Wall clock time and date at job start Wed Apr 1 2020 05:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 110.27375 * 2 1 4 4 C 1.55496 * 110.36751 * 237.89444 * 2 1 3 5 5 C 1.55304 * 100.69265 * 204.61007 * 4 2 1 6 6 H 1.09001 * 110.84773 * 275.82781 * 5 4 2 7 7 C 1.50706 * 110.85011 * 152.41672 * 5 4 2 8 8 O 1.20819 * 120.00245 * 244.16924 * 7 5 4 9 9 O 1.34233 * 119.99676 * 64.16838 * 7 5 4 10 10 C 1.45203 * 116.99811 * 179.97438 * 9 7 5 11 11 C 1.50694 * 109.47109 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00241 * 354.98760 * 11 10 9 13 13 N 1.34772 * 120.00085 * 174.98929 * 11 10 9 14 14 C 1.37136 * 120.00013 * 6.00567 * 13 11 10 15 15 H 1.08001 * 120.00301 * 53.61934 * 14 13 11 16 16 C 1.38896 * 119.99899 * 233.62327 * 14 13 11 17 17 N 1.31417 * 120.00398 * 5.46821 * 16 14 13 18 18 Si 1.86801 * 119.99829 * 185.46296 * 16 14 13 19 19 H 1.48510 * 109.46964 * 90.00310 * 18 16 14 20 20 H 1.48501 * 109.47074 * 210.00153 * 18 16 14 21 21 H 1.48497 * 109.47348 * 330.00544 * 18 16 14 22 22 C 1.39794 * 120.00143 * 186.00319 * 13 11 10 23 23 C 1.38954 * 120.07605 * 8.28231 * 22 13 11 24 24 C 1.38089 * 119.92022 * 179.74374 * 23 22 13 25 25 C 1.38309 * 120.07636 * 0.55945 * 24 23 22 26 26 C 1.38313 * 120.15889 * 359.69502 * 25 24 23 27 27 C 1.38085 * 120.07377 * 0.02562 * 26 25 24 28 28 C 1.54382 * 102.43943 * 34.12522 * 5 4 2 29 29 H 1.08998 * 109.82735 * 98.15040 * 28 5 4 30 30 C 1.53002 * 109.82820 * 219.02956 * 28 5 4 31 31 O 1.43230 * 107.58555 * 338.54182 * 28 5 4 32 32 H 1.09000 * 109.47036 * 299.36797 * 1 2 3 33 33 H 1.08998 * 109.46837 * 59.36103 * 1 2 3 34 34 H 1.08997 * 109.46700 * 179.36102 * 1 2 3 35 35 H 1.08994 * 111.33747 * 86.73569 * 4 2 1 36 36 H 1.09002 * 111.14470 * 322.39768 * 4 2 1 37 37 H 1.08997 * 109.47199 * 300.00576 * 10 9 7 38 38 H 1.09003 * 109.46860 * 59.99924 * 10 9 7 39 39 H 0.96998 * 120.00396 * 184.99743 * 17 16 14 40 40 H 1.07998 * 120.04068 * 359.97438 * 23 22 13 41 41 H 1.07998 * 119.96307 * 180.29381 * 24 23 22 42 42 H 1.07998 * 119.92405 * 179.72394 * 25 24 23 43 43 H 1.07996 * 119.96459 * 180.02562 * 26 25 24 44 44 H 1.08001 * 120.03792 * 180.02562 * 27 26 25 45 45 H 1.09001 * 109.47300 * 60.00060 * 30 28 5 46 46 H 1.09004 * 109.46733 * 180.02562 * 30 28 5 47 47 H 1.09001 * 109.47191 * 299.99777 * 30 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0712 -0.7748 -1.2348 5 6 3.4722 -1.2000 -0.7168 6 1 4.1988 -0.4006 -0.8626 7 6 3.9310 -2.4678 -1.3903 8 8 4.0961 -3.4721 -0.7392 9 8 4.1562 -2.4811 -2.7135 10 6 4.5969 -3.7368 -3.2945 11 6 4.7978 -3.5609 -4.7776 12 8 4.5038 -2.5111 -5.3092 13 7 5.3041 -4.5701 -5.5135 14 6 5.5212 -5.7960 -4.9385 15 1 4.7194 -6.2975 -4.4170 16 6 6.7723 -6.3927 -5.0268 17 7 7.7760 -5.7380 -5.5662 18 14 7.0284 -8.1258 -4.3785 19 1 6.7599 -9.1045 -5.4628 20 1 8.4296 -8.2773 -3.9107 21 1 6.0991 -8.3734 -3.2470 22 6 5.6080 -4.3673 -6.8628 23 6 5.5529 -3.0888 -7.4045 24 6 5.8588 -2.8914 -8.7365 25 6 6.2085 -3.9659 -9.5340 26 6 6.2593 -5.2406 -8.9995 27 6 5.9602 -5.4445 -7.6669 28 6 3.2126 -1.4393 0.7861 29 1 3.0667 -2.5035 0.9712 30 6 4.3991 -0.9279 1.6056 31 8 2.0287 -0.7156 1.1413 32 1 -0.3633 0.5040 0.8956 33 1 -0.3633 0.5237 -0.8842 34 1 -0.3632 -1.0276 -0.0115 35 1 2.1550 -0.1245 -2.1055 36 1 1.4530 -1.6451 -1.4548 37 1 5.5372 -4.0399 -2.8343 38 1 3.8423 -4.5033 -3.1181 39 1 8.6303 -6.1794 -5.6940 40 1 5.2747 -2.2501 -6.7836 41 1 5.8208 -1.8974 -9.1571 42 1 6.4430 -3.8093 -10.5766 43 1 6.5331 -6.0773 -9.6250 44 1 6.0004 -6.4400 -7.2500 45 1 4.5300 0.1396 1.4283 46 1 4.2099 -1.1000 2.6652 47 1 5.3028 -1.4593 1.3072 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869656866.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:00 Heat of formation + Delta-G solvation = -139.078193 kcal Electronic energy + Delta-G solvation = -30781.919854 eV Core-core repulsion = 26508.916345 eV Total energy + Delta-G solvation = -4273.003509 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.15966 -41.47612 -40.31308 -38.98009 -37.58605 -36.87196 -33.86379 -33.84694 -33.65141 -31.53344 -31.32065 -30.01617 -28.96423 -27.12407 -25.96649 -23.99333 -23.36808 -22.91183 -22.26618 -21.38887 -21.06917 -19.71817 -19.18033 -18.09086 -17.85635 -17.77784 -17.44804 -17.29724 -16.89714 -16.33696 -16.12483 -15.84460 -15.42815 -15.14557 -14.90219 -14.78227 -14.57250 -14.28856 -14.04053 -13.99630 -13.87154 -13.68607 -13.50766 -13.34276 -13.26860 -13.05426 -12.83558 -12.79145 -12.71590 -12.47922 -12.27546 -12.14190 -11.98982 -11.92394 -11.91077 -11.75310 -11.55680 -11.13772 -10.67025 -10.54018 -10.17644 -9.54797 -8.79497 -8.21228 -6.52217 0.62229 0.79897 0.95528 1.18750 1.39141 1.43779 1.53967 1.83528 2.20671 2.57594 2.74247 2.87154 3.23927 3.33847 3.46102 3.57500 3.79157 3.88061 3.94375 4.08704 4.13856 4.21727 4.31980 4.32000 4.34807 4.40857 4.49827 4.58207 4.63666 4.74981 4.82180 4.89754 4.90522 4.96170 5.03262 5.08746 5.15483 5.20571 5.24116 5.29419 5.30825 5.39188 5.75547 5.82069 5.86541 5.97165 6.00234 6.18817 6.47367 6.56309 6.90059 7.25426 7.63630 8.58185 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.013005 B = 0.002908 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.423886 B = 9625.639757 C =11200.124287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.074 3.926 3 H 0.096 0.904 4 C -0.137 4.137 5 C -0.111 4.111 6 H 0.146 0.854 7 C 0.471 3.529 8 O -0.527 6.527 9 O -0.340 6.340 10 C 0.083 3.917 11 C 0.480 3.520 12 O -0.568 6.568 13 N -0.389 5.389 14 C -0.394 4.394 15 H 0.101 0.899 16 C 0.028 3.972 17 N -0.870 5.870 18 Si 0.979 3.021 19 H -0.264 1.264 20 H -0.281 1.281 21 H -0.257 1.257 22 C 0.162 3.838 23 C -0.206 4.206 24 C -0.116 4.116 25 C -0.163 4.163 26 C -0.119 4.119 27 C -0.123 4.123 28 C 0.091 3.909 29 H 0.078 0.922 30 C -0.158 4.158 31 O -0.384 6.384 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.053 0.947 35 H 0.114 0.886 36 H 0.075 0.925 37 H 0.097 0.903 38 H 0.103 0.897 39 H 0.277 0.723 40 H 0.149 0.851 41 H 0.137 0.863 42 H 0.144 0.856 43 H 0.136 0.864 44 H 0.110 0.890 45 H 0.077 0.923 46 H 0.072 0.928 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.367 7.963 6.461 12.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.018 3.982 3 H 0.114 0.886 4 C -0.175 4.175 5 C -0.130 4.130 6 H 0.164 0.836 7 C 0.315 3.685 8 O -0.416 6.416 9 O -0.256 6.256 10 C 0.007 3.993 11 C 0.271 3.729 12 O -0.452 6.452 13 N -0.098 5.098 14 C -0.520 4.520 15 H 0.119 0.881 16 C -0.180 4.180 17 N -0.502 5.502 18 Si 0.802 3.198 19 H -0.189 1.189 20 H -0.206 1.206 21 H -0.181 1.181 22 C 0.066 3.934 23 C -0.225 4.225 24 C -0.135 4.135 25 C -0.182 4.182 26 C -0.137 4.137 27 C -0.144 4.144 28 C 0.033 3.967 29 H 0.096 0.904 30 C -0.215 4.215 31 O -0.305 6.305 32 H 0.089 0.911 33 H 0.108 0.892 34 H 0.072 0.928 35 H 0.132 0.868 36 H 0.093 0.907 37 H 0.115 0.885 38 H 0.121 0.879 39 H 0.087 0.913 40 H 0.166 0.834 41 H 0.155 0.845 42 H 0.162 0.838 43 H 0.154 0.846 44 H 0.128 0.872 45 H 0.096 0.904 46 H 0.091 0.909 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.335 8.159 6.672 12.841 hybrid contribution 0.792 -1.417 0.090 1.626 sum -6.544 6.742 6.761 11.575 Atomic orbital electron populations 1.21912 0.92307 1.02808 1.03722 1.23285 0.96079 0.95995 0.82857 0.88593 1.23485 0.91809 1.01860 1.00339 1.22784 1.01622 0.93315 0.95315 0.83633 1.23901 0.73311 0.91187 0.80137 1.90658 1.48980 1.36542 1.65466 1.86492 1.77368 1.37486 1.24220 1.22339 1.02328 0.83849 0.90781 1.20669 0.80311 0.83157 0.88733 1.90310 1.53934 1.28543 1.72435 1.41058 1.52671 1.10339 1.05764 1.19703 0.97225 0.95958 1.39141 0.88112 1.26342 0.93944 1.03055 0.94696 1.70063 1.02790 1.37862 1.39472 0.85128 0.77944 0.77372 0.79396 1.18912 1.20646 1.18109 1.18489 0.96722 0.94133 0.84039 1.22383 1.05309 0.97252 0.97597 1.21223 0.99406 0.99724 0.93102 1.21229 1.03916 0.92393 1.00613 1.21141 1.00337 0.98124 0.94139 1.20802 1.02047 0.97973 0.93565 1.22592 0.86729 0.97106 0.90240 0.90366 1.22113 0.96058 1.02445 1.00873 1.88458 1.41806 1.65236 1.34978 0.91139 0.89183 0.92812 0.86762 0.90661 0.88512 0.87866 0.91332 0.83394 0.84532 0.83818 0.84620 0.87174 0.90446 0.90948 0.91583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.63 71.98 0.69 -1.46 16 2 C 0.07 1.28 4.08 31.45 0.13 1.40 16 3 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 4 C -0.14 -2.70 6.06 32.25 0.20 -2.51 16 5 C -0.11 -2.57 3.01 -10.28 -0.03 -2.60 16 6 H 0.15 2.73 7.85 -2.39 -0.02 2.71 16 7 C 0.47 15.10 7.27 71.24 0.52 15.62 16 8 O -0.53 -19.29 15.19 21.98 0.33 -18.96 16 9 O -0.34 -12.71 9.76 -45.10 -0.44 -13.15 16 10 C 0.08 3.45 4.77 71.23 0.34 3.79 16 11 C 0.48 23.20 7.61 87.66 0.67 23.87 16 12 O -0.57 -28.76 13.03 15.71 0.20 -28.56 16 13 N -0.39 -19.65 2.66 -458.90 -1.22 -20.87 16 14 C -0.39 -19.23 7.40 84.02 0.62 -18.61 16 15 H 0.10 4.65 7.78 -2.91 -0.02 4.63 16 16 C 0.03 1.33 3.85 84.91 0.33 1.66 16 17 N -0.87 -44.89 11.62 21.65 0.25 -44.64 16 18 Si 0.98 37.70 29.56 68.60 2.03 39.73 16 19 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 20 H -0.28 -10.86 7.11 99.48 0.71 -10.15 16 21 H -0.26 -9.56 7.11 99.48 0.71 -8.86 16 22 C 0.16 8.12 5.71 38.22 0.22 8.34 16 23 C -0.21 -9.74 8.96 22.41 0.20 -9.54 16 24 C -0.12 -4.54 10.04 22.25 0.22 -4.31 16 25 C -0.16 -5.80 10.04 22.30 0.22 -5.58 16 26 C -0.12 -4.62 10.04 22.25 0.22 -4.39 16 27 C -0.12 -5.74 7.86 22.41 0.18 -5.56 16 28 C 0.09 2.10 3.59 31.06 0.11 2.21 16 29 H 0.08 2.15 6.82 -2.39 -0.02 2.13 16 30 C -0.16 -2.99 9.44 71.98 0.68 -2.32 16 31 O -0.38 -8.65 10.70 -148.98 -1.59 -10.25 16 32 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.07 1.65 7.96 -2.39 -0.02 1.63 16 37 H 0.10 4.12 8.04 -2.39 -0.02 4.10 16 38 H 0.10 4.00 8.07 -2.39 -0.02 3.98 16 39 H 0.28 13.51 8.32 -92.71 -0.77 12.74 16 40 H 0.15 7.44 4.75 -42.83 -0.20 7.24 16 41 H 0.14 4.39 8.06 -2.91 -0.02 4.37 16 42 H 0.14 3.93 8.06 -2.91 -0.02 3.91 16 43 H 0.14 4.35 8.06 -2.91 -0.02 4.33 16 44 H 0.11 5.32 6.02 -2.91 -0.02 5.30 16 45 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 47 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -63.93 388.12 5.87 -58.07 By element: Atomic # 1 Polarization: 37.83 SS G_CDS: 0.79 Total: 38.62 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: 5.52 Total: 0.00 kcal Atomic # 7 Polarization: -64.54 SS G_CDS: -0.97 Total: -65.51 kcal Atomic # 8 Polarization: -69.41 SS G_CDS: -1.50 Total: -70.91 kcal Atomic # 14 Polarization: 37.70 SS G_CDS: 2.03 Total: 39.73 kcal Total: -63.93 5.87 -58.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869656866.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.013 kcal (2) G-P(sol) polarization free energy of solvation -63.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds