Wall clock time and date at job start Wed Apr 1 2020 04:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34228 * 116.99822 * 2 1 4 4 O 1.20822 * 120.00612 * 0.02562 * 3 2 1 5 5 C 1.50707 * 119.99562 * 180.02562 * 3 2 1 6 6 C 1.53003 * 109.46807 * 180.02562 * 5 3 2 7 7 N 1.46499 * 109.46650 * 180.02562 * 6 5 3 8 8 C 1.36714 * 119.99940 * 269.99371 * 7 6 5 9 9 H 1.08001 * 120.00153 * 134.16704 * 8 7 6 10 10 C 1.39123 * 120.00309 * 314.16793 * 8 7 6 11 11 N 1.31326 * 119.99659 * 2.91092 * 10 8 7 12 12 Si 1.86800 * 120.00331 * 182.91495 * 10 8 7 13 13 H 1.48498 * 109.46964 * 359.97438 * 12 10 8 14 14 H 1.48490 * 109.47510 * 120.00063 * 12 10 8 15 15 H 1.48511 * 109.46885 * 240.00152 * 12 10 8 16 16 C 1.34777 * 120.00319 * 90.00350 * 7 6 5 17 17 O 1.21759 * 119.99518 * 354.92060 * 16 7 6 18 18 C 1.46235 * 120.00377 * 174.92510 * 16 7 6 19 19 C 1.34969 * 119.99721 * 183.39546 * 18 16 7 20 20 C 1.50696 * 120.00421 * 8.23960 * 19 18 16 21 21 C 1.47157 * 119.99620 * 188.24139 * 19 18 16 22 22 C 1.39912 * 120.14620 * 295.02322 * 21 19 18 23 23 C 1.37886 * 119.93552 * 179.97438 * 22 21 19 24 24 C 1.38338 * 120.23616 * 359.72645 * 23 22 21 25 25 C 1.38873 * 120.29497 * 0.54481 * 24 23 22 26 26 O 1.35907 * 119.97334 * 179.72171 * 25 24 23 27 27 C 1.42909 * 116.99666 * 359.73567 * 26 25 24 28 28 C 1.38416 * 120.06078 * 359.45824 * 25 24 23 29 29 H 1.09002 * 109.46761 * 59.99358 * 1 2 3 30 30 H 1.09004 * 109.46733 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46518 * 299.99415 * 1 2 3 32 32 H 1.08995 * 109.47462 * 60.00389 * 5 3 2 33 33 H 1.08999 * 109.47253 * 299.99907 * 5 3 2 34 34 H 1.08995 * 109.47214 * 59.99720 * 6 5 3 35 35 H 1.08999 * 109.46715 * 299.99719 * 6 5 3 36 36 H 0.97005 * 119.99907 * 184.99920 * 11 10 8 37 37 H 1.07996 * 119.99417 * 3.39404 * 18 16 7 38 38 H 1.08996 * 109.47124 * 276.09730 * 20 19 18 39 39 H 1.08997 * 109.47072 * 36.09522 * 20 19 18 40 40 H 1.09004 * 109.47180 * 156.09459 * 20 19 18 41 41 H 1.08001 * 120.03413 * 359.95520 * 22 21 19 42 42 H 1.08003 * 119.88341 * 179.97438 * 23 22 21 43 43 H 1.07998 * 119.85603 * 180.29962 * 24 23 22 44 44 H 1.09000 * 109.46828 * 179.97438 * 27 26 25 45 45 H 1.08994 * 109.46542 * 299.99732 * 27 26 25 46 46 H 1.09004 * 109.46998 * 59.99537 * 27 26 25 47 47 H 1.07994 * 120.11558 * 180.24708 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0002 2.7420 0.0002 7 7 5.4632 2.8186 -0.0010 8 6 6.1468 2.8536 1.1824 9 1 7.0152 2.2271 1.3231 10 6 5.7239 3.6961 2.2056 11 7 4.6353 4.4153 2.0561 12 14 6.7044 3.8044 3.7918 13 1 7.8797 2.9005 3.7100 14 1 7.1666 5.2010 3.9937 15 1 5.8458 3.3972 4.9332 16 6 6.1352 2.8548 -1.1687 17 8 5.5348 2.7308 -2.2207 18 6 7.5854 3.0429 -1.1723 19 6 8.2494 3.1478 -2.3427 20 6 7.4839 3.2580 -3.6361 21 6 9.7209 3.1545 -2.3557 22 6 10.4240 4.2053 -1.7566 23 6 11.8028 4.2070 -1.7709 24 6 12.4945 3.1700 -2.3709 25 6 11.8064 2.1250 -2.9733 26 8 12.4925 1.1124 -3.5658 27 6 13.9191 1.1910 -3.5361 28 6 10.4223 2.1109 -2.9662 29 1 -0.3633 0.5140 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5137 0.8900 32 1 3.9558 0.7810 -0.8908 33 1 3.9565 0.7805 0.8891 34 1 3.6108 3.2356 0.8906 35 1 3.6101 3.2367 -0.8894 36 1 4.3798 5.0560 2.7381 37 1 8.1250 3.0978 -0.2384 38 1 7.2092 2.2614 -3.9817 39 1 6.5818 3.8482 -3.4752 40 1 8.1070 3.7441 -4.3868 41 1 9.8874 5.0145 -1.2837 42 1 12.3448 5.0188 -1.3085 43 1 13.5745 3.1751 -2.3743 44 1 14.3414 0.3227 -4.0419 45 1 14.2433 2.1002 -4.0424 46 1 14.2605 1.2100 -2.5011 47 1 9.8863 1.2967 -3.4309 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871342724.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:03 Heat of formation + Delta-G solvation = -126.258387 kcal Electronic energy + Delta-G solvation = -29934.088457 eV Core-core repulsion = 25661.640857 eV Total energy + Delta-G solvation = -4272.447600 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.55425 -41.08794 -40.50233 -38.65515 -37.66711 -36.97938 -35.29216 -33.79268 -32.57897 -31.69273 -30.48999 -29.04855 -28.32577 -28.03375 -26.91775 -25.35939 -23.88683 -23.23744 -21.91908 -21.29060 -20.40036 -19.00048 -18.44478 -18.04370 -17.72226 -17.59793 -17.48109 -17.12457 -16.83398 -16.60162 -16.32856 -15.85699 -15.66829 -15.40091 -14.94607 -14.73888 -14.63251 -14.46807 -14.12629 -13.97166 -13.89335 -13.73018 -13.34589 -13.30111 -13.07826 -13.03310 -12.83041 -12.76985 -12.64562 -12.53369 -12.28439 -11.99439 -11.94217 -11.90013 -11.77634 -11.77213 -11.58495 -10.96628 -10.29253 -10.18435 -9.65791 -9.35193 -9.13934 -8.21975 -6.16990 0.05634 0.49259 0.66517 1.14355 1.46998 1.49543 1.62059 1.70905 2.30769 2.37633 2.58337 2.76674 3.06447 3.13180 3.74901 3.88879 3.89690 4.13742 4.15484 4.20960 4.29903 4.31682 4.31800 4.34048 4.37892 4.44892 4.54209 4.59570 4.62743 4.68559 4.70615 4.72434 4.78335 4.89181 5.02732 5.03663 5.23141 5.28825 5.29173 5.38000 5.43437 5.48729 5.61166 5.68202 5.71176 5.84915 6.07624 6.45355 6.47754 6.71392 7.12827 7.57329 8.00614 8.74917 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.010821 B = 0.002771 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2586.854485 B =10103.121688 C =11715.412981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.364 6.364 3 C 0.474 3.526 4 O -0.536 6.536 5 C -0.112 4.112 6 C 0.122 3.878 7 N -0.445 5.445 8 C -0.347 4.347 9 H 0.098 0.902 10 C 0.006 3.994 11 N -0.898 5.898 12 Si 0.984 3.016 13 H -0.253 1.253 14 H -0.279 1.279 15 H -0.281 1.281 16 C 0.491 3.509 17 O -0.618 6.618 18 C -0.174 4.174 19 C -0.028 4.028 20 C -0.098 4.098 21 C -0.019 4.019 22 C -0.153 4.153 23 C -0.074 4.074 24 C -0.204 4.204 25 C 0.120 3.880 26 O -0.338 6.338 27 C 0.018 3.982 28 C -0.153 4.153 29 H 0.060 0.940 30 H 0.138 0.862 31 H 0.060 0.940 32 H 0.098 0.902 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.031 0.969 36 H 0.272 0.728 37 H 0.131 0.869 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.127 0.873 42 H 0.156 0.844 43 H 0.158 0.842 44 H 0.117 0.883 45 H 0.068 0.932 46 H 0.066 0.934 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.293 -5.686 -4.823 15.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C 0.318 3.682 4 O -0.426 6.426 5 C -0.151 4.151 6 C -0.002 4.002 7 N -0.162 5.162 8 C -0.475 4.475 9 H 0.116 0.884 10 C -0.196 4.196 11 N -0.535 5.535 12 Si 0.808 3.192 13 H -0.176 1.176 14 H -0.204 1.204 15 H -0.206 1.206 16 C 0.285 3.715 17 O -0.507 6.507 18 C -0.195 4.195 19 C -0.031 4.031 20 C -0.154 4.154 21 C -0.019 4.019 22 C -0.172 4.172 23 C -0.092 4.092 24 C -0.223 4.223 25 C 0.075 3.925 26 O -0.252 6.252 27 C -0.077 4.077 28 C -0.172 4.172 29 H 0.079 0.921 30 H 0.156 0.844 31 H 0.079 0.921 32 H 0.116 0.884 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.050 0.950 36 H 0.083 0.917 37 H 0.149 0.851 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.145 0.855 42 H 0.174 0.826 43 H 0.175 0.825 44 H 0.135 0.865 45 H 0.086 0.914 46 H 0.084 0.916 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 12.520 -5.554 -5.251 14.668 hybrid contribution -0.299 0.477 0.908 1.068 sum 12.221 -5.077 -4.343 13.928 Atomic orbital electron populations 1.23582 0.74805 1.05862 1.02434 1.86511 1.25168 1.32444 1.83909 1.23843 0.92091 0.81255 0.71012 1.90631 1.67810 1.37441 1.46674 1.21665 0.86747 1.01201 1.05505 1.21310 0.82597 0.92849 1.03474 1.43402 1.04586 1.63050 1.05151 1.19731 1.12673 1.24334 0.90769 0.88442 1.26437 0.96254 0.94139 1.02788 1.69691 1.23202 1.23707 1.36930 0.85000 0.78675 0.78445 0.77125 1.17621 1.20425 1.20644 1.18897 0.89020 0.80211 0.83388 1.90612 1.71500 1.56751 1.31842 1.22777 0.93120 1.05066 0.98514 1.21071 0.91903 0.94759 0.95321 1.20829 0.98944 1.02414 0.93184 1.18652 0.91074 0.94838 0.97346 1.21456 0.95163 0.98791 1.01754 1.21180 0.93119 0.98210 0.96685 1.21607 1.01559 0.95402 1.03689 1.18925 0.91177 0.88502 0.93920 1.86059 1.22260 1.43395 1.73454 1.23369 0.76234 1.04839 1.03214 1.20467 0.91705 1.00202 1.04780 0.92147 0.84374 0.92120 0.88361 0.86918 0.86946 0.95038 0.91743 0.85122 0.91376 0.91617 0.91373 0.85511 0.82595 0.82495 0.86458 0.91353 0.91574 0.85686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 10.56 113.37 1.20 1.83 16 2 O -0.36 -12.01 10.57 -51.40 -0.54 -12.55 16 3 C 0.47 19.13 7.96 71.24 0.57 19.70 16 4 O -0.54 -24.71 15.73 21.98 0.35 -24.36 16 5 C -0.11 -4.75 6.14 29.85 0.18 -4.56 16 6 C 0.12 6.19 4.25 86.38 0.37 6.56 16 7 N -0.44 -22.69 2.51 -640.57 -1.61 -24.29 16 8 C -0.35 -17.23 8.09 84.14 0.68 -16.55 16 9 H 0.10 4.58 7.27 -2.91 -0.02 4.55 16 10 C 0.01 0.32 5.38 84.98 0.46 0.77 16 11 N -0.90 -48.07 10.78 21.69 0.23 -47.84 16 12 Si 0.98 38.68 29.56 68.60 2.03 40.71 16 13 H -0.25 -9.29 7.11 99.48 0.71 -8.59 16 14 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 15 H -0.28 -11.00 7.11 99.48 0.71 -10.29 16 16 C 0.49 24.35 7.44 86.32 0.64 24.99 16 17 O -0.62 -32.23 12.92 -4.54 -0.06 -32.29 16 18 C -0.17 -7.38 8.92 23.60 0.21 -7.17 16 19 C -0.03 -1.03 5.48 -18.27 -0.10 -1.13 16 20 C -0.10 -3.52 8.45 71.23 0.60 -2.92 16 21 C -0.02 -0.59 5.28 -20.16 -0.11 -0.69 16 22 C -0.15 -4.17 9.72 22.59 0.22 -3.95 16 23 C -0.07 -1.56 10.02 22.21 0.22 -1.33 16 24 C -0.20 -4.07 9.04 22.45 0.20 -3.87 16 25 C 0.12 2.96 6.68 22.46 0.15 3.11 16 26 O -0.34 -7.55 10.49 -92.50 -0.97 -8.52 16 27 C 0.02 0.21 9.81 113.37 1.11 1.32 16 28 C -0.15 -4.44 9.72 22.69 0.22 -4.22 16 29 H 0.06 1.46 8.13 -2.39 -0.02 1.45 16 30 H 0.14 2.14 8.14 -2.38 -0.02 2.12 16 31 H 0.06 1.48 8.13 -2.39 -0.02 1.46 16 32 H 0.10 4.06 8.14 -2.39 -0.02 4.04 16 33 H 0.11 4.49 8.14 -2.39 -0.02 4.47 16 34 H 0.11 6.26 5.17 -2.39 -0.01 6.25 16 35 H 0.03 1.73 7.45 -2.39 -0.02 1.71 16 36 H 0.27 13.82 8.31 -92.70 -0.77 13.05 16 37 H 0.13 5.41 6.78 -2.91 -0.02 5.39 16 38 H 0.07 2.49 8.03 -2.39 -0.02 2.47 16 39 H 0.07 2.76 6.21 -2.39 -0.01 2.74 16 40 H 0.07 2.07 8.08 -2.38 -0.02 2.05 16 41 H 0.13 3.42 8.06 -2.91 -0.02 3.40 16 42 H 0.16 2.26 8.06 -2.91 -0.02 2.24 16 43 H 0.16 2.04 6.27 -2.91 -0.02 2.03 16 44 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.07 0.64 7.67 -2.39 -0.02 0.62 16 46 H 0.07 0.65 7.64 -2.38 -0.02 0.63 16 47 H 0.13 3.66 8.06 -2.91 -0.02 3.64 16 Total: -1.00 -68.36 398.71 7.24 -61.12 By element: Atomic # 1 Polarization: 35.15 SS G_CDS: 0.98 Total: 36.13 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: 6.83 Total: 11.89 kcal Atomic # 7 Polarization: -70.76 SS G_CDS: -1.37 Total: -72.13 kcal Atomic # 8 Polarization: -76.49 SS G_CDS: -1.23 Total: -77.72 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 2.03 Total: 40.71 kcal Total: -68.36 7.24 -61.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871342724.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.134 kcal (2) G-P(sol) polarization free energy of solvation -68.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds