Wall clock time and date at job start Wed Apr 1 2020 05:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 110.33605 * 2 1 4 4 C 1.54473 * 110.46704 * 237.68304 * 2 1 3 5 5 C 1.54506 * 104.06489 * 217.14774 * 4 2 1 6 6 H 1.09000 * 110.63120 * 118.70112 * 5 4 2 7 7 C 1.50704 * 110.51107 * 241.35858 * 5 4 2 8 8 O 1.20820 * 120.00499 * 114.63687 * 7 5 4 9 9 O 1.34237 * 119.99636 * 294.64043 * 7 5 4 10 10 C 1.45199 * 116.99893 * 180.02562 * 9 7 5 11 11 C 1.50698 * 109.47136 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00161 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00047 * 179.97438 * 11 10 9 14 14 C 1.39239 * 120.00107 * 175.71060 * 13 11 10 15 15 C 1.39474 * 119.83450 * 215.01370 * 14 13 11 16 16 C 1.36373 * 120.16764 * 179.75886 * 15 14 13 17 17 C 1.40871 * 119.82993 * 0.51225 * 16 15 14 18 18 C 1.41148 * 120.16255 * 179.71939 * 17 16 15 19 19 H 1.08005 * 120.00084 * 214.80444 * 18 17 16 20 20 C 1.39903 * 120.00549 * 34.80705 * 18 17 16 21 21 N 1.30873 * 119.99759 * 355.55283 * 20 18 17 22 22 Si 1.86797 * 120.00330 * 175.56132 * 20 18 17 23 23 H 1.48499 * 109.47587 * 59.99600 * 22 20 18 24 24 H 1.48504 * 109.47045 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.46872 * 299.99374 * 22 20 18 26 26 C 1.40868 * 119.66831 * 359.74300 * 17 16 15 27 27 C 1.36370 * 119.83331 * 359.97438 * 26 17 16 28 28 C 1.54485 * 104.06196 * 359.97438 * 5 4 2 29 29 H 1.08997 * 110.36843 * 265.15050 * 28 5 4 30 30 C 1.52995 * 110.37089 * 142.81347 * 28 5 4 31 31 O 1.44423 * 104.80004 * 23.98199 * 28 5 4 32 32 H 1.09000 * 109.47049 * 299.20400 * 1 2 3 33 33 H 1.09001 * 109.46349 * 59.20401 * 1 2 3 34 34 H 1.08992 * 109.47020 * 179.20506 * 1 2 3 35 35 H 1.08997 * 110.51393 * 98.49659 * 4 2 1 36 36 H 1.08998 * 110.51404 * 335.79036 * 4 2 1 37 37 H 1.08996 * 109.47226 * 59.99341 * 10 9 7 38 38 H 1.09004 * 109.46852 * 299.99747 * 10 9 7 39 39 H 0.96998 * 119.99949 * 355.70617 * 13 11 10 40 40 H 1.08004 * 119.91545 * 0.02562 * 15 14 13 41 41 H 1.08006 * 120.08498 * 180.25035 * 16 15 14 42 42 H 0.97002 * 120.00397 * 180.02562 * 21 20 18 43 43 H 1.07997 * 120.08073 * 180.02562 * 26 17 16 44 44 H 1.07994 * 119.91636 * 179.97438 * 27 26 17 45 45 H 1.09000 * 109.47429 * 60.00007 * 30 28 5 46 46 H 1.08996 * 109.47573 * 180.02562 * 30 28 5 47 47 H 1.09002 * 109.47581 * 300.00288 * 30 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9089 1.0221 0.0000 4 6 2.0702 -0.7737 -1.2231 5 6 3.3207 -1.5033 -0.6835 6 1 3.2026 -2.5834 -0.7705 7 6 4.5556 -1.0476 -1.4173 8 8 5.4202 -0.4434 -0.8280 9 8 4.6950 -1.3130 -2.7258 10 6 5.9103 -0.8445 -3.3676 11 6 5.8907 -1.2318 -4.8238 12 8 4.9454 -1.8421 -5.2764 13 7 6.9232 -0.8991 -5.6236 14 6 6.9474 -1.3333 -6.9463 15 6 8.1624 -1.6639 -7.5460 16 6 8.1935 -2.0946 -8.8396 17 6 6.9954 -2.1950 -9.5737 18 6 7.0200 -2.6343 -10.9148 19 1 6.3245 -2.2222 -11.6310 20 6 7.9453 -3.6038 -11.3165 21 7 8.8446 -4.0399 -10.4716 22 14 7.8974 -4.2755 -13.0589 23 1 8.0999 -3.1648 -14.0235 24 1 8.9751 -5.2826 -13.2309 25 1 6.5793 -4.9129 -13.3075 26 6 5.7727 -1.8542 -8.9627 27 6 5.7568 -1.4305 -7.6666 28 6 3.3886 -1.0835 0.8017 29 1 4.0524 -0.2278 0.9241 30 6 3.8622 -2.2545 1.6650 31 8 2.0332 -0.7217 1.1451 32 1 -0.3633 0.5014 0.8970 33 1 -0.3632 0.5262 -0.8828 34 1 -0.3633 -1.0275 -0.0143 35 1 2.3451 -0.0835 -2.0207 36 1 1.3315 -1.4928 -1.5768 37 1 6.7750 -1.2977 -2.8830 38 1 5.9721 0.2403 -3.2806 39 1 7.6494 -0.3570 -5.2778 40 1 9.0806 -1.5826 -6.9832 41 1 9.1347 -2.3541 -9.3014 42 1 9.4864 -4.7118 -10.7502 43 1 4.8501 -1.9290 -9.5192 44 1 4.8202 -1.1685 -7.1970 45 1 4.8538 -2.5685 1.3390 46 1 3.9043 -1.9429 2.7086 47 1 3.1657 -3.0867 1.5625 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869657758.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:53 Heat of formation + Delta-G solvation = -146.936659 kcal Electronic energy + Delta-G solvation = -29352.504375 eV Core-core repulsion = 25079.160097 eV Total energy + Delta-G solvation = -4273.344277 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.30519 -39.94753 -39.30372 -37.40397 -36.55808 -34.52380 -33.21808 -33.06605 -32.97178 -30.02885 -29.60763 -29.29848 -28.14749 -25.38813 -24.70535 -22.84054 -21.78201 -21.71431 -20.92093 -20.59828 -19.84330 -18.21429 -17.67068 -17.38388 -16.96227 -16.74544 -16.25923 -16.04545 -15.61008 -15.33983 -15.18695 -14.76007 -14.07698 -14.03018 -13.92474 -13.50023 -13.30450 -13.08672 -12.88694 -12.73204 -12.68012 -12.45590 -12.31905 -12.18296 -12.13359 -11.77193 -11.69913 -11.43040 -11.37405 -11.20133 -11.14547 -11.10462 -10.95745 -10.77639 -10.73447 -10.13721 -10.09590 -9.55666 -9.52705 -9.21107 -8.96258 -7.61027 -6.94523 -6.66690 -4.39655 1.81362 2.06076 2.42872 2.93684 3.03955 3.06797 3.09226 3.23428 3.31042 3.59689 3.94433 4.00028 4.10125 4.36379 4.45678 4.64088 4.68809 4.72441 4.81523 4.89763 4.91481 4.94616 4.96049 5.08532 5.16048 5.31401 5.38534 5.53735 5.59419 5.59629 5.64894 5.73436 5.79344 6.04246 6.13200 6.37254 6.44642 6.64862 6.83020 7.00509 7.12701 7.22912 7.36433 7.57679 7.65130 7.78533 8.00182 8.14702 8.25517 8.52592 8.61797 8.87507 8.93307 10.24274 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.024578 B = 0.001732 C = 0.001682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.953828 B =16157.739634 C =16644.558733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.069 3.931 3 H 0.072 0.928 4 C -0.140 4.140 5 C -0.115 4.115 6 H 0.125 0.875 7 C 0.472 3.528 8 O -0.506 6.506 9 O -0.324 6.324 10 C 0.050 3.950 11 C 0.498 3.502 12 O -0.508 6.508 13 N -0.645 5.645 14 C -0.001 4.001 15 C -0.117 4.117 16 C -0.142 4.142 17 C 0.101 3.899 18 C -0.460 4.460 19 H 0.076 0.924 20 C 0.069 3.931 21 N -0.810 5.810 22 Si 0.917 3.083 23 H -0.266 1.266 24 H -0.279 1.279 25 H -0.266 1.266 26 C -0.206 4.206 27 C -0.084 4.084 28 C 0.084 3.916 29 H 0.090 0.910 30 C -0.147 4.147 31 O -0.363 6.363 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.398 0.602 40 H 0.092 0.908 41 H 0.133 0.867 42 H 0.279 0.721 43 H 0.097 0.903 44 H 0.108 0.892 45 H 0.073 0.927 46 H 0.069 0.931 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.980 6.331 19.691 22.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.011 3.989 3 H 0.090 0.910 4 C -0.177 4.177 5 C -0.134 4.134 6 H 0.143 0.857 7 C 0.315 3.685 8 O -0.394 6.394 9 O -0.239 6.239 10 C -0.027 4.027 11 C 0.283 3.717 12 O -0.383 6.383 13 N -0.289 5.289 14 C -0.093 4.093 15 C -0.138 4.138 16 C -0.162 4.162 17 C 0.099 3.901 18 C -0.490 4.490 19 H 0.094 0.906 20 C -0.146 4.146 21 N -0.437 5.437 22 Si 0.742 3.258 23 H -0.190 1.190 24 H -0.204 1.204 25 H -0.191 1.191 26 C -0.226 4.226 27 C -0.104 4.104 28 C 0.027 3.973 29 H 0.108 0.892 30 C -0.204 4.204 31 O -0.282 6.282 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.105 0.895 36 H 0.114 0.886 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.231 0.769 40 H 0.110 0.890 41 H 0.151 0.849 42 H 0.090 0.910 43 H 0.115 0.885 44 H 0.125 0.875 45 H 0.091 0.909 46 H 0.088 0.912 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.309 5.837 19.739 22.198 hybrid contribution 0.798 -0.116 -0.753 1.104 sum -7.511 5.721 18.986 21.204 Atomic orbital electron populations 1.21810 0.92562 1.03227 1.02757 1.23029 0.95801 0.95568 0.84471 0.91015 1.23021 0.95607 1.00281 0.98819 1.22532 0.91225 1.04190 0.95497 0.85673 1.23429 0.88039 0.76314 0.80733 1.90667 1.42458 1.38198 1.68060 1.86575 1.41431 1.72291 1.23619 1.22774 0.86555 1.01334 0.92060 1.19909 0.84237 0.81039 0.86526 1.90740 1.33259 1.39182 1.75111 1.42779 1.23190 1.52172 1.10779 1.17218 0.95097 1.14302 0.82657 1.20308 0.94325 1.02447 0.96687 1.21199 0.99699 1.01941 0.93349 1.17743 0.90456 0.88475 0.93454 1.19483 1.15098 1.19351 0.95088 0.90557 1.25897 0.93596 0.95960 0.99158 1.69747 1.13762 1.24699 1.35535 0.86228 0.78769 0.79028 0.81806 1.19022 1.20407 1.19055 1.20807 0.97175 1.10123 0.94484 1.20398 0.95949 1.00059 0.93946 1.22956 0.85287 0.98972 0.90124 0.89205 1.21816 1.01529 0.96810 1.00210 1.89174 1.26600 1.74502 1.37957 0.91638 0.90818 0.91512 0.89487 0.88618 0.88144 0.88324 0.76851 0.88962 0.84941 0.91009 0.88484 0.87454 0.90855 0.91211 0.91463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.53 37.16 0.35 -0.56 16 2 C 0.07 0.55 3.91 -25.95 -0.10 0.45 16 3 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 4 C -0.14 -1.14 6.27 -25.17 -0.16 -1.30 16 5 C -0.12 -1.05 3.17 -90.20 -0.29 -1.34 16 6 H 0.13 1.00 7.87 -51.93 -0.41 0.59 16 7 C 0.47 5.47 7.06 36.01 0.25 5.73 16 8 O -0.51 -6.55 15.20 -18.75 -0.28 -6.83 16 9 O -0.32 -4.36 9.76 -45.92 -0.45 -4.80 16 10 C 0.05 0.62 5.95 36.00 0.21 0.84 16 11 C 0.50 8.37 7.74 -10.99 -0.09 8.28 16 12 O -0.51 -10.81 13.92 -14.10 -0.20 -11.01 16 13 N -0.64 -10.71 5.30 -9.74 -0.05 -10.76 16 14 C 0.00 -0.02 6.31 -83.57 -0.53 -0.55 16 15 C -0.12 -2.60 9.90 -39.79 -0.39 -2.99 16 16 C -0.14 -3.57 8.62 -39.26 -0.34 -3.91 16 17 C 0.10 2.67 5.55 -106.80 -0.59 2.08 16 18 C -0.46 -12.07 9.02 -37.86 -0.34 -12.42 16 19 H 0.08 1.92 7.85 -52.48 -0.41 1.51 16 20 C 0.07 1.73 5.42 -17.34 -0.09 1.63 16 21 N -0.81 -20.78 10.60 55.55 0.59 -20.19 16 22 Si 0.92 18.75 29.56 -169.99 -5.03 13.72 16 23 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 24 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 25 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 26 C -0.21 -5.13 9.74 -39.26 -0.38 -5.51 16 27 C -0.08 -1.96 8.61 -39.79 -0.34 -2.30 16 28 C 0.08 0.76 3.28 -25.95 -0.09 0.68 16 29 H 0.09 0.90 6.90 -51.93 -0.36 0.54 16 30 C -0.15 -1.10 9.52 37.15 0.35 -0.75 16 31 O -0.36 -3.52 11.04 -35.23 -0.39 -3.91 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.42 8.13 -51.93 -0.42 0.00 16 35 H 0.09 0.74 7.73 -51.93 -0.40 0.34 16 36 H 0.10 0.69 7.87 -51.93 -0.41 0.29 16 37 H 0.10 1.06 8.13 -51.93 -0.42 0.64 16 38 H 0.10 1.00 8.13 -51.93 -0.42 0.57 16 39 H 0.40 4.94 8.82 -40.82 -0.36 4.58 16 40 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 41 H 0.13 3.44 6.13 -52.48 -0.32 3.12 16 42 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 43 H 0.10 2.29 8.06 -52.49 -0.42 1.87 16 44 H 0.11 2.48 6.22 -52.49 -0.33 2.16 16 45 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 47 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 393.32 15.07 5.93 5.93 Total: -1.00 -31.67 393.32 -9.21 -40.88 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -6.78 Total: 8.92 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: -2.55 Total: -11.95 kcal Atomic # 7 Polarization: -31.48 SS G_CDS: 0.54 Total: -30.95 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -1.32 Total: -26.55 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.72 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.67 -9.21 -40.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869657758.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.054 kcal (2) G-P(sol) polarization free energy of solvation -31.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds