Wall clock time and date at job start Wed Apr 1 2020 04:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34226 * 117.00299 * 2 1 4 4 O 1.20818 * 119.99981 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99775 * 179.97438 * 3 2 1 6 6 C 1.52996 * 109.47008 * 179.97438 * 5 3 2 7 7 N 1.46501 * 109.47335 * 180.02562 * 6 5 3 8 8 C 1.36713 * 119.99660 * 264.53572 * 7 6 5 9 9 H 1.08006 * 119.99951 * 145.13624 * 8 7 6 10 10 C 1.39129 * 120.00270 * 325.13333 * 8 7 6 11 11 N 1.31326 * 119.99673 * 338.49299 * 10 8 7 12 12 Si 1.86795 * 119.99889 * 158.49295 * 10 8 7 13 13 H 1.48499 * 109.47534 * 60.00176 * 12 10 8 14 14 H 1.48501 * 109.47154 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47183 * 299.99790 * 12 10 8 16 16 C 1.34777 * 120.00107 * 84.53353 * 7 6 5 17 17 O 1.21750 * 120.00141 * 0.02562 * 16 7 6 18 18 C 1.46230 * 119.99700 * 180.02562 * 16 7 6 19 19 C 1.34975 * 119.99945 * 179.97438 * 18 16 7 20 20 C 1.50700 * 120.00527 * 180.02562 * 19 18 16 21 21 C 1.47155 * 119.99813 * 0.02562 * 19 18 16 22 22 C 1.39916 * 120.14701 * 294.99430 * 21 19 18 23 23 C 1.37879 * 119.93893 * 180.02562 * 22 21 19 24 24 C 1.38344 * 120.23129 * 359.97438 * 23 22 21 25 25 C 1.38871 * 120.29898 * 359.97438 * 24 23 22 26 26 O 1.35909 * 119.96702 * 179.97438 * 25 24 23 27 27 C 1.42897 * 117.00148 * 0.02562 * 26 25 24 28 28 C 1.38400 * 120.06083 * 0.02562 * 25 24 23 29 29 H 1.08998 * 109.46841 * 300.00980 * 1 2 3 30 30 H 1.09001 * 109.46305 * 59.99963 * 1 2 3 31 31 H 1.08990 * 109.47400 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47267 * 59.99549 * 5 3 2 33 33 H 1.08999 * 109.47465 * 299.99532 * 5 3 2 34 34 H 1.09003 * 109.47387 * 59.99730 * 6 5 3 35 35 H 1.09009 * 109.47324 * 299.99605 * 6 5 3 36 36 H 0.97002 * 119.99265 * 179.97438 * 11 10 8 37 37 H 1.08002 * 120.00286 * 0.02562 * 18 16 7 38 38 H 1.08998 * 109.46895 * 270.00611 * 20 19 18 39 39 H 1.09004 * 109.46629 * 30.00238 * 20 19 18 40 40 H 1.08993 * 109.47771 * 150.00310 * 20 19 18 41 41 H 1.07997 * 120.02703 * 359.97438 * 22 21 19 42 42 H 1.07998 * 119.88420 * 179.97438 * 23 22 21 43 43 H 1.08003 * 119.84722 * 180.02562 * 24 23 22 44 44 H 1.09000 * 109.47435 * 59.99894 * 27 26 25 45 45 H 1.09006 * 109.47376 * 180.02562 * 27 26 25 46 46 H 1.09005 * 109.47166 * 299.99558 * 27 26 25 47 47 H 1.08000 * 120.12016 * 179.72820 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2092 -0.0005 5 6 3.5664 1.2747 0.0006 6 6 4.0003 2.7418 -0.0002 7 7 5.4633 2.8184 -0.0002 8 6 6.1400 2.9674 1.1783 9 1 7.1008 2.4928 1.3131 10 6 5.5910 3.7303 2.2041 11 7 4.6751 4.6318 1.9339 12 14 6.1569 3.4724 3.9655 13 1 7.6147 3.7386 4.0612 14 1 5.4246 4.4027 4.8619 15 1 5.8817 2.0714 4.3737 16 6 6.1421 2.7420 -1.1621 17 8 5.5395 2.6098 -2.2117 18 6 7.6025 2.8180 -1.1620 19 6 8.2823 2.7409 -2.3254 20 6 9.7873 2.8186 -2.3254 21 6 7.5539 2.5811 -3.5940 22 6 6.8189 1.4163 -3.8404 23 6 6.1384 1.2709 -5.0307 24 6 6.1791 2.2733 -5.9833 25 6 6.9047 3.4339 -5.7485 26 8 6.9404 4.4141 -6.6893 27 6 6.2084 4.1835 -7.8946 28 6 7.5923 3.5927 -4.5580 29 1 -0.3633 0.5140 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.9565 0.7803 -0.8891 33 1 3.9558 0.7808 0.8908 34 1 3.6102 3.2366 0.8893 35 1 3.6111 3.2354 -0.8907 36 1 4.2921 5.1634 2.6492 37 1 8.1371 2.9348 -0.2309 38 1 10.0974 3.8589 -2.4238 39 1 10.1720 2.4116 -1.3903 40 1 10.1810 2.2415 -3.1621 41 1 6.7853 0.6316 -3.0991 42 1 5.5717 0.3712 -5.2201 43 1 5.6434 2.1530 -6.9134 44 1 5.1537 4.0430 -7.6581 45 1 6.3212 5.0411 -8.5580 46 1 6.5924 3.2904 -8.3877 47 1 8.1604 4.4930 -4.3762 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871342726.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:07 Heat of formation + Delta-G solvation = -103.276996 kcal Electronic energy + Delta-G solvation = -30884.055115 eV Core-core repulsion = 26612.604062 eV Total energy + Delta-G solvation = -4271.451052 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.06532 -39.75397 -38.73671 -37.17953 -36.16032 -35.01989 -33.97944 -32.00529 -30.88186 -30.29352 -29.06542 -27.85719 -27.10981 -26.99221 -25.07929 -23.68026 -22.32579 -21.84896 -20.47157 -19.52940 -18.80006 -17.69940 -17.14681 -16.32154 -16.16572 -16.04062 -15.88304 -15.81451 -15.50603 -15.47919 -14.63897 -14.39031 -13.83355 -13.74855 -13.50233 -13.34116 -13.13323 -13.07159 -12.79887 -12.60916 -12.32119 -12.21291 -12.08893 -11.96150 -11.86769 -11.64344 -11.50302 -11.28412 -11.08125 -11.00446 -10.81505 -10.58954 -10.54746 -10.49123 -10.37156 -10.09029 -9.99967 -9.20439 -8.84520 -8.40760 -8.10073 -7.60773 -7.35693 -6.45447 -4.11265 1.59235 2.01479 2.26691 2.66768 3.04336 3.11290 3.17631 3.18241 3.54725 4.02063 4.30152 4.36955 4.75068 4.96532 5.07608 5.13302 5.21965 5.23187 5.29294 5.29998 5.34366 5.39227 5.51854 5.61354 5.66383 5.77493 5.82500 5.84299 5.89405 5.93551 5.97014 6.07839 6.24095 6.28432 6.32147 6.47698 6.69974 6.72350 6.82258 6.87211 6.99302 7.05559 7.20659 7.27718 7.29337 7.42300 7.78409 7.80918 8.17605 8.28492 8.99451 9.45116 9.88738 10.55037 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.008391 B = 0.003877 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3336.288650 B = 7220.361071 C = 9535.146448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.367 6.367 3 C 0.466 3.534 4 O -0.505 6.505 5 C -0.124 4.124 6 C 0.128 3.872 7 N -0.425 5.425 8 C -0.348 4.348 9 H 0.094 0.906 10 C 0.044 3.956 11 N -0.847 5.847 12 Si 0.913 3.087 13 H -0.270 1.270 14 H -0.283 1.283 15 H -0.271 1.271 16 C 0.484 3.516 17 O -0.585 6.585 18 C -0.141 4.141 19 C -0.072 4.072 20 C -0.107 4.107 21 C 0.024 3.976 22 C -0.075 4.075 23 C -0.092 4.092 24 C -0.213 4.213 25 C 0.112 3.888 26 O -0.324 6.324 27 C 0.032 3.968 28 C -0.142 4.142 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.116 0.884 35 H 0.064 0.936 36 H 0.273 0.727 37 H 0.132 0.868 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.116 0.884 44 H 0.052 0.948 45 H 0.093 0.907 46 H 0.050 0.950 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.367 -7.169 -8.655 11.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.284 6.284 3 C 0.309 3.691 4 O -0.392 6.392 5 C -0.162 4.162 6 C 0.004 3.996 7 N -0.141 5.141 8 C -0.475 4.475 9 H 0.112 0.888 10 C -0.163 4.163 11 N -0.482 5.482 12 Si 0.739 3.261 13 H -0.196 1.196 14 H -0.208 1.208 15 H -0.197 1.197 16 C 0.276 3.724 17 O -0.472 6.472 18 C -0.161 4.161 19 C -0.075 4.075 20 C -0.164 4.164 21 C 0.024 3.976 22 C -0.094 4.094 23 C -0.111 4.111 24 C -0.232 4.232 25 C 0.068 3.932 26 O -0.238 6.238 27 C -0.064 4.064 28 C -0.160 4.160 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.114 0.886 32 H 0.117 0.883 33 H 0.121 0.879 34 H 0.134 0.866 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.150 0.850 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.131 0.869 42 H 0.132 0.868 43 H 0.134 0.866 44 H 0.071 0.929 45 H 0.111 0.889 46 H 0.069 0.931 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.771 -6.574 -9.011 11.294 hybrid contribution -0.416 -0.061 1.023 1.106 sum 1.355 -6.635 -7.988 10.472 Atomic orbital electron populations 1.23163 0.77402 1.03000 1.02327 1.86539 1.22722 1.34459 1.84687 1.24082 0.92407 0.80875 0.71738 1.90652 1.67267 1.36222 1.45013 1.21894 0.85818 1.03395 1.05143 1.21167 0.82199 0.90808 1.05417 1.43317 1.04509 1.60968 1.05348 1.19402 1.05912 1.31383 0.90851 0.88821 1.25431 0.96860 0.93465 1.00594 1.69897 1.27138 1.17451 1.33723 0.86217 0.79121 0.78556 0.82165 1.19554 1.20847 1.19677 1.18399 0.88041 0.82248 0.83757 1.90759 1.70345 1.55605 1.30515 1.23132 0.95013 1.00553 0.97413 1.20834 0.94801 1.00022 0.91861 1.20750 0.91066 1.02148 1.02415 1.18390 0.94692 0.93045 0.91478 1.20829 0.95967 0.97061 0.95535 1.20600 0.98707 0.98101 0.93648 1.21029 1.05303 0.95393 1.01429 1.18703 0.97203 0.87866 0.89464 1.86023 1.69439 1.41729 1.26610 1.22933 0.95962 1.02264 0.85235 1.20275 1.03790 1.00069 0.91897 0.92171 0.92205 0.88636 0.88316 0.87923 0.86634 0.91754 0.91632 0.85036 0.91228 0.91333 0.91836 0.86917 0.86764 0.86638 0.92949 0.88868 0.93122 0.86091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.56 101.05 1.07 1.51 16 2 O -0.37 -6.04 10.56 -39.25 -0.41 -6.45 16 3 C 0.47 9.04 7.96 36.01 0.29 9.32 16 4 O -0.50 -11.13 15.73 -18.74 -0.29 -11.42 16 5 C -0.12 -2.46 6.10 -27.88 -0.17 -2.63 16 6 C 0.13 3.06 4.18 -4.04 -0.02 3.04 16 7 N -0.42 -10.26 2.54 -116.46 -0.30 -10.56 16 8 C -0.35 -8.35 8.53 -15.05 -0.13 -8.48 16 9 H 0.09 2.10 6.65 -52.48 -0.35 1.75 16 10 C 0.04 1.08 4.93 -17.44 -0.09 0.99 16 11 N -0.85 -22.16 11.35 55.51 0.63 -21.53 16 12 Si 0.91 18.66 29.60 -169.99 -5.03 13.63 16 13 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 14 H -0.28 -5.88 7.11 56.52 0.40 -5.47 16 15 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 16 C 0.48 11.30 7.40 -13.05 -0.10 11.20 16 17 O -0.59 -14.38 11.86 5.14 0.06 -14.32 16 18 C -0.14 -2.79 8.94 -37.53 -0.34 -3.13 16 19 C -0.07 -1.26 5.49 -102.16 -0.56 -1.82 16 20 C -0.11 -1.41 10.02 36.01 0.36 -1.05 16 21 C 0.02 0.45 3.83 -105.07 -0.40 0.04 16 22 C -0.08 -1.36 6.95 -39.09 -0.27 -1.63 16 23 C -0.09 -1.52 10.02 -39.67 -0.40 -1.92 16 24 C -0.21 -3.40 9.04 -39.31 -0.36 -3.76 16 25 C 0.11 1.93 6.68 -39.29 -0.26 1.67 16 26 O -0.32 -5.08 10.49 -19.45 -0.20 -5.29 16 27 C 0.03 0.34 9.81 101.05 0.99 1.33 16 28 C -0.14 -2.57 9.72 -38.94 -0.38 -2.95 16 29 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 30 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 31 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.10 1.92 8.14 -51.93 -0.42 1.49 16 33 H 0.10 1.92 8.14 -51.93 -0.42 1.50 16 34 H 0.12 3.01 5.34 -51.93 -0.28 2.73 16 35 H 0.06 1.67 7.55 -51.92 -0.39 1.28 16 36 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 37 H 0.13 2.48 6.45 -52.49 -0.34 2.14 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.07 0.81 8.08 -51.93 -0.42 0.39 16 40 H 0.06 0.75 8.11 -51.93 -0.42 0.33 16 41 H 0.11 2.01 8.05 -52.49 -0.42 1.58 16 42 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 43 H 0.12 1.53 6.28 -52.48 -0.33 1.20 16 44 H 0.05 0.56 7.66 -51.93 -0.40 0.16 16 45 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 47 H 0.12 2.08 8.06 -52.49 -0.42 1.65 16 LS Contribution 396.83 15.07 5.98 5.98 Total: -1.00 -30.95 396.83 -7.01 -37.96 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -6.68 Total: 10.25 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -0.76 Total: 1.75 kcal Atomic # 7 Polarization: -32.43 SS G_CDS: 0.33 Total: -32.09 kcal Atomic # 8 Polarization: -36.63 SS G_CDS: -0.85 Total: -37.48 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.63 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.95 -7.01 -37.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871342726.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.312 kcal (2) G-P(sol) polarization free energy of solvation -30.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds