Wall clock time and date at job start Wed Apr 1 2020 05:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 110.33442 * 2 1 4 4 C 1.54476 * 110.36964 * 237.74454 * 2 1 3 5 5 C 1.54505 * 104.06491 * 265.03840 * 4 2 1 6 6 H 1.09003 * 110.51230 * 118.78734 * 5 4 2 7 7 C 1.50698 * 110.51481 * 241.35480 * 5 4 2 8 8 O 1.20823 * 119.99666 * 25.82147 * 7 5 4 9 9 O 1.34232 * 120.00354 * 205.81952 * 7 5 4 10 10 C 1.45200 * 117.00125 * 180.02562 * 9 7 5 11 11 C 1.50699 * 109.47315 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99586 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00140 * 179.97438 * 11 10 9 14 14 C 1.37146 * 119.99610 * 4.94801 * 13 11 10 15 15 H 1.07996 * 120.00099 * 19.67889 * 14 13 11 16 16 C 1.38887 * 119.99636 * 199.67336 * 14 13 11 17 17 N 1.31425 * 120.00131 * 12.87571 * 16 14 13 18 18 Si 1.86796 * 120.00180 * 192.87467 * 16 14 13 19 19 H 1.48502 * 109.47363 * 89.99875 * 18 16 14 20 20 H 1.48503 * 109.47217 * 210.00277 * 18 16 14 21 21 H 1.48503 * 109.46798 * 330.00055 * 18 16 14 22 22 C 1.39790 * 120.00034 * 184.94407 * 13 11 10 23 23 C 1.38961 * 120.07312 * 68.64055 * 22 13 11 24 24 C 1.38078 * 119.91804 * 179.97438 * 23 22 13 25 25 C 1.38308 * 120.08242 * 359.97438 * 24 23 22 26 26 C 1.38309 * 120.15202 * 359.97438 * 25 24 23 27 27 C 1.38088 * 120.07857 * 0.02562 * 26 25 24 28 28 C 1.54480 * 104.06422 * 0.02562 * 5 4 2 29 29 H 1.09000 * 110.37069 * 94.85332 * 28 5 4 30 30 C 1.53001 * 110.37338 * 217.18838 * 28 5 4 31 31 O 1.44419 * 104.79929 * 336.02085 * 28 5 4 32 32 H 1.08996 * 109.47005 * 182.25432 * 1 2 3 33 33 H 1.09000 * 109.46615 * 302.25444 * 1 2 3 34 34 H 1.08995 * 109.46685 * 62.24632 * 1 2 3 35 35 H 1.09000 * 110.51033 * 146.39490 * 4 2 1 36 36 H 1.08998 * 110.51478 * 23.68844 * 4 2 1 37 37 H 1.09001 * 109.47094 * 59.99643 * 10 9 7 38 38 H 1.09007 * 109.46906 * 300.00024 * 10 9 7 39 39 H 0.97000 * 120.00454 * 184.98045 * 17 16 14 40 40 H 1.07997 * 120.03782 * 359.97438 * 23 22 13 41 41 H 1.08005 * 119.95929 * 180.02562 * 24 23 22 42 42 H 1.07998 * 119.92883 * 179.72445 * 25 24 23 43 43 H 1.07999 * 119.96065 * 179.97438 * 26 25 24 44 44 H 1.07999 * 120.03937 * 180.02562 * 27 26 25 45 45 H 1.09003 * 109.46930 * 65.16467 * 30 28 5 46 46 H 1.08992 * 109.47157 * 185.16905 * 30 28 5 47 47 H 1.08998 * 109.47176 * 305.17145 * 30 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9088 1.0220 0.0000 4 6 2.0678 -0.7729 -1.2247 5 6 2.3200 -2.1994 -0.6873 6 1 1.7030 -2.9229 -1.2202 7 6 3.7781 -2.5596 -0.8095 8 8 4.6164 -1.6895 -0.8211 9 8 4.1457 -3.8470 -0.9055 10 6 5.5673 -4.1199 -1.0198 11 6 5.7870 -5.6077 -1.1169 12 8 4.8388 -6.3635 -1.0918 13 7 7.0371 -6.0982 -1.2317 14 6 8.1147 -5.2531 -1.1582 15 1 8.0073 -4.2794 -0.7035 16 6 9.3441 -5.6495 -1.6684 17 7 9.4243 -6.7110 -2.4392 18 14 10.8837 -4.6741 -1.2591 19 1 11.5007 -5.2186 -0.0229 20 1 11.8495 -4.7792 -2.3822 21 1 10.5247 -3.2488 -1.0467 22 6 7.2352 -7.4683 -1.4257 23 6 6.8580 -8.0638 -2.6232 24 6 7.0556 -9.4173 -2.8116 25 6 7.6288 -10.1802 -1.8103 26 6 8.0064 -9.5905 -0.6176 27 6 7.8117 -8.2375 -0.4223 28 6 1.9042 -2.1198 0.7983 29 1 0.8717 -2.4467 0.9214 30 6 2.8397 -2.9707 1.6596 31 8 2.0341 -0.7235 1.1435 32 1 -0.3633 -1.0268 0.0404 33 1 -0.3632 0.5485 0.8691 34 1 -0.3632 0.4785 -0.9094 35 1 2.9978 -0.3282 -1.5787 36 1 1.3243 -0.7908 -2.0216 37 1 6.0834 -3.7326 -0.1413 38 1 5.9594 -3.6359 -1.9143 39 1 10.2907 -7.0302 -2.7365 40 1 6.4107 -7.4687 -3.4056 41 1 6.7631 -9.8808 -3.7422 42 1 7.7781 -11.2395 -1.9586 43 1 8.4533 -10.1892 0.1623 44 1 8.1072 -7.7776 0.5092 45 1 3.8448 -2.5499 1.6291 46 1 2.4800 -2.9782 2.6884 47 1 2.8610 -3.9902 1.2746 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869656867.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:04 Heat of formation + Delta-G solvation = -126.984052 kcal Electronic energy + Delta-G solvation = -31080.576857 eV Core-core repulsion = 26808.097789 eV Total energy + Delta-G solvation = -4272.479067 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.00600 -39.61179 -39.01903 -37.32135 -35.99468 -34.81845 -32.87679 -32.59970 -31.79609 -29.92775 -29.69728 -29.07539 -27.54477 -25.20297 -25.00737 -23.15633 -21.67981 -21.49313 -21.16010 -19.85545 -19.40593 -18.01684 -17.75899 -16.76185 -16.52169 -16.08732 -15.86765 -15.53765 -15.30142 -15.16708 -14.82435 -14.49122 -14.35890 -13.81487 -13.61113 -13.45733 -13.05621 -12.90759 -12.63348 -12.48592 -12.36419 -12.22288 -12.17764 -12.07618 -11.92951 -11.65831 -11.55593 -11.22342 -11.19041 -11.10990 -11.01576 -11.01048 -10.60039 -10.42835 -10.36235 -10.35343 -10.23958 -9.85446 -9.49822 -8.74544 -8.35983 -7.90160 -7.55502 -6.34744 -4.20533 2.33237 2.39053 2.45638 2.72014 3.03440 3.15303 3.16857 3.56103 3.62695 3.95293 4.19216 4.36823 4.47228 4.69213 4.76489 4.76497 4.93580 5.02591 5.03847 5.12796 5.19814 5.23264 5.29286 5.51011 5.63090 5.67766 5.73514 5.75377 5.76623 5.77271 5.83181 5.85385 5.89473 5.96521 5.98973 6.15950 6.37574 6.51604 6.65856 6.70114 6.75373 6.99211 7.18805 7.29009 7.41416 7.51167 7.67934 7.90981 7.95232 8.30340 8.85577 9.17104 9.59161 10.49629 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.014673 B = 0.002875 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.849974 B = 9738.062663 C =10881.608995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.072 3.928 3 H 0.104 0.896 4 C -0.142 4.142 5 C -0.116 4.116 6 H 0.118 0.882 7 C 0.471 3.529 8 O -0.504 6.504 9 O -0.332 6.332 10 C 0.072 3.928 11 C 0.467 3.533 12 O -0.573 6.573 13 N -0.404 5.404 14 C -0.363 4.363 15 H 0.102 0.898 16 C 0.049 3.951 17 N -0.841 5.841 18 Si 0.920 3.080 19 H -0.275 1.275 20 H -0.281 1.281 21 H -0.267 1.267 22 C 0.241 3.759 23 C -0.085 4.085 24 C -0.117 4.117 25 C -0.149 4.149 26 C -0.119 4.119 27 C -0.118 4.118 28 C 0.089 3.911 29 H 0.087 0.913 30 C -0.163 4.163 31 O -0.359 6.359 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.274 0.726 40 H 0.105 0.895 41 H 0.107 0.893 42 H 0.105 0.895 43 H 0.107 0.893 44 H 0.109 0.891 45 H 0.065 0.935 46 H 0.070 0.930 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.539 6.433 2.403 13.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.014 3.986 3 H 0.122 0.878 4 C -0.179 4.179 5 C -0.136 4.136 6 H 0.136 0.864 7 C 0.313 3.687 8 O -0.392 6.392 9 O -0.247 6.247 10 C -0.005 4.005 11 C 0.256 3.744 12 O -0.456 6.456 13 N -0.121 5.121 14 C -0.488 4.488 15 H 0.120 0.880 16 C -0.160 4.160 17 N -0.475 5.475 18 Si 0.745 3.255 19 H -0.200 1.200 20 H -0.207 1.207 21 H -0.191 1.191 22 C 0.150 3.850 23 C -0.104 4.104 24 C -0.136 4.136 25 C -0.167 4.167 26 C -0.138 4.138 27 C -0.138 4.138 28 C 0.031 3.969 29 H 0.104 0.896 30 C -0.220 4.220 31 O -0.279 6.279 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.114 0.886 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.114 0.886 39 H 0.085 0.915 40 H 0.123 0.877 41 H 0.125 0.875 42 H 0.123 0.877 43 H 0.125 0.875 44 H 0.127 0.873 45 H 0.084 0.916 46 H 0.089 0.911 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -11.483 6.324 2.433 13.333 hybrid contribution 1.286 0.480 -0.181 1.385 sum -10.197 6.804 2.252 12.464 Atomic orbital electron populations 1.22317 0.95431 1.02789 1.02686 1.22981 0.93640 0.97187 0.84795 0.87798 1.23106 1.03695 0.92437 0.98688 1.22480 0.91325 0.99823 0.99950 0.86388 1.23143 0.91934 0.81061 0.72532 1.90654 1.53162 1.49800 1.45628 1.86508 1.28483 1.27241 1.82470 1.22635 0.77346 0.96249 1.04249 1.19572 0.83041 0.88605 0.83172 1.90619 1.40816 1.59269 1.54941 1.41171 1.04595 1.04183 1.62192 1.19647 0.88232 1.00338 1.40602 0.87995 1.25276 0.99691 0.97109 0.93881 1.69915 1.25971 1.23266 1.28378 0.86029 0.81055 0.80045 0.78328 1.20028 1.20658 1.19148 1.17099 0.93157 0.82571 0.92123 1.20776 0.99721 0.94358 0.95547 1.20679 1.00759 0.93785 0.98341 1.20737 1.02697 0.98600 0.94683 1.20675 1.01415 0.94447 0.97238 1.20906 1.00992 0.93388 0.98534 1.22877 0.99797 0.83666 0.90537 0.89572 1.22029 0.99492 1.00070 1.00367 1.89229 1.84059 1.16384 1.38188 0.92043 0.91703 0.91315 0.88586 0.89356 0.89134 0.88551 0.91468 0.87728 0.87494 0.87702 0.87536 0.87308 0.91640 0.91129 0.89432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.26 9.32 37.16 0.35 -0.92 16 2 C 0.07 0.70 4.21 -25.95 -0.11 0.59 16 3 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 4 C -0.14 -1.45 6.15 -25.17 -0.15 -1.61 16 5 C -0.12 -1.41 3.54 -90.21 -0.32 -1.73 16 6 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 7 C 0.47 7.73 5.08 36.00 0.18 7.92 16 8 O -0.50 -9.40 15.41 -18.75 -0.29 -9.69 16 9 O -0.33 -6.23 9.09 -45.91 -0.42 -6.65 16 10 C 0.07 1.46 4.54 36.01 0.16 1.62 16 11 C 0.47 11.14 7.57 -10.99 -0.08 11.05 16 12 O -0.57 -14.90 16.29 -14.11 -0.23 -15.13 16 13 N -0.40 -9.98 2.68 -58.98 -0.16 -10.14 16 14 C -0.36 -8.84 9.01 -14.93 -0.13 -8.98 16 15 H 0.10 2.34 6.52 -52.49 -0.34 2.00 16 16 C 0.05 1.20 5.15 -17.49 -0.09 1.11 16 17 N -0.84 -21.28 10.59 55.49 0.59 -20.69 16 18 Si 0.92 19.05 29.57 -169.99 -5.03 14.02 16 19 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 20 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 21 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 22 C 0.24 5.90 2.49 -83.70 -0.21 5.69 16 23 C -0.08 -1.98 8.92 -39.37 -0.35 -2.33 16 24 C -0.12 -2.37 10.04 -39.61 -0.40 -2.76 16 25 C -0.15 -2.82 10.04 -39.53 -0.40 -3.22 16 26 C -0.12 -2.36 10.04 -39.61 -0.40 -2.76 16 27 C -0.12 -2.69 9.36 -39.37 -0.37 -3.06 16 28 C 0.09 1.04 3.41 -25.95 -0.09 0.95 16 29 H 0.09 0.80 7.24 -51.93 -0.38 0.42 16 30 C -0.16 -2.09 8.51 37.16 0.32 -1.77 16 31 O -0.36 -4.62 11.10 -35.23 -0.39 -5.01 16 32 H 0.06 0.43 6.95 -51.93 -0.36 0.07 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.10 1.15 6.83 -51.93 -0.35 0.80 16 36 H 0.09 0.67 7.87 -51.93 -0.41 0.26 16 37 H 0.09 1.76 7.49 -51.93 -0.39 1.37 16 38 H 0.10 1.93 8.13 -51.92 -0.42 1.51 16 39 H 0.27 6.68 8.32 -40.82 -0.34 6.34 16 40 H 0.10 2.48 8.06 -52.49 -0.42 2.06 16 41 H 0.11 1.84 8.06 -52.48 -0.42 1.42 16 42 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 43 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 44 H 0.11 2.42 8.06 -52.49 -0.42 2.00 16 45 H 0.06 0.98 7.29 -51.93 -0.38 0.60 16 46 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.09 1.18 7.56 -51.93 -0.39 0.78 16 LS Contribution 388.62 15.07 5.86 5.86 Total: -1.00 -30.60 388.62 -8.95 -39.54 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -6.79 Total: 8.08 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -2.09 Total: -0.21 kcal Atomic # 7 Polarization: -31.26 SS G_CDS: 0.43 Total: -30.83 kcal Atomic # 8 Polarization: -35.15 SS G_CDS: -1.33 Total: -36.47 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.03 Total: 14.02 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.60 -8.95 -39.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869656867.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.442 kcal (2) G-P(sol) polarization free energy of solvation -30.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds