Wall clock time and date at job start Wed Apr 1 2020 04:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34228 * 116.99822 * 2 1 4 4 O 1.20822 * 120.00612 * 0.02562 * 3 2 1 5 5 C 1.50707 * 119.99562 * 180.02562 * 3 2 1 6 6 C 1.53003 * 109.46807 * 180.02562 * 5 3 2 7 7 N 1.46499 * 109.46650 * 180.02562 * 6 5 3 8 8 C 1.36714 * 119.99940 * 269.99371 * 7 6 5 9 9 H 1.08001 * 120.00153 * 134.16704 * 8 7 6 10 10 C 1.39123 * 120.00309 * 314.16793 * 8 7 6 11 11 N 1.31326 * 119.99659 * 2.91092 * 10 8 7 12 12 Si 1.86800 * 120.00331 * 182.91495 * 10 8 7 13 13 H 1.48498 * 109.46964 * 359.97438 * 12 10 8 14 14 H 1.48490 * 109.47510 * 120.00063 * 12 10 8 15 15 H 1.48511 * 109.46885 * 240.00152 * 12 10 8 16 16 C 1.34777 * 120.00319 * 90.00350 * 7 6 5 17 17 O 1.21759 * 119.99518 * 354.92060 * 16 7 6 18 18 C 1.46235 * 120.00377 * 174.92510 * 16 7 6 19 19 C 1.34969 * 119.99721 * 183.39546 * 18 16 7 20 20 C 1.50696 * 120.00421 * 8.23960 * 19 18 16 21 21 C 1.47157 * 119.99620 * 188.24139 * 19 18 16 22 22 C 1.39912 * 120.14620 * 295.02322 * 21 19 18 23 23 C 1.37886 * 119.93552 * 179.97438 * 22 21 19 24 24 C 1.38338 * 120.23616 * 359.72645 * 23 22 21 25 25 C 1.38873 * 120.29497 * 0.54481 * 24 23 22 26 26 O 1.35907 * 119.97334 * 179.72171 * 25 24 23 27 27 C 1.42909 * 116.99666 * 359.73567 * 26 25 24 28 28 C 1.38416 * 120.06078 * 359.45824 * 25 24 23 29 29 H 1.09002 * 109.46761 * 59.99358 * 1 2 3 30 30 H 1.09004 * 109.46733 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46518 * 299.99415 * 1 2 3 32 32 H 1.08995 * 109.47462 * 60.00389 * 5 3 2 33 33 H 1.08999 * 109.47253 * 299.99907 * 5 3 2 34 34 H 1.08995 * 109.47214 * 59.99720 * 6 5 3 35 35 H 1.08999 * 109.46715 * 299.99719 * 6 5 3 36 36 H 0.97005 * 119.99907 * 184.99920 * 11 10 8 37 37 H 1.07996 * 119.99417 * 3.39404 * 18 16 7 38 38 H 1.08996 * 109.47124 * 276.09730 * 20 19 18 39 39 H 1.08997 * 109.47072 * 36.09522 * 20 19 18 40 40 H 1.09004 * 109.47180 * 156.09459 * 20 19 18 41 41 H 1.08001 * 120.03413 * 359.95520 * 22 21 19 42 42 H 1.08003 * 119.88341 * 179.97438 * 23 22 21 43 43 H 1.07998 * 119.85603 * 180.29962 * 24 23 22 44 44 H 1.09000 * 109.46828 * 179.97438 * 27 26 25 45 45 H 1.08994 * 109.46542 * 299.99732 * 27 26 25 46 46 H 1.09004 * 109.46998 * 59.99537 * 27 26 25 47 47 H 1.07994 * 120.11558 * 180.24708 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0002 2.7420 0.0002 7 7 5.4632 2.8186 -0.0010 8 6 6.1468 2.8536 1.1824 9 1 7.0152 2.2271 1.3231 10 6 5.7239 3.6961 2.2056 11 7 4.6353 4.4153 2.0561 12 14 6.7044 3.8044 3.7918 13 1 7.8797 2.9005 3.7100 14 1 7.1666 5.2010 3.9937 15 1 5.8458 3.3972 4.9332 16 6 6.1352 2.8548 -1.1687 17 8 5.5348 2.7308 -2.2207 18 6 7.5854 3.0429 -1.1723 19 6 8.2494 3.1478 -2.3427 20 6 7.4839 3.2580 -3.6361 21 6 9.7209 3.1545 -2.3557 22 6 10.4240 4.2053 -1.7566 23 6 11.8028 4.2070 -1.7709 24 6 12.4945 3.1700 -2.3709 25 6 11.8064 2.1250 -2.9733 26 8 12.4925 1.1124 -3.5658 27 6 13.9191 1.1910 -3.5361 28 6 10.4223 2.1109 -2.9662 29 1 -0.3633 0.5140 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5137 0.8900 32 1 3.9558 0.7810 -0.8908 33 1 3.9565 0.7805 0.8891 34 1 3.6108 3.2356 0.8906 35 1 3.6101 3.2367 -0.8894 36 1 4.3798 5.0560 2.7381 37 1 8.1250 3.0978 -0.2384 38 1 7.2092 2.2614 -3.9817 39 1 6.5818 3.8482 -3.4752 40 1 8.1070 3.7441 -4.3868 41 1 9.8874 5.0145 -1.2837 42 1 12.3448 5.0188 -1.3085 43 1 13.5745 3.1751 -2.3743 44 1 14.3414 0.3227 -4.0419 45 1 14.2433 2.1002 -4.0424 46 1 14.2605 1.2100 -2.5011 47 1 9.8863 1.2967 -3.4309 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871342724.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:04 Heat of formation + Delta-G solvation = -110.936823 kcal Electronic energy + Delta-G solvation = -29933.424064 eV Core-core repulsion = 25661.640857 eV Total energy + Delta-G solvation = -4271.783207 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.08800 -39.98282 -38.79768 -37.56004 -36.15231 -35.24333 -33.82989 -31.95785 -30.88634 -30.60944 -29.34777 -27.71130 -27.35425 -26.82906 -25.08697 -23.82700 -22.55973 -22.20316 -20.42285 -19.64085 -18.90727 -17.56725 -17.06549 -16.38665 -16.19611 -16.13046 -16.08128 -15.89902 -15.82011 -15.76745 -14.70718 -14.17590 -14.07768 -14.01089 -13.60425 -13.53242 -13.30938 -13.17631 -12.77599 -12.59140 -12.38925 -12.25678 -12.09918 -11.94955 -11.81074 -11.61572 -11.40761 -11.32088 -11.18662 -11.06435 -10.92797 -10.80199 -10.61556 -10.49023 -10.36019 -9.99696 -9.94986 -9.11024 -8.95032 -8.42746 -8.32299 -8.07850 -7.49050 -6.36572 -4.25263 1.23034 1.52698 2.12580 2.73835 3.08364 3.12506 3.18609 3.20910 3.22013 3.81191 4.02869 4.37968 4.67887 4.76451 4.94915 4.96092 4.96605 4.99436 5.19798 5.27254 5.28231 5.34514 5.39443 5.41196 5.51903 5.66834 5.69431 5.77010 5.91661 5.98816 6.01928 6.18975 6.29668 6.36360 6.37413 6.38871 6.48846 6.65499 6.77058 6.78476 6.80982 6.94047 7.08654 7.25501 7.29210 7.37822 7.62489 7.93443 8.25119 8.34557 9.00794 9.42595 9.86067 10.59298 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.010821 B = 0.002771 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2586.854485 B =10103.121688 C =11715.412981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.368 6.368 3 C 0.467 3.533 4 O -0.505 6.505 5 C -0.122 4.122 6 C 0.115 3.885 7 N -0.431 5.431 8 C -0.340 4.340 9 H 0.090 0.910 10 C 0.049 3.951 11 N -0.861 5.861 12 Si 0.916 3.084 13 H -0.266 1.266 14 H -0.278 1.278 15 H -0.280 1.280 16 C 0.499 3.501 17 O -0.596 6.596 18 C -0.141 4.141 19 C -0.064 4.064 20 C -0.100 4.100 21 C 0.005 3.995 22 C -0.142 4.142 23 C -0.081 4.081 24 C -0.216 4.216 25 C 0.123 3.877 26 O -0.319 6.319 27 C 0.029 3.971 28 C -0.138 4.138 29 H 0.059 0.941 30 H 0.095 0.905 31 H 0.059 0.941 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.134 0.866 35 H 0.060 0.940 36 H 0.273 0.727 37 H 0.129 0.871 38 H 0.069 0.931 39 H 0.092 0.908 40 H 0.041 0.959 41 H 0.129 0.871 42 H 0.124 0.876 43 H 0.124 0.876 44 H 0.097 0.903 45 H 0.053 0.947 46 H 0.054 0.946 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.172 -4.810 -5.111 12.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.285 6.285 3 C 0.309 3.691 4 O -0.392 6.392 5 C -0.161 4.161 6 C -0.008 4.008 7 N -0.148 5.148 8 C -0.468 4.468 9 H 0.108 0.892 10 C -0.157 4.157 11 N -0.498 5.498 12 Si 0.742 3.258 13 H -0.190 1.190 14 H -0.204 1.204 15 H -0.206 1.206 16 C 0.291 3.709 17 O -0.483 6.483 18 C -0.161 4.161 19 C -0.066 4.066 20 C -0.156 4.156 21 C 0.005 3.995 22 C -0.161 4.161 23 C -0.099 4.099 24 C -0.234 4.234 25 C 0.079 3.921 26 O -0.233 6.233 27 C -0.066 4.066 28 C -0.157 4.157 29 H 0.078 0.922 30 H 0.113 0.887 31 H 0.078 0.922 32 H 0.113 0.887 33 H 0.121 0.879 34 H 0.152 0.848 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.147 0.853 38 H 0.087 0.913 39 H 0.110 0.890 40 H 0.060 0.940 41 H 0.147 0.853 42 H 0.142 0.858 43 H 0.141 0.859 44 H 0.115 0.885 45 H 0.072 0.928 46 H 0.072 0.928 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 9.385 -4.641 -5.530 11.841 hybrid contribution 0.588 0.267 1.164 1.331 sum 9.974 -4.374 -4.366 11.733 Atomic orbital electron populations 1.23155 0.77507 1.02945 1.02291 1.86546 1.22653 1.34565 1.84721 1.24125 0.92444 0.80821 0.71667 1.90642 1.67274 1.36211 1.45051 1.21905 0.85647 1.03660 1.04904 1.21583 0.82265 0.90875 1.06109 1.43226 1.04590 1.62385 1.04607 1.19458 1.12554 1.24068 0.90757 0.89248 1.25624 0.95611 0.94729 0.99776 1.69536 1.21644 1.22818 1.35779 0.86037 0.79859 0.78504 0.81416 1.19043 1.20391 1.20554 1.18379 0.87674 0.80921 0.83896 1.90641 1.70662 1.55718 1.31302 1.23014 0.94916 1.00759 0.97433 1.20831 0.90245 0.99307 0.96248 1.20884 0.99534 1.02751 0.92427 1.18789 0.92670 0.93132 0.94904 1.21367 0.93885 0.99168 1.01648 1.20832 0.94089 0.97402 0.97556 1.21218 0.99846 0.96721 1.05643 1.18852 0.91560 0.87752 0.93979 1.86074 1.19815 1.43679 1.73729 1.23013 0.78725 1.03013 1.01881 1.20491 0.90513 1.00435 1.04269 0.92237 0.88700 0.92189 0.88727 0.87944 0.84847 0.92121 0.91623 0.85268 0.91278 0.88995 0.94024 0.85329 0.85807 0.85861 0.88461 0.92809 0.92755 0.85047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 10.56 101.05 1.07 1.52 16 2 O -0.37 -6.18 10.57 -39.25 -0.41 -6.60 16 3 C 0.47 9.20 7.96 36.01 0.29 9.49 16 4 O -0.51 -11.22 15.73 -18.75 -0.29 -11.52 16 5 C -0.12 -2.49 6.14 -27.88 -0.17 -2.66 16 6 C 0.12 2.77 4.25 -4.04 -0.02 2.76 16 7 N -0.43 -10.51 2.51 -116.46 -0.29 -10.80 16 8 C -0.34 -8.23 8.09 -15.05 -0.12 -8.36 16 9 H 0.09 2.08 7.27 -52.49 -0.38 1.69 16 10 C 0.05 1.19 5.38 -17.44 -0.09 1.09 16 11 N -0.86 -22.25 10.78 55.50 0.60 -21.65 16 12 Si 0.92 18.80 29.56 -169.99 -5.02 13.78 16 13 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 14 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 15 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 16 C 0.50 11.79 7.44 -13.05 -0.10 11.69 16 17 O -0.60 -14.73 12.92 5.14 0.07 -14.67 16 18 C -0.14 -2.88 8.92 -37.53 -0.33 -3.21 16 19 C -0.06 -1.15 5.48 -102.17 -0.56 -1.71 16 20 C -0.10 -1.76 8.45 36.00 0.30 -1.46 16 21 C 0.01 0.08 5.28 -105.07 -0.56 -0.47 16 22 C -0.14 -2.04 9.72 -39.08 -0.38 -2.42 16 23 C -0.08 -0.98 10.02 -39.67 -0.40 -1.38 16 24 C -0.22 -2.56 9.04 -39.31 -0.36 -2.91 16 25 C 0.12 1.67 6.68 -39.28 -0.26 1.40 16 26 O -0.32 -3.96 10.49 -19.45 -0.20 -4.16 16 27 C 0.03 0.23 9.81 101.05 0.99 1.22 16 28 C -0.14 -2.07 9.72 -38.94 -0.38 -2.45 16 29 H 0.06 0.75 8.13 -51.93 -0.42 0.32 16 30 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 32 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 33 H 0.10 2.00 8.14 -51.93 -0.42 1.57 16 34 H 0.13 3.51 5.17 -51.93 -0.27 3.24 16 35 H 0.06 1.55 7.45 -51.93 -0.39 1.17 16 36 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 37 H 0.13 2.59 6.78 -52.49 -0.36 2.24 16 38 H 0.07 1.23 8.03 -51.93 -0.42 0.81 16 39 H 0.09 1.84 6.21 -51.93 -0.32 1.52 16 40 H 0.04 0.63 8.08 -51.93 -0.42 0.22 16 41 H 0.13 1.79 8.06 -52.49 -0.42 1.36 16 42 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 43 H 0.12 1.13 6.27 -52.49 -0.33 0.80 16 44 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.05 0.36 7.67 -51.93 -0.40 -0.04 16 46 H 0.05 0.38 7.64 -51.93 -0.40 -0.02 16 47 H 0.13 1.92 8.06 -52.49 -0.42 1.49 16 LS Contribution 398.71 15.07 6.01 6.01 Total: -1.00 -30.00 398.71 -7.25 -37.25 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -6.62 Total: 10.23 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: -1.08 Total: 2.14 kcal Atomic # 7 Polarization: -32.76 SS G_CDS: 0.31 Total: -32.45 kcal Atomic # 8 Polarization: -36.09 SS G_CDS: -0.85 Total: -36.94 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.02 Total: 13.78 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -30.00 -7.25 -37.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871342724.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.691 kcal (2) G-P(sol) polarization free energy of solvation -29.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds