Wall clock time and date at job start Wed Apr 1 2020 04:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34226 * 117.00299 * 2 1 4 4 O 1.20818 * 119.99981 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99775 * 179.97438 * 3 2 1 6 6 C 1.52996 * 109.47008 * 179.97438 * 5 3 2 7 7 N 1.46501 * 109.47335 * 180.02562 * 6 5 3 8 8 C 1.36713 * 119.99660 * 264.53572 * 7 6 5 9 9 H 1.08006 * 119.99951 * 145.13624 * 8 7 6 10 10 C 1.39129 * 120.00270 * 325.13333 * 8 7 6 11 11 N 1.31326 * 119.99673 * 338.49299 * 10 8 7 12 12 Si 1.86795 * 119.99889 * 158.49295 * 10 8 7 13 13 H 1.48499 * 109.47534 * 60.00176 * 12 10 8 14 14 H 1.48501 * 109.47154 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47183 * 299.99790 * 12 10 8 16 16 C 1.34777 * 120.00107 * 84.53353 * 7 6 5 17 17 O 1.21750 * 120.00141 * 0.02562 * 16 7 6 18 18 C 1.46230 * 119.99700 * 180.02562 * 16 7 6 19 19 C 1.34975 * 119.99945 * 179.97438 * 18 16 7 20 20 C 1.50700 * 120.00527 * 180.02562 * 19 18 16 21 21 C 1.47155 * 119.99813 * 0.02562 * 19 18 16 22 22 C 1.39916 * 120.14701 * 294.99430 * 21 19 18 23 23 C 1.37879 * 119.93893 * 180.02562 * 22 21 19 24 24 C 1.38344 * 120.23129 * 359.97438 * 23 22 21 25 25 C 1.38871 * 120.29898 * 359.97438 * 24 23 22 26 26 O 1.35909 * 119.96702 * 179.97438 * 25 24 23 27 27 C 1.42897 * 117.00148 * 0.02562 * 26 25 24 28 28 C 1.38400 * 120.06083 * 0.02562 * 25 24 23 29 29 H 1.08998 * 109.46841 * 300.00980 * 1 2 3 30 30 H 1.09001 * 109.46305 * 59.99963 * 1 2 3 31 31 H 1.08990 * 109.47400 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47267 * 59.99549 * 5 3 2 33 33 H 1.08999 * 109.47465 * 299.99532 * 5 3 2 34 34 H 1.09003 * 109.47387 * 59.99730 * 6 5 3 35 35 H 1.09009 * 109.47324 * 299.99605 * 6 5 3 36 36 H 0.97002 * 119.99265 * 179.97438 * 11 10 8 37 37 H 1.08002 * 120.00286 * 0.02562 * 18 16 7 38 38 H 1.08998 * 109.46895 * 270.00611 * 20 19 18 39 39 H 1.09004 * 109.46629 * 30.00238 * 20 19 18 40 40 H 1.08993 * 109.47771 * 150.00310 * 20 19 18 41 41 H 1.07997 * 120.02703 * 359.97438 * 22 21 19 42 42 H 1.07998 * 119.88420 * 179.97438 * 23 22 21 43 43 H 1.08003 * 119.84722 * 180.02562 * 24 23 22 44 44 H 1.09000 * 109.47435 * 59.99894 * 27 26 25 45 45 H 1.09006 * 109.47376 * 180.02562 * 27 26 25 46 46 H 1.09005 * 109.47166 * 299.99558 * 27 26 25 47 47 H 1.08000 * 120.12016 * 179.72820 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2092 -0.0005 5 6 3.5664 1.2747 0.0006 6 6 4.0003 2.7418 -0.0002 7 7 5.4633 2.8184 -0.0002 8 6 6.1400 2.9674 1.1783 9 1 7.1008 2.4928 1.3131 10 6 5.5910 3.7303 2.2041 11 7 4.6751 4.6318 1.9339 12 14 6.1569 3.4724 3.9655 13 1 7.6147 3.7386 4.0612 14 1 5.4246 4.4027 4.8619 15 1 5.8817 2.0714 4.3737 16 6 6.1421 2.7420 -1.1621 17 8 5.5395 2.6098 -2.2117 18 6 7.6025 2.8180 -1.1620 19 6 8.2823 2.7409 -2.3254 20 6 9.7873 2.8186 -2.3254 21 6 7.5539 2.5811 -3.5940 22 6 6.8189 1.4163 -3.8404 23 6 6.1384 1.2709 -5.0307 24 6 6.1791 2.2733 -5.9833 25 6 6.9047 3.4339 -5.7485 26 8 6.9404 4.4141 -6.6893 27 6 6.2084 4.1835 -7.8946 28 6 7.5923 3.5927 -4.5580 29 1 -0.3633 0.5140 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.9565 0.7803 -0.8891 33 1 3.9558 0.7808 0.8908 34 1 3.6102 3.2366 0.8893 35 1 3.6111 3.2354 -0.8907 36 1 4.2921 5.1634 2.6492 37 1 8.1371 2.9348 -0.2309 38 1 10.0974 3.8589 -2.4238 39 1 10.1720 2.4116 -1.3903 40 1 10.1810 2.2415 -3.1621 41 1 6.7853 0.6316 -3.0991 42 1 5.5717 0.3712 -5.2201 43 1 5.6434 2.1530 -6.9134 44 1 5.1537 4.0430 -7.6581 45 1 6.3212 5.0411 -8.5580 46 1 6.5924 3.2904 -8.3877 47 1 8.1604 4.4930 -4.3762 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871342726.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:06 Heat of formation + Delta-G solvation = -119.720990 kcal Electronic energy + Delta-G solvation = -30884.768180 eV Core-core repulsion = 26612.604062 eV Total energy + Delta-G solvation = -4272.164117 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.59193 -41.07603 -40.33954 -38.54138 -37.63083 -36.72718 -35.42261 -33.81120 -32.59150 -31.57911 -30.36020 -29.14087 -28.34378 -28.02893 -26.88346 -25.24717 -23.71513 -23.15127 -21.97872 -21.22430 -20.29209 -19.21487 -18.64965 -17.91355 -17.63086 -17.51105 -17.47246 -17.04773 -16.82132 -16.56821 -16.29852 -16.03235 -15.39041 -15.24250 -14.83063 -14.75680 -14.53520 -14.36051 -14.20527 -13.84582 -13.74327 -13.64538 -13.46384 -13.24923 -13.18383 -13.01690 -12.88765 -12.73917 -12.65580 -12.51683 -12.20636 -12.11939 -11.95473 -11.87473 -11.81196 -11.63981 -11.61325 -10.98660 -10.42039 -9.96455 -9.58115 -9.36276 -8.75472 -8.28142 -6.00489 0.18191 0.65453 0.85941 1.11043 1.47528 1.52382 1.60057 1.68148 2.32114 2.44151 2.62757 2.96412 3.10062 3.17167 3.81523 3.83556 3.98052 4.09461 4.18712 4.22173 4.28939 4.29659 4.33446 4.38084 4.40789 4.48437 4.59292 4.61847 4.66055 4.67913 4.72274 4.75766 4.80661 4.89344 4.97071 5.14646 5.17021 5.25176 5.36710 5.40135 5.49454 5.52368 5.58460 5.69049 5.85010 5.96979 5.99673 6.42939 6.56841 6.68141 7.15188 7.64938 8.07790 8.73248 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.008391 B = 0.003877 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3336.288650 B = 7220.361071 C = 9535.146448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.362 6.362 3 C 0.473 3.527 4 O -0.538 6.538 5 C -0.112 4.112 6 C 0.138 3.862 7 N -0.441 5.441 8 C -0.354 4.354 9 H 0.109 0.891 10 C 0.000 4.000 11 N -0.892 5.892 12 Si 0.981 3.019 13 H -0.258 1.258 14 H -0.291 1.291 15 H -0.263 1.263 16 C 0.478 3.522 17 O -0.606 6.606 18 C -0.180 4.180 19 C -0.039 4.039 20 C -0.107 4.107 21 C 0.002 3.998 22 C -0.094 4.094 23 C -0.096 4.096 24 C -0.213 4.213 25 C 0.105 3.895 26 O -0.340 6.340 27 C 0.021 3.979 28 C -0.162 4.162 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.139 0.861 32 H 0.103 0.897 33 H 0.117 0.883 34 H 0.093 0.907 35 H 0.028 0.972 36 H 0.270 0.730 37 H 0.140 0.860 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.107 0.893 42 H 0.139 0.861 43 H 0.145 0.855 44 H 0.054 0.946 45 H 0.119 0.881 46 H 0.068 0.932 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.420 -8.830 -9.425 13.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.278 6.278 3 C 0.317 3.683 4 O -0.428 6.428 5 C -0.151 4.151 6 C 0.013 3.987 7 N -0.159 5.159 8 C -0.481 4.481 9 H 0.126 0.874 10 C -0.203 4.203 11 N -0.529 5.529 12 Si 0.804 3.196 13 H -0.182 1.182 14 H -0.217 1.217 15 H -0.188 1.188 16 C 0.271 3.729 17 O -0.494 6.494 18 C -0.200 4.200 19 C -0.041 4.041 20 C -0.163 4.163 21 C 0.001 3.999 22 C -0.112 4.112 23 C -0.114 4.114 24 C -0.231 4.231 25 C 0.060 3.940 26 O -0.255 6.255 27 C -0.074 4.074 28 C -0.181 4.181 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.157 0.843 32 H 0.121 0.879 33 H 0.135 0.865 34 H 0.111 0.889 35 H 0.047 0.953 36 H 0.080 0.920 37 H 0.158 0.842 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.098 0.902 41 H 0.126 0.874 42 H 0.156 0.844 43 H 0.163 0.837 44 H 0.073 0.927 45 H 0.138 0.862 46 H 0.087 0.913 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.842 -8.271 -9.800 13.134 hybrid contribution -0.787 0.437 0.977 1.329 sum 2.055 -7.834 -8.822 11.976 Atomic orbital electron populations 1.23582 0.74789 1.05895 1.02405 1.86507 1.25149 1.32321 1.83862 1.23857 0.92141 0.81272 0.71006 1.90641 1.67865 1.37536 1.46745 1.21649 0.86720 1.00734 1.05952 1.20851 0.82620 0.92859 1.02361 1.43498 1.04414 1.61998 1.05943 1.19789 1.06470 1.31078 0.90808 0.87366 1.26294 0.96847 0.92854 1.04348 1.70040 1.29166 1.19032 1.34657 0.85170 0.79021 0.78409 0.76957 1.18220 1.21705 1.18770 1.19009 0.89583 0.81111 0.83216 1.90728 1.71274 1.56310 1.31069 1.22969 0.93052 1.05156 0.98806 1.21343 0.97044 0.95080 0.90671 1.20880 0.87672 1.03521 1.04210 1.18625 0.95568 0.93607 0.92051 1.20918 0.96775 0.97173 0.96346 1.20949 0.98151 0.99172 0.93117 1.21369 1.04760 0.94591 1.02419 1.18874 0.96905 0.88576 0.89634 1.86004 1.70176 1.41548 1.27750 1.23287 0.95691 1.04501 0.83876 1.20425 1.04761 1.00221 0.92695 0.92124 0.92233 0.84297 0.87869 0.86524 0.88929 0.95340 0.92010 0.84212 0.89720 0.89452 0.90156 0.87440 0.84359 0.83698 0.92749 0.86238 0.91336 0.85925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.56 113.37 1.20 1.81 16 2 O -0.36 -11.54 10.56 -51.38 -0.54 -12.09 16 3 C 0.47 18.62 7.96 71.24 0.57 19.18 16 4 O -0.54 -24.54 15.73 21.99 0.35 -24.20 16 5 C -0.11 -4.56 6.10 29.85 0.18 -4.38 16 6 C 0.14 6.92 4.18 86.38 0.36 7.28 16 7 N -0.44 -22.07 2.54 -640.56 -1.63 -23.70 16 8 C -0.35 -17.26 8.53 84.15 0.72 -16.54 16 9 H 0.11 4.83 6.65 -2.91 -0.02 4.81 16 10 C 0.00 -0.01 4.93 84.98 0.42 0.41 16 11 N -0.89 -48.59 11.35 21.69 0.25 -48.34 16 12 Si 0.98 38.40 29.60 68.60 2.03 40.44 16 13 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 14 H -0.29 -11.67 7.11 99.48 0.71 -10.96 16 15 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 16 C 0.48 22.99 7.40 86.32 0.64 23.63 16 17 O -0.61 -30.78 11.86 -4.51 -0.05 -30.83 16 18 C -0.18 -7.19 8.94 23.60 0.21 -6.97 16 19 C -0.04 -1.32 5.49 -18.27 -0.10 -1.43 16 20 C -0.11 -2.56 10.02 71.24 0.71 -1.85 16 21 C 0.00 0.06 3.83 -20.16 -0.08 -0.01 16 22 C -0.09 -3.37 6.95 22.59 0.16 -3.22 16 23 C -0.10 -3.06 10.02 22.21 0.22 -2.84 16 24 C -0.21 -6.47 9.04 22.45 0.20 -6.27 16 25 C 0.10 3.53 6.68 22.46 0.15 3.68 16 26 O -0.34 -10.24 10.49 -92.53 -0.97 -11.21 16 27 C 0.02 0.40 9.81 113.37 1.11 1.52 16 28 C -0.16 -5.87 9.72 22.68 0.22 -5.65 16 29 H 0.06 1.43 8.13 -2.39 -0.02 1.41 16 30 H 0.06 1.41 8.13 -2.39 -0.02 1.39 16 31 H 0.14 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.10 4.09 8.14 -2.39 -0.02 4.07 16 33 H 0.12 4.39 8.14 -2.39 -0.02 4.37 16 34 H 0.09 5.10 5.34 -2.39 -0.01 5.09 16 35 H 0.03 1.58 7.55 -2.38 -0.02 1.56 16 36 H 0.27 14.06 8.31 -92.71 -0.77 13.29 16 37 H 0.14 5.24 6.45 -2.91 -0.02 5.22 16 38 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.09 1.81 8.08 -2.38 -0.02 1.79 16 40 H 0.08 1.69 8.11 -2.39 -0.02 1.68 16 41 H 0.11 3.88 8.05 -2.91 -0.02 3.85 16 42 H 0.14 3.62 8.06 -2.91 -0.02 3.60 16 43 H 0.15 3.43 6.28 -2.91 -0.02 3.41 16 44 H 0.05 1.04 7.66 -2.39 -0.02 1.02 16 45 H 0.12 1.67 8.14 -2.38 -0.02 1.65 16 46 H 0.07 1.09 7.66 -2.38 -0.02 1.08 16 47 H 0.12 4.23 8.06 -2.91 -0.02 4.20 16 Total: -1.00 -70.39 396.83 7.30 -63.09 By element: Atomic # 1 Polarization: 37.50 SS G_CDS: 0.98 Total: 38.48 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: 6.89 Total: 8.36 kcal Atomic # 7 Polarization: -70.66 SS G_CDS: -1.38 Total: -72.04 kcal Atomic # 8 Polarization: -77.11 SS G_CDS: -1.22 Total: -78.33 kcal Atomic # 14 Polarization: 38.40 SS G_CDS: 2.03 Total: 40.44 kcal Total: -70.39 7.30 -63.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871342726.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.630 kcal (2) G-P(sol) polarization free energy of solvation -70.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds