Wall clock time and date at job start Wed Apr 1 2020 05:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 110.33396 * 2 1 4 4 C 1.54475 * 110.46391 * 237.68364 * 2 1 3 5 5 C 1.54516 * 104.06348 * 217.13929 * 4 2 1 6 6 H 1.09001 * 110.62576 * 118.70236 * 5 4 2 7 7 C 1.50693 * 110.51364 * 241.35699 * 5 4 2 8 8 O 1.20833 * 119.99826 * 114.64071 * 7 5 4 9 9 O 1.34228 * 120.00217 * 294.64449 * 7 5 4 10 10 C 1.45199 * 116.99926 * 180.02562 * 9 7 5 11 11 C 1.50707 * 109.47013 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99901 * 354.98971 * 11 10 9 13 13 N 1.34770 * 120.00161 * 174.98456 * 11 10 9 14 14 C 1.37143 * 120.00178 * 6.00841 * 13 11 10 15 15 H 1.07999 * 120.00070 * 53.61537 * 14 13 11 16 16 C 1.38886 * 120.00129 * 233.62328 * 14 13 11 17 17 N 1.31424 * 120.00298 * 5.46361 * 16 14 13 18 18 Si 1.86801 * 119.99986 * 185.46286 * 16 14 13 19 19 H 1.48501 * 109.47269 * 60.00104 * 18 16 14 20 20 H 1.48511 * 109.47022 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47438 * 299.99732 * 18 16 14 22 22 C 1.39785 * 120.00383 * 186.00490 * 13 11 10 23 23 C 1.38964 * 120.07536 * 8.28405 * 22 13 11 24 24 C 1.38084 * 119.91785 * 179.74944 * 23 22 13 25 25 C 1.38309 * 120.08226 * 0.55307 * 24 23 22 26 26 C 1.38310 * 120.15357 * 359.69723 * 25 24 23 27 27 C 1.38086 * 120.07558 * 0.02959 * 26 25 24 28 28 C 1.54483 * 104.05926 * 0.02562 * 5 4 2 29 29 H 1.08999 * 110.36996 * 265.14138 * 28 5 4 30 30 C 1.53005 * 110.37004 * 142.80821 * 28 5 4 31 31 O 1.44423 * 104.80309 * 23.97710 * 28 5 4 32 32 H 1.09007 * 109.47012 * 299.19962 * 1 2 3 33 33 H 1.08992 * 109.47076 * 59.20525 * 1 2 3 34 34 H 1.09004 * 109.46775 * 179.20734 * 1 2 3 35 35 H 1.09000 * 110.51068 * 98.49915 * 4 2 1 36 36 H 1.08999 * 110.51500 * 335.78451 * 4 2 1 37 37 H 1.08997 * 109.47354 * 60.00368 * 10 9 7 38 38 H 1.08995 * 109.47252 * 299.99305 * 10 9 7 39 39 H 0.96999 * 120.00428 * 184.99986 * 17 16 14 40 40 H 1.08000 * 120.04107 * 359.97438 * 23 22 13 41 41 H 1.08002 * 119.95572 * 180.25363 * 24 23 22 42 42 H 1.07994 * 119.92519 * 179.72679 * 25 24 23 43 43 H 1.07995 * 119.95861 * 180.02562 * 26 25 24 44 44 H 1.07998 * 120.03244 * 179.97438 * 27 26 25 45 45 H 1.08998 * 109.46924 * 59.99301 * 30 28 5 46 46 H 1.08998 * 109.47142 * 179.97438 * 30 28 5 47 47 H 1.09000 * 109.46788 * 299.99685 * 30 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0220 0.0000 4 6 2.0701 -0.7737 -1.2231 5 6 3.3208 -1.5032 -0.6836 6 1 3.2027 -2.5833 -0.7706 7 6 4.5555 -1.0476 -1.4175 8 8 5.4201 -0.4433 -0.8282 9 8 4.6949 -1.3129 -2.7259 10 6 5.9101 -0.8444 -3.3677 11 6 5.8905 -1.2317 -4.8240 12 8 4.9903 -1.9199 -5.2564 13 7 6.8731 -0.8131 -5.6460 14 6 7.9537 -0.1401 -5.1358 15 1 8.5251 -0.5705 -4.3268 16 6 8.3131 1.0950 -5.6596 17 7 7.5570 1.6684 -6.5689 18 14 9.8711 1.9413 -5.0715 19 1 11.0430 1.0754 -5.3579 20 1 10.0284 3.2368 -5.7802 21 1 9.7807 2.1843 -3.6093 22 6 6.7910 -1.0650 -7.0185 23 6 5.6249 -1.5906 -7.5616 24 6 5.5455 -1.8333 -8.9186 25 6 6.6288 -1.5646 -9.7354 26 6 7.7928 -1.0462 -9.1975 27 6 7.8773 -0.7958 -7.8422 28 6 3.3879 -1.0844 0.8019 29 1 4.0515 -0.2285 0.9252 30 6 3.8617 -2.2558 1.6646 31 8 2.0323 -0.7232 1.1451 32 1 -0.3633 0.5014 0.8971 33 1 -0.3633 0.5261 -0.8827 34 1 -0.3633 -1.0276 -0.0142 35 1 2.3450 -0.0835 -2.0207 36 1 1.3313 -1.4929 -1.5768 37 1 6.7749 -1.2977 -2.8833 38 1 5.9719 0.2404 -3.2808 39 1 7.8441 2.4950 -6.9873 40 1 4.7804 -1.8056 -6.9236 41 1 4.6381 -2.2380 -9.3419 42 1 6.5655 -1.7595 -10.7957 43 1 8.6367 -0.8372 -9.8383 44 1 8.7867 -0.3915 -7.4229 45 1 4.8534 -2.5693 1.3386 46 1 3.9041 -1.9446 2.7083 47 1 3.1653 -3.0880 1.5613 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869656868.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:07 Heat of formation + Delta-G solvation = -125.286021 kcal Electronic energy + Delta-G solvation = -30835.702809 eV Core-core repulsion = 26563.297374 eV Total energy + Delta-G solvation = -4272.405435 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.90363 -39.84037 -39.10781 -37.31854 -36.11555 -35.08816 -32.98449 -32.75514 -32.01962 -29.90343 -29.68206 -29.15544 -27.41354 -25.32086 -24.90131 -22.64696 -21.76655 -21.53110 -21.23651 -20.21235 -19.60123 -18.01939 -17.78685 -16.81540 -16.46211 -16.09655 -15.87132 -15.63565 -15.44950 -15.18843 -15.01652 -14.39663 -14.28224 -13.78342 -13.64384 -13.22927 -13.17063 -13.00391 -12.84215 -12.65390 -12.44580 -12.33043 -12.15044 -12.12483 -11.90427 -11.75165 -11.60096 -11.43733 -11.35069 -11.14821 -11.13006 -10.91228 -10.85226 -10.57317 -10.39112 -10.33287 -10.11019 -9.89635 -9.36497 -8.90313 -8.39396 -7.86522 -7.00179 -6.42628 -4.65615 2.25163 2.32191 2.49431 2.58885 3.00191 3.07927 3.08589 3.53555 3.58160 3.87986 4.24823 4.31282 4.34638 4.63868 4.65796 4.82731 4.95482 5.05251 5.09311 5.12155 5.17458 5.30059 5.35536 5.50578 5.53904 5.59416 5.67638 5.77436 5.79476 5.81730 5.84531 5.86434 5.91028 5.96242 5.98130 6.10202 6.59237 6.60482 6.65000 6.67098 6.79273 7.03481 7.14803 7.41767 7.53272 7.56280 7.66146 7.84128 7.96406 8.30537 8.72638 9.05259 9.44216 10.38080 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.012651 B = 0.002937 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.754024 B = 9532.161416 C =10833.111580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.068 3.932 3 H 0.072 0.928 4 C -0.139 4.139 5 C -0.114 4.114 6 H 0.122 0.878 7 C 0.468 3.532 8 O -0.506 6.506 9 O -0.333 6.333 10 C 0.071 3.929 11 C 0.492 3.508 12 O -0.548 6.548 13 N -0.377 5.377 14 C -0.383 4.383 15 H 0.095 0.905 16 C 0.061 3.939 17 N -0.836 5.836 18 Si 0.917 3.083 19 H -0.267 1.267 20 H -0.279 1.279 21 H -0.266 1.266 22 C 0.194 3.806 23 C -0.181 4.181 24 C -0.117 4.117 25 C -0.172 4.172 26 C -0.119 4.119 27 C -0.105 4.105 28 C 0.083 3.917 29 H 0.091 0.909 30 C -0.145 4.145 31 O -0.365 6.365 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.105 0.895 39 H 0.277 0.723 40 H 0.165 0.835 41 H 0.106 0.894 42 H 0.102 0.898 43 H 0.105 0.895 44 H 0.124 0.876 45 H 0.073 0.927 46 H 0.067 0.933 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.145 -3.217 8.780 11.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.011 3.989 3 H 0.090 0.910 4 C -0.177 4.177 5 C -0.133 4.133 6 H 0.140 0.860 7 C 0.310 3.690 8 O -0.394 6.394 9 O -0.248 6.248 10 C -0.005 4.005 11 C 0.282 3.718 12 O -0.431 6.431 13 N -0.086 5.086 14 C -0.510 4.510 15 H 0.113 0.887 16 C -0.151 4.151 17 N -0.467 5.467 18 Si 0.741 3.259 19 H -0.192 1.192 20 H -0.204 1.204 21 H -0.191 1.191 22 C 0.098 3.902 23 C -0.201 4.201 24 C -0.136 4.136 25 C -0.191 4.191 26 C -0.138 4.138 27 C -0.125 4.125 28 C 0.026 3.974 29 H 0.109 0.891 30 C -0.202 4.202 31 O -0.285 6.285 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.106 0.894 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.122 0.878 39 H 0.088 0.912 40 H 0.181 0.819 41 H 0.124 0.876 42 H 0.120 0.880 43 H 0.124 0.876 44 H 0.142 0.858 45 H 0.092 0.908 46 H 0.086 0.914 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.476 -3.175 8.915 12.060 hybrid contribution 1.301 0.880 -0.226 1.587 sum -6.175 -2.295 8.689 10.904 Atomic orbital electron populations 1.21802 0.92741 1.03063 1.02640 1.23030 0.95619 0.95679 0.84589 0.90987 1.23005 0.95625 1.00258 0.98818 1.22470 0.91574 1.03874 0.95413 0.85998 1.23275 0.87874 0.76629 0.81180 1.90669 1.42491 1.38075 1.68208 1.86478 1.42836 1.72289 1.23151 1.22623 0.84399 1.01777 0.91686 1.20193 0.81866 0.82212 0.87487 1.90338 1.36781 1.40029 1.75981 1.40827 1.17679 1.46891 1.03249 1.19359 1.08466 1.00442 1.22755 0.88736 1.25626 0.98330 0.95537 0.95591 1.69946 1.35177 1.18043 1.23531 0.86151 0.81280 0.78806 0.79620 1.19227 1.20433 1.19088 1.18125 0.93495 0.94332 0.84232 1.22363 0.99249 1.02711 0.95728 1.20843 0.97707 1.01306 0.93703 1.20779 0.94819 1.05122 0.98429 1.20737 0.97429 1.00860 0.94784 1.20751 0.98629 1.00717 0.92445 1.22957 0.85123 0.98995 0.90358 0.89142 1.21805 1.01528 0.96789 1.00102 1.89154 1.26741 1.74475 1.38097 0.91754 0.90882 0.91616 0.89385 0.88853 0.88732 0.87755 0.91209 0.81857 0.87593 0.88033 0.87647 0.85813 0.90828 0.91370 0.91613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.53 37.16 0.35 -0.84 16 2 C 0.07 0.71 3.92 -25.96 -0.10 0.61 16 3 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 4 C -0.14 -1.53 6.27 -25.16 -0.16 -1.69 16 5 C -0.11 -1.39 3.17 -90.20 -0.29 -1.67 16 6 H 0.12 1.29 7.87 -51.93 -0.41 0.88 16 7 C 0.47 7.43 7.06 36.00 0.25 7.68 16 8 O -0.51 -8.99 15.20 -18.76 -0.29 -9.27 16 9 O -0.33 -6.11 9.76 -45.88 -0.45 -6.56 16 10 C 0.07 1.42 4.77 36.01 0.17 1.60 16 11 C 0.49 11.47 7.61 -10.98 -0.08 11.38 16 12 O -0.55 -13.45 13.03 -14.05 -0.18 -13.63 16 13 N -0.38 -9.23 2.66 -58.98 -0.16 -9.38 16 14 C -0.38 -9.13 7.40 -14.94 -0.11 -9.24 16 15 H 0.10 2.13 7.78 -52.49 -0.41 1.72 16 16 C 0.06 1.44 3.85 -17.49 -0.07 1.37 16 17 N -0.84 -21.14 11.62 55.49 0.64 -20.50 16 18 Si 0.92 18.28 29.56 -169.99 -5.02 13.26 16 19 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 20 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 21 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 22 C 0.19 4.77 5.71 -83.70 -0.48 4.29 16 23 C -0.18 -4.23 8.97 -39.37 -0.35 -4.59 16 24 C -0.12 -2.38 10.04 -39.61 -0.40 -2.78 16 25 C -0.17 -3.33 10.04 -39.53 -0.40 -3.73 16 26 C -0.12 -2.43 10.04 -39.61 -0.40 -2.82 16 27 C -0.10 -2.43 7.86 -39.37 -0.31 -2.74 16 28 C 0.08 0.98 3.28 -25.95 -0.09 0.90 16 29 H 0.09 1.19 6.91 -51.93 -0.36 0.83 16 30 C -0.15 -1.42 9.52 37.16 0.35 -1.06 16 31 O -0.36 -4.38 11.04 -35.23 -0.39 -4.77 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 35 H 0.09 1.04 7.73 -51.93 -0.40 0.64 16 36 H 0.09 0.89 7.86 -51.93 -0.41 0.48 16 37 H 0.09 1.76 8.07 -51.93 -0.42 1.34 16 38 H 0.10 2.12 8.04 -51.93 -0.42 1.71 16 39 H 0.28 6.68 8.32 -40.82 -0.34 6.34 16 40 H 0.16 3.98 4.75 -55.01 -0.26 3.72 16 41 H 0.11 1.85 8.06 -52.49 -0.42 1.43 16 42 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 43 H 0.11 1.84 8.06 -52.49 -0.42 1.42 16 44 H 0.12 2.93 6.03 -52.49 -0.32 2.61 16 45 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 387.70 15.07 5.84 5.84 Total: -1.00 -28.83 387.70 -8.85 -37.68 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -6.76 Total: 10.67 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: -2.09 Total: -3.33 kcal Atomic # 7 Polarization: -30.37 SS G_CDS: 0.49 Total: -29.88 kcal Atomic # 8 Polarization: -32.93 SS G_CDS: -1.30 Total: -34.23 kcal Atomic # 14 Polarization: 18.28 SS G_CDS: -5.02 Total: 13.26 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -28.83 -8.85 -37.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869656868.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.608 kcal (2) G-P(sol) polarization free energy of solvation -28.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds