Wall clock time and date at job start Wed Apr 1 2020 05:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 110.33396 * 2 1 4 4 C 1.54475 * 110.46391 * 237.68364 * 2 1 3 5 5 C 1.54516 * 104.06348 * 217.13929 * 4 2 1 6 6 H 1.09001 * 110.62576 * 118.70236 * 5 4 2 7 7 C 1.50693 * 110.51364 * 241.35699 * 5 4 2 8 8 O 1.20833 * 119.99826 * 114.64071 * 7 5 4 9 9 O 1.34228 * 120.00217 * 294.64449 * 7 5 4 10 10 C 1.45199 * 116.99926 * 180.02562 * 9 7 5 11 11 C 1.50707 * 109.47013 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99901 * 354.98971 * 11 10 9 13 13 N 1.34770 * 120.00161 * 174.98456 * 11 10 9 14 14 C 1.37143 * 120.00178 * 6.00841 * 13 11 10 15 15 H 1.07999 * 120.00070 * 53.61537 * 14 13 11 16 16 C 1.38886 * 120.00129 * 233.62328 * 14 13 11 17 17 N 1.31424 * 120.00298 * 5.46361 * 16 14 13 18 18 Si 1.86801 * 119.99986 * 185.46286 * 16 14 13 19 19 H 1.48501 * 109.47269 * 60.00104 * 18 16 14 20 20 H 1.48511 * 109.47022 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47438 * 299.99732 * 18 16 14 22 22 C 1.39785 * 120.00383 * 186.00490 * 13 11 10 23 23 C 1.38964 * 120.07536 * 8.28405 * 22 13 11 24 24 C 1.38084 * 119.91785 * 179.74944 * 23 22 13 25 25 C 1.38309 * 120.08226 * 0.55307 * 24 23 22 26 26 C 1.38310 * 120.15357 * 359.69723 * 25 24 23 27 27 C 1.38086 * 120.07558 * 0.02959 * 26 25 24 28 28 C 1.54483 * 104.05926 * 0.02562 * 5 4 2 29 29 H 1.08999 * 110.36996 * 265.14138 * 28 5 4 30 30 C 1.53005 * 110.37004 * 142.80821 * 28 5 4 31 31 O 1.44423 * 104.80309 * 23.97710 * 28 5 4 32 32 H 1.09007 * 109.47012 * 299.19962 * 1 2 3 33 33 H 1.08992 * 109.47076 * 59.20525 * 1 2 3 34 34 H 1.09004 * 109.46775 * 179.20734 * 1 2 3 35 35 H 1.09000 * 110.51068 * 98.49915 * 4 2 1 36 36 H 1.08999 * 110.51500 * 335.78451 * 4 2 1 37 37 H 1.08997 * 109.47354 * 60.00368 * 10 9 7 38 38 H 1.08995 * 109.47252 * 299.99305 * 10 9 7 39 39 H 0.96999 * 120.00428 * 184.99986 * 17 16 14 40 40 H 1.08000 * 120.04107 * 359.97438 * 23 22 13 41 41 H 1.08002 * 119.95572 * 180.25363 * 24 23 22 42 42 H 1.07994 * 119.92519 * 179.72679 * 25 24 23 43 43 H 1.07995 * 119.95861 * 180.02562 * 26 25 24 44 44 H 1.07998 * 120.03244 * 179.97438 * 27 26 25 45 45 H 1.08998 * 109.46924 * 59.99301 * 30 28 5 46 46 H 1.08998 * 109.47142 * 179.97438 * 30 28 5 47 47 H 1.09000 * 109.46788 * 299.99685 * 30 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0220 0.0000 4 6 2.0701 -0.7737 -1.2231 5 6 3.3208 -1.5032 -0.6836 6 1 3.2027 -2.5833 -0.7706 7 6 4.5555 -1.0476 -1.4175 8 8 5.4201 -0.4433 -0.8282 9 8 4.6949 -1.3129 -2.7259 10 6 5.9101 -0.8444 -3.3677 11 6 5.8905 -1.2317 -4.8240 12 8 4.9903 -1.9199 -5.2564 13 7 6.8731 -0.8131 -5.6460 14 6 7.9537 -0.1401 -5.1358 15 1 8.5251 -0.5705 -4.3268 16 6 8.3131 1.0950 -5.6596 17 7 7.5570 1.6684 -6.5689 18 14 9.8711 1.9413 -5.0715 19 1 11.0430 1.0754 -5.3579 20 1 10.0284 3.2368 -5.7802 21 1 9.7807 2.1843 -3.6093 22 6 6.7910 -1.0650 -7.0185 23 6 5.6249 -1.5906 -7.5616 24 6 5.5455 -1.8333 -8.9186 25 6 6.6288 -1.5646 -9.7354 26 6 7.7928 -1.0462 -9.1975 27 6 7.8773 -0.7958 -7.8422 28 6 3.3879 -1.0844 0.8019 29 1 4.0515 -0.2285 0.9252 30 6 3.8617 -2.2558 1.6646 31 8 2.0323 -0.7232 1.1451 32 1 -0.3633 0.5014 0.8971 33 1 -0.3633 0.5261 -0.8827 34 1 -0.3633 -1.0276 -0.0142 35 1 2.3450 -0.0835 -2.0207 36 1 1.3313 -1.4929 -1.5768 37 1 6.7749 -1.2977 -2.8833 38 1 5.9719 0.2404 -3.2808 39 1 7.8441 2.4950 -6.9873 40 1 4.7804 -1.8056 -6.9236 41 1 4.6381 -2.2380 -9.3419 42 1 6.5655 -1.7595 -10.7957 43 1 8.6367 -0.8372 -9.8383 44 1 8.7867 -0.3915 -7.4229 45 1 4.8534 -2.5693 1.3386 46 1 3.9041 -1.9446 2.7083 47 1 3.1653 -3.0880 1.5613 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869656868.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:06 Heat of formation + Delta-G solvation = -138.835473 kcal Electronic energy + Delta-G solvation = -30836.290358 eV Core-core repulsion = 26563.297374 eV Total energy + Delta-G solvation = -4272.992984 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.18008 -41.48182 -40.27713 -38.97592 -37.57362 -36.87222 -33.87038 -33.84618 -33.68224 -31.53239 -31.32092 -30.06492 -28.96257 -27.12049 -25.90762 -23.89921 -23.28524 -22.86542 -22.38748 -21.41039 -21.33051 -19.72958 -19.07242 -18.17418 -17.86268 -17.71694 -17.35396 -16.96790 -16.82973 -16.43210 -16.32693 -15.88923 -15.79199 -15.18827 -14.82142 -14.71065 -14.58565 -14.34468 -14.09149 -13.91941 -13.85251 -13.53814 -13.49020 -13.29090 -13.09645 -13.03709 -12.85237 -12.81269 -12.77514 -12.46607 -12.36890 -12.18285 -12.02892 -11.92813 -11.77618 -11.75529 -11.53641 -11.13190 -10.83118 -10.66274 -10.17697 -9.54852 -8.79117 -8.21167 -6.52022 0.62167 0.79859 0.95861 1.19682 1.41006 1.43812 1.52525 1.83367 2.21123 2.59614 2.78465 2.87471 3.33221 3.34162 3.44002 3.57322 3.77522 3.82673 4.00943 4.08354 4.11812 4.20476 4.30439 4.31885 4.34797 4.36265 4.47145 4.58136 4.61466 4.73586 4.82200 4.89705 4.92421 4.96183 5.00511 5.07926 5.08750 5.18013 5.24494 5.28574 5.29623 5.39142 5.75488 5.78230 5.82040 5.86497 5.97183 6.18754 6.47751 6.56363 6.90223 7.25435 7.63757 8.58315 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.012651 B = 0.002937 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.754024 B = 9532.161416 C =10833.111580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.064 3.936 3 H 0.067 0.933 4 C -0.139 4.139 5 C -0.110 4.110 6 H 0.143 0.857 7 C 0.469 3.531 8 O -0.527 6.527 9 O -0.342 6.342 10 C 0.084 3.916 11 C 0.479 3.521 12 O -0.568 6.568 13 N -0.389 5.389 14 C -0.395 4.395 15 H 0.102 0.898 16 C 0.028 3.972 17 N -0.870 5.870 18 Si 0.979 3.021 19 H -0.259 1.259 20 H -0.280 1.280 21 H -0.263 1.263 22 C 0.162 3.838 23 C -0.206 4.206 24 C -0.116 4.116 25 C -0.163 4.163 26 C -0.119 4.119 27 C -0.123 4.123 28 C 0.084 3.916 29 H 0.072 0.928 30 C -0.143 4.143 31 O -0.371 6.371 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.112 0.888 37 H 0.105 0.895 38 H 0.096 0.904 39 H 0.277 0.723 40 H 0.149 0.851 41 H 0.137 0.863 42 H 0.144 0.856 43 H 0.136 0.864 44 H 0.111 0.889 45 H 0.072 0.928 46 H 0.075 0.925 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.337 -3.740 8.333 11.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.007 3.993 3 H 0.085 0.915 4 C -0.176 4.176 5 C -0.129 4.129 6 H 0.161 0.839 7 C 0.313 3.687 8 O -0.416 6.416 9 O -0.257 6.257 10 C 0.007 3.993 11 C 0.271 3.729 12 O -0.453 6.453 13 N -0.098 5.098 14 C -0.521 4.521 15 H 0.119 0.881 16 C -0.180 4.180 17 N -0.502 5.502 18 Si 0.801 3.199 19 H -0.184 1.184 20 H -0.205 1.205 21 H -0.187 1.187 22 C 0.066 3.934 23 C -0.226 4.226 24 C -0.135 4.135 25 C -0.182 4.182 26 C -0.137 4.137 27 C -0.144 4.144 28 C 0.026 3.974 29 H 0.090 0.910 30 C -0.200 4.200 31 O -0.291 6.291 32 H 0.087 0.913 33 H 0.104 0.896 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.130 0.870 37 H 0.123 0.877 38 H 0.114 0.886 39 H 0.087 0.913 40 H 0.166 0.834 41 H 0.154 0.846 42 H 0.162 0.838 43 H 0.154 0.846 44 H 0.129 0.871 45 H 0.091 0.909 46 H 0.094 0.906 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.670 -3.709 8.476 12.018 hybrid contribution 1.312 1.018 -0.147 1.667 sum -6.358 -2.691 8.329 10.818 Atomic orbital electron populations 1.21805 0.90785 1.03735 1.03482 1.23164 0.97153 0.95169 0.83818 0.91499 1.23056 0.95429 1.00421 0.98712 1.22641 0.89995 1.05106 0.95149 0.83894 1.24040 0.88690 0.75846 0.80166 1.90655 1.43595 1.39074 1.68283 1.86499 1.42082 1.72554 1.24590 1.22340 0.85639 1.01147 0.90163 1.20688 0.81550 0.82004 0.88684 1.90313 1.37386 1.40928 1.76664 1.41052 1.18037 1.47022 1.03688 1.19669 1.08552 1.00847 1.23049 0.88071 1.26344 1.00794 0.95658 0.95234 1.70062 1.36808 1.18440 1.24871 0.85199 0.77982 0.77619 0.79050 1.18355 1.20485 1.18748 1.18488 0.94559 0.95734 0.84601 1.22382 0.98698 1.04242 0.97254 1.21220 0.99404 1.00293 0.92559 1.21229 0.93555 1.03023 1.00351 1.21145 0.98986 0.99663 0.93936 1.20801 0.97937 1.01820 0.93806 1.22937 0.84973 0.99117 0.90351 0.91038 1.21809 1.01724 0.96351 1.00067 1.89154 1.26585 1.74612 1.38754 0.91334 0.89639 0.91023 0.90690 0.86957 0.87685 0.88633 0.91330 0.83443 0.84566 0.83817 0.84571 0.87130 0.90904 0.90646 0.90243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.53 71.98 0.69 -1.39 16 2 C 0.06 1.28 3.92 31.10 0.12 1.41 16 3 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 4 C -0.14 -2.94 6.27 31.61 0.20 -2.74 16 5 C -0.11 -2.60 3.17 -10.52 -0.03 -2.63 16 6 H 0.14 2.80 7.87 -2.39 -0.02 2.78 16 7 C 0.47 15.06 7.06 71.23 0.50 15.56 16 8 O -0.53 -19.08 15.20 21.94 0.33 -18.75 16 9 O -0.34 -12.86 9.76 -45.06 -0.44 -13.30 16 10 C 0.08 3.45 4.77 71.24 0.34 3.79 16 11 C 0.48 23.24 7.61 87.66 0.67 23.91 16 12 O -0.57 -28.99 13.03 15.72 0.20 -28.79 16 13 N -0.39 -19.66 2.66 -458.90 -1.22 -20.88 16 14 C -0.39 -19.25 7.40 84.02 0.62 -18.63 16 15 H 0.10 4.64 7.78 -2.91 -0.02 4.62 16 16 C 0.03 1.34 3.85 84.91 0.33 1.66 16 17 N -0.87 -44.85 11.62 21.65 0.25 -44.59 16 18 Si 0.98 37.58 29.56 68.60 2.03 39.60 16 19 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 20 H -0.28 -10.67 7.11 99.48 0.71 -9.97 16 21 H -0.26 -9.88 7.11 99.48 0.71 -9.18 16 22 C 0.16 8.14 5.71 38.22 0.22 8.36 16 23 C -0.21 -9.79 8.97 22.41 0.20 -9.59 16 24 C -0.12 -4.56 10.04 22.25 0.22 -4.34 16 25 C -0.16 -5.82 10.04 22.30 0.22 -5.59 16 26 C -0.12 -4.61 10.04 22.25 0.22 -4.39 16 27 C -0.12 -5.72 7.86 22.41 0.18 -5.55 16 28 C 0.08 1.93 3.28 31.10 0.10 2.03 16 29 H 0.07 1.91 6.91 -2.39 -0.02 1.89 16 30 C -0.14 -2.60 9.52 71.98 0.68 -1.92 16 31 O -0.37 -8.49 11.04 -148.98 -1.64 -10.14 16 32 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 33 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.07 0.98 8.13 -2.38 -0.02 0.96 16 35 H 0.07 1.79 7.73 -2.39 -0.02 1.78 16 36 H 0.11 1.95 7.86 -2.39 -0.02 1.93 16 37 H 0.11 4.04 8.07 -2.39 -0.02 4.02 16 38 H 0.10 4.08 8.04 -2.39 -0.02 4.06 16 39 H 0.28 13.55 8.32 -92.71 -0.77 12.78 16 40 H 0.15 7.46 4.75 -42.81 -0.20 7.25 16 41 H 0.14 4.41 8.06 -2.91 -0.02 4.39 16 42 H 0.14 3.94 8.06 -2.91 -0.02 3.92 16 43 H 0.14 4.36 8.06 -2.91 -0.02 4.33 16 44 H 0.11 5.33 6.03 -2.91 -0.02 5.31 16 45 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 47 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -63.54 387.70 5.79 -57.75 By element: Atomic # 1 Polarization: 38.35 SS G_CDS: 0.79 Total: 39.14 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: 5.48 Total: -0.05 kcal Atomic # 7 Polarization: -64.50 SS G_CDS: -0.97 Total: -65.47 kcal Atomic # 8 Polarization: -69.42 SS G_CDS: -1.55 Total: -70.97 kcal Atomic # 14 Polarization: 37.58 SS G_CDS: 2.03 Total: 39.60 kcal Total: -63.54 5.79 -57.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869656868.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.085 kcal (2) G-P(sol) polarization free energy of solvation -63.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds