Wall clock time and date at job start Wed Apr 1 2020 05:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 110.33442 * 2 1 4 4 C 1.54476 * 110.36964 * 237.74454 * 2 1 3 5 5 C 1.54505 * 104.06491 * 265.03840 * 4 2 1 6 6 H 1.09003 * 110.51230 * 118.78734 * 5 4 2 7 7 C 1.50698 * 110.51481 * 241.35480 * 5 4 2 8 8 O 1.20823 * 119.99666 * 25.82147 * 7 5 4 9 9 O 1.34232 * 120.00354 * 205.81952 * 7 5 4 10 10 C 1.45200 * 117.00125 * 180.02562 * 9 7 5 11 11 C 1.50699 * 109.47315 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99586 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00140 * 179.97438 * 11 10 9 14 14 C 1.37146 * 119.99610 * 4.94801 * 13 11 10 15 15 H 1.07996 * 120.00099 * 19.67889 * 14 13 11 16 16 C 1.38887 * 119.99636 * 199.67336 * 14 13 11 17 17 N 1.31425 * 120.00131 * 12.87571 * 16 14 13 18 18 Si 1.86796 * 120.00180 * 192.87467 * 16 14 13 19 19 H 1.48502 * 109.47363 * 89.99875 * 18 16 14 20 20 H 1.48503 * 109.47217 * 210.00277 * 18 16 14 21 21 H 1.48503 * 109.46798 * 330.00055 * 18 16 14 22 22 C 1.39790 * 120.00034 * 184.94407 * 13 11 10 23 23 C 1.38961 * 120.07312 * 68.64055 * 22 13 11 24 24 C 1.38078 * 119.91804 * 179.97438 * 23 22 13 25 25 C 1.38308 * 120.08242 * 359.97438 * 24 23 22 26 26 C 1.38309 * 120.15202 * 359.97438 * 25 24 23 27 27 C 1.38088 * 120.07857 * 0.02562 * 26 25 24 28 28 C 1.54480 * 104.06422 * 0.02562 * 5 4 2 29 29 H 1.09000 * 110.37069 * 94.85332 * 28 5 4 30 30 C 1.53001 * 110.37338 * 217.18838 * 28 5 4 31 31 O 1.44419 * 104.79929 * 336.02085 * 28 5 4 32 32 H 1.08996 * 109.47005 * 182.25432 * 1 2 3 33 33 H 1.09000 * 109.46615 * 302.25444 * 1 2 3 34 34 H 1.08995 * 109.46685 * 62.24632 * 1 2 3 35 35 H 1.09000 * 110.51033 * 146.39490 * 4 2 1 36 36 H 1.08998 * 110.51478 * 23.68844 * 4 2 1 37 37 H 1.09001 * 109.47094 * 59.99643 * 10 9 7 38 38 H 1.09007 * 109.46906 * 300.00024 * 10 9 7 39 39 H 0.97000 * 120.00454 * 184.98045 * 17 16 14 40 40 H 1.07997 * 120.03782 * 359.97438 * 23 22 13 41 41 H 1.08005 * 119.95929 * 180.02562 * 24 23 22 42 42 H 1.07998 * 119.92883 * 179.72445 * 25 24 23 43 43 H 1.07999 * 119.96065 * 179.97438 * 26 25 24 44 44 H 1.07999 * 120.03937 * 180.02562 * 27 26 25 45 45 H 1.09003 * 109.46930 * 65.16467 * 30 28 5 46 46 H 1.08992 * 109.47157 * 185.16905 * 30 28 5 47 47 H 1.08998 * 109.47176 * 305.17145 * 30 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9088 1.0220 0.0000 4 6 2.0678 -0.7729 -1.2247 5 6 2.3200 -2.1994 -0.6873 6 1 1.7030 -2.9229 -1.2202 7 6 3.7781 -2.5596 -0.8095 8 8 4.6164 -1.6895 -0.8211 9 8 4.1457 -3.8470 -0.9055 10 6 5.5673 -4.1199 -1.0198 11 6 5.7870 -5.6077 -1.1169 12 8 4.8388 -6.3635 -1.0918 13 7 7.0371 -6.0982 -1.2317 14 6 8.1147 -5.2531 -1.1582 15 1 8.0073 -4.2794 -0.7035 16 6 9.3441 -5.6495 -1.6684 17 7 9.4243 -6.7110 -2.4392 18 14 10.8837 -4.6741 -1.2591 19 1 11.5007 -5.2186 -0.0229 20 1 11.8495 -4.7792 -2.3822 21 1 10.5247 -3.2488 -1.0467 22 6 7.2352 -7.4683 -1.4257 23 6 6.8580 -8.0638 -2.6232 24 6 7.0556 -9.4173 -2.8116 25 6 7.6288 -10.1802 -1.8103 26 6 8.0064 -9.5905 -0.6176 27 6 7.8117 -8.2375 -0.4223 28 6 1.9042 -2.1198 0.7983 29 1 0.8717 -2.4467 0.9214 30 6 2.8397 -2.9707 1.6596 31 8 2.0341 -0.7235 1.1435 32 1 -0.3633 -1.0268 0.0404 33 1 -0.3632 0.5485 0.8691 34 1 -0.3632 0.4785 -0.9094 35 1 2.9978 -0.3282 -1.5787 36 1 1.3243 -0.7908 -2.0216 37 1 6.0834 -3.7326 -0.1413 38 1 5.9594 -3.6359 -1.9143 39 1 10.2907 -7.0302 -2.7365 40 1 6.4107 -7.4687 -3.4056 41 1 6.7631 -9.8808 -3.7422 42 1 7.7781 -11.2395 -1.9586 43 1 8.4533 -10.1892 0.1623 44 1 8.1072 -7.7776 0.5092 45 1 3.8448 -2.5499 1.6291 46 1 2.4800 -2.9782 2.6884 47 1 2.8610 -3.9902 1.2746 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869656867.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:03 Heat of formation + Delta-G solvation = -142.380968 kcal Electronic energy + Delta-G solvation = -31081.244517 eV Core-core repulsion = 26808.097789 eV Total energy + Delta-G solvation = -4273.146728 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.22397 -41.25931 -40.25919 -38.99652 -37.48810 -36.65620 -33.84961 -33.67675 -33.44046 -31.57857 -31.35618 -29.93807 -29.12657 -26.95846 -26.04961 -24.36723 -23.30219 -23.12349 -21.93771 -21.26169 -21.05137 -19.72353 -19.04631 -18.12607 -17.90160 -17.54675 -17.26605 -17.02497 -16.61505 -16.49227 -16.19387 -16.00516 -15.95960 -15.19277 -15.13363 -14.64496 -14.40587 -14.14432 -14.06246 -13.85100 -13.71976 -13.49949 -13.39002 -13.28071 -13.23416 -12.91027 -12.84485 -12.78570 -12.76708 -12.26450 -12.18792 -12.07892 -12.02079 -12.01135 -11.86159 -11.73764 -11.58747 -11.29744 -10.73633 -10.62310 -10.17946 -9.56870 -9.30591 -8.17862 -6.12007 0.74001 0.78525 1.02381 1.30593 1.34729 1.44972 1.54037 1.74920 2.23605 2.76125 2.77829 2.99811 3.25279 3.29545 3.49380 3.66661 3.90280 3.97832 4.04701 4.08234 4.14343 4.21305 4.22770 4.25114 4.28863 4.34055 4.39933 4.43000 4.53685 4.74602 4.76455 4.82251 4.86394 4.88818 5.04811 5.05578 5.08732 5.14045 5.26433 5.32604 5.35105 5.37886 5.61623 5.75737 5.79318 5.84749 5.96928 6.20078 6.48108 6.60691 6.96743 7.31821 7.73485 8.63638 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.014673 B = 0.002875 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.849974 B = 9738.062663 C =10881.608995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.067 3.933 3 H 0.107 0.893 4 C -0.138 4.138 5 C -0.116 4.116 6 H 0.143 0.857 7 C 0.469 3.531 8 O -0.532 6.532 9 O -0.341 6.341 10 C 0.084 3.916 11 C 0.456 3.544 12 O -0.603 6.603 13 N -0.411 5.411 14 C -0.380 4.380 15 H 0.108 0.892 16 C 0.014 3.986 17 N -0.861 5.861 18 Si 0.983 3.017 19 H -0.271 1.271 20 H -0.281 1.281 21 H -0.262 1.262 22 C 0.211 3.789 23 C -0.113 4.113 24 C -0.116 4.116 25 C -0.141 4.141 26 C -0.115 4.115 27 C -0.142 4.142 28 C 0.091 3.909 29 H 0.121 0.879 30 C -0.162 4.162 31 O -0.386 6.386 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.121 0.879 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.273 0.727 40 H 0.084 0.916 41 H 0.137 0.863 42 H 0.149 0.851 43 H 0.142 0.858 44 H 0.101 0.899 45 H 0.035 0.965 46 H 0.086 0.914 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.322 5.972 2.418 13.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.010 3.990 3 H 0.124 0.876 4 C -0.175 4.175 5 C -0.136 4.136 6 H 0.161 0.839 7 C 0.313 3.687 8 O -0.421 6.421 9 O -0.256 6.256 10 C 0.007 3.993 11 C 0.246 3.754 12 O -0.489 6.489 13 N -0.127 5.127 14 C -0.506 4.506 15 H 0.126 0.874 16 C -0.193 4.193 17 N -0.496 5.496 18 Si 0.806 3.194 19 H -0.197 1.197 20 H -0.206 1.206 21 H -0.186 1.186 22 C 0.121 3.879 23 C -0.133 4.133 24 C -0.135 4.135 25 C -0.159 4.159 26 C -0.134 4.134 27 C -0.162 4.162 28 C 0.033 3.967 29 H 0.138 0.862 30 C -0.219 4.219 31 O -0.306 6.306 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.107 0.893 35 H 0.092 0.908 36 H 0.140 0.860 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.084 0.916 40 H 0.102 0.898 41 H 0.155 0.845 42 H 0.167 0.833 43 H 0.159 0.841 44 H 0.119 0.881 45 H 0.054 0.946 46 H 0.105 0.895 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.271 5.872 2.447 13.822 hybrid contribution 1.528 0.579 -0.197 1.646 sum -10.743 6.451 2.251 12.732 Atomic orbital electron populations 1.22276 0.92959 1.03500 1.03796 1.23197 0.95514 0.96855 0.83444 0.87557 1.23160 1.03653 0.90844 0.99868 1.22759 0.88052 1.01598 1.01150 0.83915 1.24130 0.93705 0.79755 0.71126 1.90633 1.54421 1.50151 1.46881 1.86535 1.27183 1.29043 1.82874 1.22333 0.78815 0.93940 1.04212 1.20077 0.82665 0.89818 0.82828 1.90566 1.41524 1.60311 1.56523 1.41392 1.04867 1.04836 1.61597 1.19965 0.88658 1.00858 1.41085 0.87444 1.26038 1.01901 0.97899 0.93470 1.70053 1.26319 1.24376 1.28831 0.85074 0.77467 0.78912 0.77929 1.19677 1.20611 1.18628 1.17437 0.94613 0.82693 0.93191 1.20828 1.01384 0.95947 0.95106 1.21078 0.99770 0.92589 1.00024 1.21225 1.00653 1.00584 0.93472 1.21113 1.00233 0.93436 0.98580 1.21043 1.02097 0.94946 0.98128 1.23007 1.00953 0.83261 0.89435 0.86174 1.22003 0.98418 0.99617 1.01871 1.89201 1.84793 1.16980 1.39594 0.91419 0.91576 0.89345 0.90832 0.86039 0.88810 0.88702 0.91620 0.89753 0.84497 0.83291 0.84054 0.88093 0.94574 0.89501 0.90387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.91 9.32 71.98 0.67 -1.24 16 2 C 0.07 1.19 4.21 31.10 0.13 1.33 16 3 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 4 C -0.14 -2.61 6.15 31.61 0.19 -2.42 16 5 C -0.12 -2.70 3.54 -10.53 -0.04 -2.74 16 6 H 0.14 2.60 8.14 -2.39 -0.02 2.58 16 7 C 0.47 15.74 5.08 71.24 0.36 16.10 16 8 O -0.53 -20.55 15.41 21.97 0.34 -20.21 16 9 O -0.34 -13.28 9.09 -45.08 -0.41 -13.69 16 10 C 0.08 3.58 4.54 71.24 0.32 3.90 16 11 C 0.46 22.85 7.57 87.66 0.66 23.52 16 12 O -0.60 -32.84 16.29 15.76 0.26 -32.58 16 13 N -0.41 -21.14 2.68 -458.90 -1.23 -22.37 16 14 C -0.38 -19.14 9.01 84.02 0.76 -18.38 16 15 H 0.11 5.11 6.52 -2.91 -0.02 5.09 16 16 C 0.01 0.66 5.15 84.91 0.44 1.10 16 17 N -0.86 -44.18 10.59 21.65 0.23 -43.95 16 18 Si 0.98 39.28 29.57 68.60 2.03 41.31 16 19 H -0.27 -10.65 7.11 99.48 0.71 -9.95 16 20 H -0.28 -11.13 7.11 99.48 0.71 -10.42 16 21 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 22 C 0.21 10.63 2.49 38.22 0.10 10.72 16 23 C -0.11 -5.42 8.92 22.41 0.20 -5.22 16 24 C -0.12 -4.56 10.04 22.25 0.22 -4.34 16 25 C -0.14 -4.97 10.04 22.30 0.22 -4.74 16 26 C -0.12 -4.36 10.04 22.25 0.22 -4.14 16 27 C -0.14 -6.54 9.36 22.40 0.21 -6.33 16 28 C 0.09 2.00 3.41 31.10 0.11 2.11 16 29 H 0.12 1.87 7.24 -2.39 -0.02 1.85 16 30 C -0.16 -4.20 8.51 71.98 0.61 -3.59 16 31 O -0.39 -9.53 11.10 -148.98 -1.65 -11.18 16 32 H 0.07 0.70 6.95 -2.39 -0.02 0.68 16 33 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.09 0.67 8.14 -2.39 -0.02 0.66 16 35 H 0.07 1.75 6.83 -2.39 -0.02 1.74 16 36 H 0.12 1.47 7.87 -2.39 -0.02 1.45 16 37 H 0.09 3.88 7.49 -2.39 -0.02 3.86 16 38 H 0.10 4.02 8.13 -2.38 -0.02 4.00 16 39 H 0.27 13.40 8.32 -92.71 -0.77 12.63 16 40 H 0.08 4.23 8.06 -2.91 -0.02 4.21 16 41 H 0.14 4.42 8.06 -2.91 -0.02 4.40 16 42 H 0.15 3.93 8.06 -2.91 -0.02 3.91 16 43 H 0.14 4.27 8.06 -2.91 -0.02 4.25 16 44 H 0.10 4.63 8.06 -2.91 -0.02 4.61 16 45 H 0.04 1.12 7.29 -2.39 -0.02 1.11 16 46 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 47 H 0.08 2.15 7.56 -2.39 -0.02 2.13 16 Total: -1.00 -69.25 388.62 5.93 -63.32 By element: Atomic # 1 Polarization: 32.73 SS G_CDS: 0.97 Total: 33.70 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: 5.40 Total: 5.65 kcal Atomic # 7 Polarization: -65.32 SS G_CDS: -1.00 Total: -66.32 kcal Atomic # 8 Polarization: -76.20 SS G_CDS: -1.47 Total: -77.67 kcal Atomic # 14 Polarization: 39.28 SS G_CDS: 2.03 Total: 41.31 kcal Total: -69.25 5.93 -63.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869656867.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.056 kcal (2) G-P(sol) polarization free energy of solvation -69.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds