Wall clock time and date at job start Wed Apr 1 2020 05:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 110.27472 * 2 1 4 4 C 1.55503 * 110.36748 * 237.89146 * 2 1 3 5 5 C 1.55302 * 100.69382 * 204.60881 * 4 2 1 6 6 H 1.08996 * 110.85048 * 275.83494 * 5 4 2 7 7 C 1.50697 * 110.84721 * 152.41774 * 5 4 2 8 8 O 1.20830 * 120.00067 * 244.17263 * 7 5 4 9 9 O 1.34233 * 120.00167 * 64.17569 * 7 5 4 10 10 C 1.45195 * 117.00188 * 180.02562 * 9 7 5 11 11 C 1.50703 * 109.46903 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00206 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99983 * 179.97438 * 11 10 9 14 14 C 1.39234 * 120.00160 * 175.70517 * 13 11 10 15 15 C 1.39480 * 119.83411 * 215.01733 * 14 13 11 16 16 C 1.36375 * 120.16382 * 179.72216 * 15 14 13 17 17 C 1.40865 * 119.83193 * 0.53178 * 16 15 14 18 18 C 1.41152 * 120.16494 * 179.76836 * 17 16 15 19 19 H 1.08007 * 119.99824 * 214.76027 * 18 17 16 20 20 C 1.39908 * 120.00360 * 34.76096 * 18 17 16 21 21 N 1.30870 * 119.99640 * 355.56011 * 20 18 17 22 22 Si 1.86798 * 120.00238 * 175.56151 * 20 18 17 23 23 H 1.48501 * 109.46907 * 59.99931 * 22 20 18 24 24 H 1.48492 * 109.47042 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47095 * 300.00251 * 22 20 18 26 26 C 1.40866 * 119.67187 * 359.74207 * 17 16 15 27 27 C 1.36373 * 119.82897 * 0.02562 * 26 17 16 28 28 C 1.54388 * 102.43589 * 34.12977 * 5 4 2 29 29 H 1.08999 * 109.82948 * 98.15025 * 28 5 4 30 30 C 1.52998 * 109.82793 * 219.02607 * 28 5 4 31 31 O 1.43236 * 107.58661 * 338.53852 * 28 5 4 32 32 H 1.08999 * 109.47219 * 299.36306 * 1 2 3 33 33 H 1.09007 * 109.47057 * 59.36467 * 1 2 3 34 34 H 1.08999 * 109.47164 * 179.36156 * 1 2 3 35 35 H 1.08999 * 111.33187 * 86.73492 * 4 2 1 36 36 H 1.09000 * 111.14516 * 322.40574 * 4 2 1 37 37 H 1.09003 * 109.46937 * 299.99559 * 10 9 7 38 38 H 1.08994 * 109.47430 * 59.99819 * 10 9 7 39 39 H 0.97008 * 120.00105 * 355.71275 * 13 11 10 40 40 H 1.08003 * 119.91704 * 0.02562 * 15 14 13 41 41 H 1.08006 * 120.08405 * 180.25746 * 16 15 14 42 42 H 0.97005 * 119.99866 * 180.02562 * 21 20 18 43 43 H 1.08003 * 120.08763 * 179.97438 * 26 17 16 44 44 H 1.08002 * 119.92193 * 180.02562 * 27 26 17 45 45 H 1.08998 * 109.47368 * 59.99982 * 30 28 5 46 46 H 1.09004 * 109.47161 * 179.97438 * 30 28 5 47 47 H 1.08996 * 109.47693 * 300.00066 * 30 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0224 0.0000 4 6 2.0712 -0.7749 -1.2348 5 6 3.4722 -1.2001 -0.7169 6 1 4.1987 -0.4007 -0.8626 7 6 3.9309 -2.4678 -1.3903 8 8 4.0960 -3.4721 -0.7392 9 8 4.1562 -2.4812 -2.7135 10 6 4.5957 -3.7371 -3.2947 11 6 4.7956 -3.5614 -4.7780 12 8 4.5878 -2.4840 -5.2946 13 7 5.2055 -4.6017 -5.5306 14 6 5.3043 -4.4649 -6.9127 15 6 5.0027 -5.5463 -7.7404 16 6 5.0918 -5.4180 -9.0951 17 6 5.5004 -4.1930 -9.6577 18 6 5.5997 -4.0539 -11.0588 19 1 6.3724 -3.4320 -11.4864 20 6 4.6974 -4.7217 -11.8939 21 7 3.8167 -5.5431 -11.3816 22 14 4.7496 -4.4410 -13.7399 23 1 6.0822 -4.8358 -14.2630 24 1 3.6986 -5.2601 -14.3951 25 1 4.5102 -3.0042 -14.0290 26 6 5.8089 -3.1071 -8.8150 27 6 5.7105 -3.2489 -7.4623 28 6 3.2125 -1.4394 0.7861 29 1 3.0666 -2.5036 0.9713 30 6 4.3989 -0.9280 1.6056 31 8 2.0285 -0.7156 1.1413 32 1 -0.3633 0.5039 0.8956 33 1 -0.3633 0.5237 -0.8843 34 1 -0.3633 -1.0276 -0.0115 35 1 2.1550 -0.1245 -2.1055 36 1 1.4529 -1.6451 -1.4549 37 1 5.5358 -4.0411 -2.8344 38 1 3.8405 -4.5030 -3.1184 39 1 5.4315 -5.4458 -5.1094 40 1 4.6931 -6.4861 -7.3074 41 1 4.8539 -6.2550 -9.7350 42 1 3.1912 -6.0064 -11.9605 43 1 6.1232 -2.1649 -9.2392 44 1 5.9463 -2.4173 -6.8148 45 1 4.5299 0.1395 1.4283 46 1 4.2094 -1.0993 2.6653 47 1 5.3027 -1.4593 1.3073 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869657749.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:47 Heat of formation + Delta-G solvation = -147.127677 kcal Electronic energy + Delta-G solvation = -29346.895846 eV Core-core repulsion = 25073.543285 eV Total energy + Delta-G solvation = -4273.352560 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.28487 -39.96386 -39.33861 -37.41055 -36.57072 -34.52588 -33.20087 -33.06033 -32.98043 -30.02364 -29.60072 -29.25918 -28.15283 -25.44554 -24.72587 -23.03144 -21.84007 -21.58010 -20.89341 -20.38043 -19.82343 -18.35656 -17.58901 -17.34673 -17.19624 -16.76264 -16.49835 -16.10990 -15.32603 -15.22587 -15.05827 -14.64101 -14.23506 -13.98958 -13.86942 -13.43118 -13.38495 -13.22173 -12.98612 -12.77167 -12.71021 -12.56556 -12.23332 -12.18346 -12.09761 -11.77166 -11.64387 -11.43005 -11.35629 -11.27426 -11.20037 -11.10877 -10.96330 -10.77806 -10.76506 -10.10286 -9.88503 -9.55821 -9.52927 -9.21419 -8.96482 -7.61183 -6.94738 -6.66883 -4.39828 1.80136 2.04322 2.42632 2.93459 3.03786 3.06646 3.09069 3.22305 3.26438 3.56455 3.89499 3.94252 4.14719 4.30424 4.52855 4.59460 4.64356 4.71905 4.80434 4.90700 4.93174 4.94839 4.96552 5.09000 5.19846 5.31254 5.37110 5.49817 5.59300 5.60256 5.74458 5.80017 5.81115 6.02729 6.13076 6.37068 6.64085 6.64704 6.82834 7.00331 7.12514 7.22699 7.35453 7.57516 7.64936 7.78322 8.00011 8.14533 8.25342 8.52350 8.61596 8.87322 8.93131 10.24042 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.021966 B = 0.001764 C = 0.001698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.408562 B =15871.551339 C =16481.374960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.076 3.924 3 H 0.077 0.923 4 C -0.140 4.140 5 C -0.116 4.116 6 H 0.126 0.874 7 C 0.475 3.525 8 O -0.504 6.504 9 O -0.324 6.324 10 C 0.050 3.950 11 C 0.498 3.502 12 O -0.508 6.508 13 N -0.644 5.644 14 C -0.001 4.001 15 C -0.117 4.117 16 C -0.142 4.142 17 C 0.101 3.899 18 C -0.460 4.460 19 H 0.076 0.924 20 C 0.069 3.931 21 N -0.810 5.810 22 Si 0.917 3.083 23 H -0.266 1.266 24 H -0.279 1.279 25 H -0.266 1.266 26 C -0.206 4.206 27 C -0.084 4.084 28 C 0.090 3.910 29 H 0.101 0.899 30 C -0.162 4.162 31 O -0.370 6.370 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.102 0.898 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.398 0.602 40 H 0.092 0.908 41 H 0.133 0.867 42 H 0.279 0.721 43 H 0.097 0.903 44 H 0.108 0.892 45 H 0.061 0.939 46 H 0.068 0.932 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.522 5.521 20.737 21.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.019 3.981 3 H 0.095 0.905 4 C -0.177 4.177 5 C -0.135 4.135 6 H 0.144 0.856 7 C 0.318 3.682 8 O -0.392 6.392 9 O -0.239 6.239 10 C -0.027 4.027 11 C 0.283 3.717 12 O -0.383 6.383 13 N -0.289 5.289 14 C -0.093 4.093 15 C -0.138 4.138 16 C -0.162 4.162 17 C 0.099 3.901 18 C -0.490 4.490 19 H 0.094 0.906 20 C -0.146 4.146 21 N -0.437 5.437 22 Si 0.742 3.258 23 H -0.190 1.190 24 H -0.204 1.204 25 H -0.191 1.191 26 C -0.226 4.226 27 C -0.104 4.104 28 C 0.032 3.968 29 H 0.118 0.882 30 C -0.219 4.219 31 O -0.290 6.290 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.120 0.880 36 H 0.105 0.895 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.232 0.768 40 H 0.110 0.890 41 H 0.151 0.849 42 H 0.090 0.910 43 H 0.115 0.885 44 H 0.125 0.875 45 H 0.080 0.920 46 H 0.087 0.913 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.922 5.832 20.669 21.674 hybrid contribution 0.163 -0.551 -0.823 1.003 sum -2.759 5.282 19.846 20.722 Atomic orbital electron populations 1.21894 0.93170 1.03132 1.02737 1.23090 0.95364 0.95589 0.84055 0.90528 1.23459 0.92806 1.01976 0.99494 1.22667 1.00537 0.94635 0.95707 0.85581 1.23243 0.73922 0.90329 0.80741 1.90677 1.48062 1.35236 1.65248 1.86564 1.77304 1.36772 1.23216 1.22779 1.02380 0.84981 0.92565 1.19906 0.78946 0.85572 0.87263 1.90738 1.49180 1.25384 1.73029 1.42779 1.65288 1.14196 1.06645 1.17216 1.14855 0.97471 0.79728 1.20310 1.02823 0.96255 0.94374 1.21199 1.03917 0.98797 0.92278 1.17742 0.88995 0.90084 0.93311 1.19485 1.13324 1.25147 0.91060 0.90558 1.25898 0.94332 0.93093 1.01294 1.69748 1.15191 1.21409 1.37386 0.86226 0.78734 0.79359 0.81507 1.19021 1.20408 1.19054 1.20808 1.11017 0.98149 0.92608 1.20401 0.99085 0.95683 0.95198 1.22676 0.86145 0.98048 0.89926 0.88167 1.22143 0.96975 1.01695 1.01082 1.88486 1.41645 1.64953 1.33917 0.91611 0.90836 0.91768 0.87956 0.89511 0.88258 0.88155 0.76841 0.88960 0.84938 0.91009 0.88486 0.87453 0.91963 0.91263 0.91231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.63 37.16 0.36 -0.65 16 2 C 0.08 0.58 4.08 -25.40 -0.10 0.48 16 3 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 4 C -0.14 -1.14 6.06 -24.18 -0.15 -1.28 16 5 C -0.12 -1.03 3.01 -89.83 -0.27 -1.30 16 6 H 0.13 0.92 7.85 -51.93 -0.41 0.51 16 7 C 0.48 5.49 7.27 36.00 0.26 5.75 16 8 O -0.50 -6.58 15.19 -18.75 -0.28 -6.87 16 9 O -0.32 -4.32 9.75 -45.91 -0.45 -4.76 16 10 C 0.05 0.62 5.95 36.01 0.21 0.84 16 11 C 0.50 8.34 7.74 -10.98 -0.09 8.26 16 12 O -0.51 -10.77 13.92 -14.10 -0.20 -10.96 16 13 N -0.64 -10.69 5.30 -9.74 -0.05 -10.74 16 14 C 0.00 -0.02 6.30 -83.57 -0.53 -0.55 16 15 C -0.12 -2.60 9.90 -39.79 -0.39 -2.99 16 16 C -0.14 -3.57 8.61 -39.26 -0.34 -3.91 16 17 C 0.10 2.67 5.55 -106.80 -0.59 2.07 16 18 C -0.46 -12.06 9.02 -37.85 -0.34 -12.40 16 19 H 0.08 1.92 7.85 -52.48 -0.41 1.50 16 20 C 0.07 1.72 5.42 -17.34 -0.09 1.63 16 21 N -0.81 -20.75 10.59 55.55 0.59 -20.16 16 22 Si 0.92 18.73 29.56 -169.99 -5.03 13.70 16 23 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 24 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 25 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 26 C -0.21 -5.12 9.74 -39.26 -0.38 -5.50 16 27 C -0.08 -1.96 8.61 -39.79 -0.34 -2.31 16 28 C 0.09 0.82 3.59 -26.00 -0.09 0.72 16 29 H 0.10 1.04 6.82 -51.93 -0.35 0.69 16 30 C -0.16 -1.21 9.44 37.16 0.35 -0.86 16 31 O -0.37 -3.61 10.70 -35.23 -0.38 -3.99 16 32 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.09 0.75 7.96 -51.93 -0.41 0.34 16 37 H 0.10 1.00 8.13 -51.93 -0.42 0.58 16 38 H 0.10 1.06 8.13 -51.93 -0.42 0.64 16 39 H 0.40 4.94 8.82 -40.82 -0.36 4.58 16 40 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 41 H 0.13 3.44 6.13 -52.48 -0.32 3.12 16 42 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 43 H 0.10 2.29 8.06 -52.48 -0.42 1.87 16 44 H 0.11 2.48 6.22 -52.49 -0.33 2.15 16 45 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 47 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 393.75 15.07 5.93 5.93 Total: -1.00 -31.65 393.75 -9.19 -40.84 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -6.80 Total: 8.99 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: -2.53 Total: -11.99 kcal Atomic # 7 Polarization: -31.44 SS G_CDS: 0.54 Total: -30.90 kcal Atomic # 8 Polarization: -25.28 SS G_CDS: -1.31 Total: -26.58 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.03 Total: 13.70 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.65 -9.19 -40.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869657749.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.286 kcal (2) G-P(sol) polarization free energy of solvation -31.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds