469 1.0606 2.5834 22 6 2.2900 -0.8786 3.6476 23 6 3.6727 -0.3794 3.9794 24 1 4.1372 0.3748 3.3615 25 6 4.3447 -0.8855 5.0719 26 7 3.7792 -1.8043 5.8240 27 14 6.0583 -0.2662 5.4836 28 1 6.0081 1.1958 5.7389 29 1 6.5585 -0.9630 6.6957 30 1 6.9702 -0.5386 4.3436 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 2.8043 -2.5390 -2.6875 35 1 3.6136 -3.5804 -4.7513 36 1 2.7167 1.2740 -4.6536 37 1 4.3098 1.0887 -7.1066 38 1 2.8039 0.3679 -7.7665 39 1 6.5842 -1.6230 -7.9384 40 1 6.3633 0.1359 -8.0986 41 1 6.2111 -0.6387 -6.5032 42 1 -0.0167 0.8394 2.6725 43 1 1.3830 1.5936 3.4727 44 1 1.2166 1.6800 1.7027 45 1 1.6208 -0.6779 4.4843 46 1 2.3264 -1.9519 3.4608 47 1 4.2518 -2.1601 6.5927 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850062580.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:22 Heat of formation + Delta-G solvation = -139.879265 kcal Electronic energy + Delta-G solvation = -30009.984500 eV Core-core repulsion = 25736.946254 eV Total energy + Delta-G solvation = -4273.038246 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.44983 -41.82720 -40.56095 -38.57342 -37.54950 -36.70835 -34.91361 -34.24869 -33.16999 -31.95460 -31.50257 -29.60889 -27.92978 -27.65320 -26.25083 -25.50656 -23.94762 -23.19706 -22.61162 -21.87319 -20.44776 -19.30829 -18.69890 -18.31425 -18.28672 -17.68604 -17.39982 -17.07891 -17.03378 -16.81893 -16.45311 -15.92230 -15.28203 -15.24659 -14.86295 -14.73879 -14.64230 -14.31011 -14.24564 -14.11416 -13.81193 -13.72252 -13.58120 -13.51185 -13.32413 -13.24769 -13.06984 -13.01101 -12.81687 -12.63413 -12.53011 -12.21418 -12.20051 -11.96264 -11.90807 -11.85363 -11.79709 -11.73642 -10.65605 -10.63461 -10.11537 -9.52980 -9.38249 -8.24551 -6.39084 -0.47956 0.16691 1.18645 1.32296 1.35824 1.39899 1.47188 1.61003 2.11428 2.29815 2.42343 2.57170 3.05302 3.32819 3.38508 3.44343 3.51635 3.72553 3.76494 3.83494 3.92672 4.00760 4.15599 4.25228 4.31878 4.38176 4.49359 4.60902 4.61188 4.68012 4.75588 4.76087 4.83177 4.88322 4.93908 4.98582 5.02834 5.08558 5.12348 5.16174 5.18719 5.22827 5.26570 5.37451 5.49994 5.77014 5.99761 6.02554 6.48276 6.61660 6.69204 7.19069 7.34717 8.82562 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.014328 B = 0.002265 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.746019 B =12356.809281 C =13356.869665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.080 3.920 3 H 0.116 0.884 4 O -0.338 6.338 5 C 0.514 3.486 6 O -0.527 6.527 7 C -0.175 4.175 8 C -0.026 4.026 9 C -0.157 4.157 10 C 0.141 3.859 11 C -0.191 4.191 12 C -0.004 4.004 13 C -0.100 4.100 14 C 0.070 3.930 15 H 0.148 0.852 16 C -0.173 4.173 17 O -0.307 6.307 18 C 0.500 3.500 19 O -0.577 6.577 20 N -0.599 5.599 21 C 0.068 3.932 22 C 0.261 3.739 23 C -0.547 4.547 24 H 0.051 0.949 25 C 0.010 3.990 26 N -0.925 5.925 27 Si 0.966 3.034 28 H -0.260 1.260 29 H -0.276 1.276 30 H -0.280 1.280 31 H 0.068 0.932 32 H 0.109 0.891 33 H 0.087 0.913 34 H 0.144 0.856 35 H 0.152 0.848 36 H 0.148 0.852 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.070 0.930 40 H 0.101 0.899 41 H 0.044 0.956 42 H 0.085 0.915 43 H 0.075 0.925 44 H 0.087 0.913 45 H 0.034 0.966 46 H 0.001 0.999 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.931 6.860 -28.741 29.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.021 3.979 3 H 0.133 0.867 4 O -0.254 6.254 5 C 0.361 3.639 6 O -0.418 6.418 7 C -0.177 4.177 8 C -0.044 4.044 9 C -0.176 4.176 10 C 0.094 3.906 11 C -0.192 4.192 12 C -0.022 4.022 13 C -0.136 4.136 14 C 0.015 3.985 15 H 0.166 0.834 16 C -0.230 4.230 17 O -0.221 6.221 18 C 0.287 3.713 19 O -0.457 6.457 20 N -0.331 5.331 21 C -0.074 4.074 22 C 0.140 3.860 23 C -0.586 4.586 24 H 0.069 0.931 25 C -0.190 4.190 26 N -0.565 5.565 27 Si 0.790 3.210 28 H -0.184 1.184 29 H -0.201 1.201 30 H -0.205 1.205 31 H 0.087 0.913 32 H 0.128 0.872 33 H 0.106 0.894 34 H 0.162 0.838 35 H 0.170 0.830 36 H 0.165 0.835 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.089 0.911 40 H 0.119 0.881 41 H 0.064 0.936 42 H 0.104 0.896 43 H 0.094 0.906 44 H 0.105 0.895 45 H 0.052 0.948 46 H 0.020 0.980 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.660 6.355 -28.683 29.606 hybrid contribution 0.922 0.026 0.987 1.351 sum -2.737 6.381 -27.696 28.553 Atomic orbital electron populations 1.22293 0.89126 1.04488 1.05929 1.22575 0.97929 0.96704 0.80649 0.86650 1.86653 1.77129 1.41744 1.19877 1.21373 0.73724 0.84866 0.83926 1.90776 1.50111 1.16253 1.84691 1.18887 1.12184 0.94970 0.91624 1.21296 0.91861 0.93263 0.97977 1.20409 1.06087 1.01744 0.89333 1.20109 0.91234 0.93171 0.86065 1.20937 1.06453 0.94440 0.97321 1.20360 0.92508 1.00486 0.88873 1.22014 1.02116 0.99698 0.89806 1.23870 0.94655 0.81537 0.98404 0.83410 1.22295 0.94079 1.04241 1.02388 1.86871 1.76290 1.36335 1.22600 1.20614 0.80142 0.85431 0.85133 1.90662 1.42198 1.26102 1.86735 1.48049 1.54055 1.25359 1.05664 1.22201 0.96535 0.84525 1.04098 1.18845 0.93797 0.91857 0.81527 1.21653 1.02133 1.23259 1.11524 0.93080 1.25829 1.02349 0.94942 0.95833 1.70028 1.39865 1.28978 1.17596 0.85496 0.78891 0.79136 0.77471 1.18442 1.20104 1.20543 0.91299 0.87220 0.89399 0.83783 0.82996 0.83451 0.86827 0.87018 0.91100 0.88063 0.93639 0.89637 0.90626 0.89485 0.94785 0.98050 0.92274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.97 9.28 71.98 0.67 -3.30 16 2 C 0.08 2.66 2.17 29.85 0.06 2.73 16 3 H 0.12 3.63 6.14 -2.39 -0.01 3.62 16 4 O -0.34 -11.90 8.68 -50.22 -0.44 -12.34 16 5 C 0.51 16.11 7.87 70.25 0.55 16.67 16 6 O -0.53 -17.22 15.62 19.81 0.31 -16.91 16 7 C -0.18 -4.63 5.88 -20.07 -0.12 -4.75 16 8 C -0.03 -0.64 9.59 22.46 0.22 -0.42 16 9 C -0.16 -3.35 10.04 22.41 0.23 -3.12 16 10 C 0.14 2.82 6.95 22.83 0.16 2.98 16 11 C -0.19 -3.43 6.25 -19.54 -0.12 -3.55 16 12 C 0.00 -0.09 9.58 22.44 0.21 0.13 16 13 C -0.10 -0.98 6.65 30.74 0.20 -0.77 16 14 C 0.07 0.69 4.31 31.17 0.13 0.82 16 15 H 0.15 0.60 8.14 -2.38 -0.02 0.58 16 16 C -0.17 -1.57 9.49 71.98 0.68 -0.88 16 17 O -0.31 -5.40 10.81 -93.40 -1.01 -6.41 16 18 C 0.50 22.09 7.10 87.66 0.62 22.71 16 19 O -0.58 -31.61 16.09 15.71 0.25 -31.36 16 20 N -0.60 -25.77 2.86 -851.12 -2.43 -28.20 16 21 C 0.07 2.00 8.93 127.77 1.14 3.14 16 22 C 0.26 14.09 5.16 85.63 0.44 14.53 16 23 C -0.55 -31.86 9.39 25.60 0.24 -31.62 16 24 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 25 C 0.01 0.57 5.46 84.66 0.46 1.03 16 26 N -0.93 -55.97 13.29 21.45 0.28 -55.69 16 27 Si 0.97 45.30 29.54 68.60 2.03 47.33 16 28 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 29 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 30 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 31 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.11 2.21 5.14 -2.39 -0.01 2.19 16 33 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.14 3.75 7.61 -2.91 -0.02 3.72 16 35 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 36 H 0.15 2.87 7.66 -2.91 -0.02 2.85 16 37 H 0.11 0.75 7.92 -2.39 -0.02 0.73 16 38 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.07 0.64 8.14 -2.39 -0.02 0.63 16 40 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 41 H 0.04 0.60 8.12 -2.39 -0.02 0.59 16 42 H 0.09 1.95 7.04 -2.39 -0.02 1.94 16 43 H 0.07 2.30 8.07 -2.39 -0.02 2.28 16 44 H 0.09 2.08 6.06 -2.39 -0.01 2.07 16 45 H 0.03 1.83 8.07 -2.39 -0.02 1.81 16 46 H 0.00 0.09 7.42 -2.38 -0.02 0.07 16 47 H 0.27 15.23 8.31 -92.72 -0.77 14.46 16 Total: -1.00 -80.12 394.58 5.78 -74.34 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: 0.99 Total: 12.92 kcal Atomic # 6 Polarization: 10.52 SS G_CDS: 5.79 Total: 16.31 kcal Atomic # 7 Polarization: -81.74 SS G_CDS: -2.15 Total: -83.88 kcal Atomic # 8 Polarization: -66.14 SS G_CDS: -0.88 Total: -67.02 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -80.12 5.78 -74.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850062580.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.538 kcal (2) G-P(sol) polarization free energy of solvation -80.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds