Wall clock time and date at job start Wed Apr 1 2020 04:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34222 * 117.00161 * 2 1 4 4 O 1.20818 * 120.00304 * 0.02562 * 3 2 1 5 5 C 1.50706 * 120.00017 * 180.02562 * 3 2 1 6 6 C 1.52998 * 109.47182 * 179.97438 * 5 3 2 7 7 C 1.52994 * 109.47403 * 300.00135 * 6 5 3 8 8 N 1.46502 * 109.47191 * 179.97438 * 6 5 3 9 9 C 1.34776 * 119.99945 * 294.88105 * 8 6 5 10 10 O 1.21591 * 120.00099 * 4.98495 * 9 8 6 11 11 C 1.47538 * 119.99722 * 184.99195 * 9 8 6 12 12 C 1.39665 * 120.19794 * 359.97438 * 11 9 8 13 13 C 1.37823 * 119.91492 * 180.02562 * 12 11 9 14 14 C 1.38571 * 120.33044 * 0.02562 * 13 12 11 15 15 C 1.38026 * 120.39828 * 0.02562 * 14 13 12 16 16 C 1.38831 * 120.07382 * 359.95169 * 15 14 13 17 17 O 1.35520 * 120.16655 * 180.02562 * 16 15 14 18 18 C 1.34816 * 116.99487 * 354.40106 * 17 16 15 19 19 H 1.07996 * 120.00295 * 5.05008 * 18 17 16 20 20 C 1.38701 * 119.99998 * 185.04950 * 18 17 16 21 21 N 1.31517 * 120.00423 * 180.02562 * 20 18 17 22 22 Si 1.86805 * 119.99943 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.46740 * 90.00132 * 22 20 18 24 24 H 1.48496 * 109.47115 * 209.99890 * 22 20 18 25 25 H 1.48499 * 109.47201 * 330.00389 * 22 20 18 26 26 C 1.53005 * 109.47010 * 60.00067 * 6 5 3 27 27 C 1.52998 * 117.49805 * 248.94381 * 26 6 5 28 28 C 1.52996 * 117.50122 * 180.28490 * 26 6 5 29 29 H 1.08999 * 109.47341 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47036 * 300.00036 * 1 2 3 31 31 H 1.09000 * 109.47015 * 60.00033 * 1 2 3 32 32 H 1.09002 * 109.46868 * 60.00034 * 5 3 2 33 33 H 1.08996 * 109.46849 * 299.99963 * 5 3 2 34 34 H 1.09002 * 109.47155 * 300.00119 * 7 6 5 35 35 H 1.09003 * 109.47511 * 60.00027 * 7 6 5 36 36 H 1.08999 * 109.47789 * 179.97438 * 7 6 5 37 37 H 0.96997 * 120.00122 * 114.88207 * 8 6 5 38 38 H 1.08003 * 120.03769 * 0.27957 * 12 11 9 39 39 H 1.08000 * 119.83498 * 180.02562 * 13 12 11 40 40 H 1.08002 * 119.80123 * 179.97438 * 14 13 12 41 41 H 1.08005 * 119.96482 * 179.97438 * 15 14 13 42 42 H 0.96997 * 120.00075 * 180.02562 * 21 20 18 43 43 H 1.09003 * 115.55040 * 34.61730 * 26 6 5 44 44 H 1.08998 * 117.50322 * 359.97438 * 27 26 6 45 45 H 1.08999 * 117.49634 * 145.02154 * 27 26 6 46 46 H 1.09007 * 117.50121 * 214.98373 * 28 26 6 47 47 H 1.09007 * 117.49623 * 0.02562 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5664 1.2747 -0.0006 6 6 4.0002 2.7419 -0.0011 7 6 3.4527 3.4353 -1.2502 8 7 5.4632 2.8186 -0.0011 9 6 6.1618 2.3638 1.0580 10 8 5.5856 1.8080 1.9732 11 6 7.6257 2.5405 1.1070 12 6 8.2919 3.1779 0.0579 13 6 9.6596 3.3394 0.1094 14 6 10.3790 2.8718 1.1975 15 6 9.7343 2.2390 2.2411 16 6 8.3570 2.0678 2.2067 17 8 7.7221 1.4472 3.2306 18 6 8.4959 0.9160 4.1984 19 1 9.5652 1.0662 4.1782 20 6 7.9187 0.1766 5.2201 21 7 8.6734 -0.3411 6.1646 22 14 6.0690 -0.0826 5.2555 23 1 5.7280 -1.3177 4.5050 24 1 5.6149 -0.2173 6.6629 25 1 5.3940 1.0811 4.6267 26 6 3.4536 3.4358 1.2482 27 6 2.3575 4.4848 1.0512 28 6 3.7752 4.9206 1.4295 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 3.9557 0.7808 -0.8909 33 1 3.9564 0.7805 0.8891 34 1 3.8421 2.9409 -2.1403 35 1 2.3642 3.3783 -1.2498 36 1 3.7614 4.4806 -1.2504 37 1 5.9291 3.1966 -0.7632 38 1 7.7353 3.5475 -0.7907 39 1 10.1733 3.8329 -0.7024 40 1 11.4506 3.0025 1.2289 41 1 10.3019 1.8768 3.0856 42 1 8.2697 -0.8585 6.8789 43 1 3.4041 2.8185 2.1452 44 1 2.0259 4.6810 0.0315 45 1 1.5870 4.5579 1.8187 46 1 3.9369 5.2802 2.4458 47 1 4.3758 5.4032 0.6584 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876314723.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:42 Heat of formation + Delta-G solvation = -78.816754 kcal Electronic energy + Delta-G solvation = -31909.825792 eV Core-core repulsion = 27639.435416 eV Total energy + Delta-G solvation = -4270.390377 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.00067 -39.87058 -38.95025 -37.35080 -36.51357 -36.23261 -34.23443 -32.45985 -31.89339 -30.09843 -29.20341 -28.82187 -27.17530 -25.34794 -24.16973 -23.08130 -22.12780 -21.43695 -21.17382 -20.34492 -18.77777 -17.93582 -17.88014 -17.57773 -16.76646 -16.60237 -16.36254 -15.67433 -15.27260 -14.78059 -14.65491 -14.39248 -14.25560 -14.08336 -13.78698 -13.63941 -13.35446 -13.32676 -12.77271 -12.68471 -12.39941 -12.35178 -12.19703 -12.17627 -12.07857 -11.61434 -11.41505 -11.28369 -11.10285 -10.91193 -10.85574 -10.80605 -10.73063 -10.38900 -10.06439 -9.98579 -9.92534 -9.56864 -8.91622 -8.90096 -8.80109 -8.39057 -7.48572 -6.47890 -4.12872 1.56709 2.18325 2.21069 2.60813 3.30561 3.36364 3.42807 3.60533 3.64500 4.20468 4.33855 4.49863 4.53270 4.70295 4.72968 4.83853 4.95243 5.02873 5.03840 5.08546 5.23048 5.31292 5.34495 5.37050 5.38330 5.43201 5.46454 5.62566 5.67223 5.84077 5.87014 5.92224 5.99134 6.03785 6.05264 6.18842 6.34640 6.36928 6.40135 6.51989 6.54781 6.79795 6.83429 7.00414 7.14314 7.47268 7.67182 7.74783 7.93996 7.96429 8.85437 8.89447 9.50884 10.57299 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.009707 B = 0.004355 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2883.882861 B = 6427.455260 C = 8233.779344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.361 6.361 3 C 0.468 3.532 4 O -0.495 6.495 5 C -0.128 4.128 6 C 0.228 3.772 7 C -0.171 4.171 8 N -0.732 5.732 9 C 0.566 3.434 10 O -0.512 6.512 11 C -0.226 4.226 12 C -0.041 4.041 13 C -0.221 4.221 14 C -0.051 4.051 15 C -0.228 4.228 16 C 0.202 3.798 17 O -0.165 6.165 18 C -0.396 4.396 19 H 0.108 0.892 20 C 0.072 3.928 21 N -0.870 5.870 22 Si 0.899 3.101 23 H -0.274 1.274 24 H -0.288 1.288 25 H -0.238 1.238 26 C -0.146 4.146 27 C -0.153 4.153 28 C -0.177 4.177 29 H 0.098 0.902 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.104 0.896 33 H 0.128 0.872 34 H 0.056 0.944 35 H 0.099 0.901 36 H 0.064 0.936 37 H 0.396 0.604 38 H 0.113 0.887 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.138 0.862 42 H 0.281 0.719 43 H 0.109 0.891 44 H 0.099 0.901 45 H 0.084 0.916 46 H 0.088 0.912 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.622 6.044 -16.171 20.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.278 6.278 3 C 0.311 3.689 4 O -0.383 6.383 5 C -0.167 4.167 6 C 0.142 3.858 7 C -0.228 4.228 8 N -0.386 5.386 9 C 0.357 3.643 10 O -0.388 6.388 11 C -0.231 4.231 12 C -0.059 4.059 13 C -0.240 4.240 14 C -0.070 4.070 15 C -0.247 4.247 16 C 0.144 3.856 17 O -0.065 6.065 18 C -0.471 4.471 19 H 0.125 0.875 20 C -0.133 4.133 21 N -0.505 5.505 22 Si 0.724 3.276 23 H -0.199 1.199 24 H -0.214 1.214 25 H -0.160 1.160 26 C -0.165 4.165 27 C -0.190 4.190 28 C -0.214 4.214 29 H 0.116 0.884 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.122 0.878 33 H 0.145 0.855 34 H 0.075 0.925 35 H 0.117 0.883 36 H 0.083 0.917 37 H 0.231 0.769 38 H 0.131 0.869 39 H 0.129 0.871 40 H 0.131 0.869 41 H 0.155 0.845 42 H 0.092 0.908 43 H 0.127 0.873 44 H 0.117 0.883 45 H 0.102 0.898 46 H 0.107 0.893 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.512 5.750 -15.181 19.901 hybrid contribution -0.286 -0.073 -0.090 0.308 sum -11.798 5.677 -15.271 20.115 Atomic orbital electron populations 1.23216 0.76670 1.03463 1.02374 1.86538 1.23184 1.33846 1.84249 1.23624 0.92003 0.81219 0.72104 1.90601 1.67205 1.35566 1.44908 1.21907 0.87617 0.99844 1.07308 1.19229 0.80115 0.91582 0.94900 1.22462 1.04344 1.00645 0.95356 1.46041 1.05242 1.66213 1.21145 1.18152 0.86860 0.77826 0.81471 1.90805 1.70674 1.40948 1.36367 1.18862 0.92254 1.14522 0.97440 1.20760 0.94426 0.95231 0.95519 1.20535 0.93934 1.09187 1.00394 1.20963 0.98940 0.94280 0.92777 1.21290 0.94238 1.07294 1.01847 1.19018 0.90249 0.89892 0.86422 1.83776 1.35197 1.60000 1.27483 1.20918 0.92703 1.31526 1.01962 0.87497 1.24485 1.00643 0.94257 0.93952 1.69636 1.36652 1.32241 1.12021 0.86215 0.83418 0.81215 0.76761 1.19921 1.21377 1.16030 1.22422 1.03226 0.91791 0.99050 1.22938 0.91188 1.02440 1.02452 1.22894 0.99087 0.97148 1.02255 0.88389 0.91919 0.92065 0.87789 0.85451 0.92460 0.88293 0.91695 0.76901 0.86887 0.87074 0.86896 0.84485 0.90847 0.87338 0.88278 0.89770 0.89344 0.89246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.56 101.05 1.07 1.40 16 2 O -0.36 -4.54 10.56 -39.24 -0.41 -4.95 16 3 C 0.47 6.20 7.39 36.01 0.27 6.46 16 4 O -0.50 -6.77 10.79 -18.74 -0.20 -6.97 16 5 C -0.13 -1.74 4.86 -27.88 -0.14 -1.87 16 6 C 0.23 2.99 0.62 -131.82 -0.08 2.91 16 7 C -0.17 -1.74 6.92 37.15 0.26 -1.48 16 8 N -0.73 -10.10 4.93 -48.64 -0.24 -10.34 16 9 C 0.57 10.67 7.17 -12.47 -0.09 10.58 16 10 O -0.51 -11.69 12.02 -16.57 -0.20 -11.89 16 11 C -0.23 -4.38 5.89 -104.81 -0.62 -5.00 16 12 C -0.04 -0.62 9.53 -39.20 -0.37 -0.99 16 13 C -0.22 -3.33 10.02 -39.61 -0.40 -3.73 16 14 C -0.05 -0.86 10.03 -39.54 -0.40 -1.25 16 15 C -0.23 -4.72 9.16 -39.44 -0.36 -5.08 16 16 C 0.20 4.64 6.66 -38.60 -0.26 4.38 16 17 O -0.16 -4.41 6.67 -21.06 -0.14 -4.55 16 18 C -0.40 -11.18 9.95 30.90 0.31 -10.87 16 19 H 0.11 3.02 5.44 -52.49 -0.29 2.73 16 20 C 0.07 2.05 5.49 -17.52 -0.10 1.96 16 21 N -0.87 -25.15 13.96 55.48 0.77 -24.37 16 22 Si 0.90 22.94 28.62 -169.99 -4.86 18.07 16 23 H -0.27 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.24 -6.34 7.11 56.52 0.40 -5.93 16 26 C -0.15 -2.20 3.02 -90.62 -0.27 -2.47 16 27 C -0.15 -1.98 7.88 -26.70 -0.21 -2.19 16 28 C -0.18 -2.43 9.78 -26.70 -0.26 -2.70 16 29 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 31 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 32 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.13 2.12 6.38 -51.93 -0.33 1.79 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.10 1.09 4.50 -51.93 -0.23 0.86 16 36 H 0.06 0.61 7.07 -51.93 -0.37 0.24 16 37 H 0.40 4.29 6.53 -40.82 -0.27 4.03 16 38 H 0.11 1.28 6.42 -52.48 -0.34 0.94 16 39 H 0.11 1.34 8.06 -52.49 -0.42 0.91 16 40 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 41 H 0.14 2.97 5.64 -52.48 -0.30 2.67 16 42 H 0.28 7.55 8.31 -40.82 -0.34 7.21 16 43 H 0.11 2.01 7.41 -51.93 -0.38 1.63 16 44 H 0.10 1.17 5.77 -51.93 -0.30 0.87 16 45 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 47 H 0.09 1.12 7.59 -51.93 -0.39 0.73 16 LS Contribution 377.93 15.07 5.70 5.70 Total: -1.00 -32.43 377.93 -7.38 -39.81 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -6.13 Total: 9.44 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: -1.65 Total: -9.95 kcal Atomic # 7 Polarization: -35.25 SS G_CDS: 0.53 Total: -34.71 kcal Atomic # 8 Polarization: -27.41 SS G_CDS: -0.96 Total: -28.36 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -4.86 Total: 18.07 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.43 -7.38 -39.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876314723.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.007 kcal (2) G-P(sol) polarization free energy of solvation -32.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds