Wall clock time and date at job start Wed Apr 1 2020 04:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34222 * 117.00161 * 2 1 4 4 O 1.20818 * 120.00304 * 0.02562 * 3 2 1 5 5 C 1.50706 * 120.00017 * 180.02562 * 3 2 1 6 6 C 1.52998 * 109.47182 * 179.97438 * 5 3 2 7 7 C 1.52994 * 109.47403 * 300.00135 * 6 5 3 8 8 N 1.46502 * 109.47191 * 179.97438 * 6 5 3 9 9 C 1.34776 * 119.99945 * 294.88105 * 8 6 5 10 10 O 1.21591 * 120.00099 * 4.98495 * 9 8 6 11 11 C 1.47538 * 119.99722 * 184.99195 * 9 8 6 12 12 C 1.39665 * 120.19794 * 359.97438 * 11 9 8 13 13 C 1.37823 * 119.91492 * 180.02562 * 12 11 9 14 14 C 1.38571 * 120.33044 * 0.02562 * 13 12 11 15 15 C 1.38026 * 120.39828 * 0.02562 * 14 13 12 16 16 C 1.38831 * 120.07382 * 359.95169 * 15 14 13 17 17 O 1.35520 * 120.16655 * 180.02562 * 16 15 14 18 18 C 1.34816 * 116.99487 * 354.40106 * 17 16 15 19 19 H 1.07996 * 120.00295 * 5.05008 * 18 17 16 20 20 C 1.38701 * 119.99998 * 185.04950 * 18 17 16 21 21 N 1.31517 * 120.00423 * 180.02562 * 20 18 17 22 22 Si 1.86805 * 119.99943 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.46740 * 90.00132 * 22 20 18 24 24 H 1.48496 * 109.47115 * 209.99890 * 22 20 18 25 25 H 1.48499 * 109.47201 * 330.00389 * 22 20 18 26 26 C 1.53005 * 109.47010 * 60.00067 * 6 5 3 27 27 C 1.52998 * 117.49805 * 248.94381 * 26 6 5 28 28 C 1.52996 * 117.50122 * 180.28490 * 26 6 5 29 29 H 1.08999 * 109.47341 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47036 * 300.00036 * 1 2 3 31 31 H 1.09000 * 109.47015 * 60.00033 * 1 2 3 32 32 H 1.09002 * 109.46868 * 60.00034 * 5 3 2 33 33 H 1.08996 * 109.46849 * 299.99963 * 5 3 2 34 34 H 1.09002 * 109.47155 * 300.00119 * 7 6 5 35 35 H 1.09003 * 109.47511 * 60.00027 * 7 6 5 36 36 H 1.08999 * 109.47789 * 179.97438 * 7 6 5 37 37 H 0.96997 * 120.00122 * 114.88207 * 8 6 5 38 38 H 1.08003 * 120.03769 * 0.27957 * 12 11 9 39 39 H 1.08000 * 119.83498 * 180.02562 * 13 12 11 40 40 H 1.08002 * 119.80123 * 179.97438 * 14 13 12 41 41 H 1.08005 * 119.96482 * 179.97438 * 15 14 13 42 42 H 0.96997 * 120.00075 * 180.02562 * 21 20 18 43 43 H 1.09003 * 115.55040 * 34.61730 * 26 6 5 44 44 H 1.08998 * 117.50322 * 359.97438 * 27 26 6 45 45 H 1.08999 * 117.49634 * 145.02154 * 27 26 6 46 46 H 1.09007 * 117.50121 * 214.98373 * 28 26 6 47 47 H 1.09007 * 117.49623 * 0.02562 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5664 1.2747 -0.0006 6 6 4.0002 2.7419 -0.0011 7 6 3.4527 3.4353 -1.2502 8 7 5.4632 2.8186 -0.0011 9 6 6.1618 2.3638 1.0580 10 8 5.5856 1.8080 1.9732 11 6 7.6257 2.5405 1.1070 12 6 8.2919 3.1779 0.0579 13 6 9.6596 3.3394 0.1094 14 6 10.3790 2.8718 1.1975 15 6 9.7343 2.2390 2.2411 16 6 8.3570 2.0678 2.2067 17 8 7.7221 1.4472 3.2306 18 6 8.4959 0.9160 4.1984 19 1 9.5652 1.0662 4.1782 20 6 7.9187 0.1766 5.2201 21 7 8.6734 -0.3411 6.1646 22 14 6.0690 -0.0826 5.2555 23 1 5.7280 -1.3177 4.5050 24 1 5.6149 -0.2173 6.6629 25 1 5.3940 1.0811 4.6267 26 6 3.4536 3.4358 1.2482 27 6 2.3575 4.4848 1.0512 28 6 3.7752 4.9206 1.4295 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 3.9557 0.7808 -0.8909 33 1 3.9564 0.7805 0.8891 34 1 3.8421 2.9409 -2.1403 35 1 2.3642 3.3783 -1.2498 36 1 3.7614 4.4806 -1.2504 37 1 5.9291 3.1966 -0.7632 38 1 7.7353 3.5475 -0.7907 39 1 10.1733 3.8329 -0.7024 40 1 11.4506 3.0025 1.2289 41 1 10.3019 1.8768 3.0856 42 1 8.2697 -0.8585 6.8789 43 1 3.4041 2.8185 2.1452 44 1 2.0259 4.6810 0.0315 45 1 1.5870 4.5579 1.8187 46 1 3.9369 5.2802 2.4458 47 1 4.3758 5.4032 0.6584 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876314723.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:41 Heat of formation + Delta-G solvation = -98.979649 kcal Electronic energy + Delta-G solvation = -31910.700121 eV Core-core repulsion = 27639.435416 eV Total energy + Delta-G solvation = -4271.264705 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.10139 -41.25042 -40.32767 -38.72575 -38.05992 -37.26401 -35.47423 -34.50867 -33.18024 -31.42545 -30.75555 -29.72769 -27.98826 -27.29117 -25.37114 -24.39878 -23.25816 -22.94683 -22.23753 -21.73431 -20.05781 -19.69910 -19.41500 -18.66607 -17.98111 -17.75806 -17.51297 -16.93506 -16.53695 -16.25740 -16.06928 -15.95533 -15.59996 -15.48347 -15.38917 -15.09690 -14.64657 -14.32225 -14.26117 -14.05848 -14.00923 -13.71158 -13.43264 -13.11882 -13.03922 -12.93463 -12.80565 -12.59096 -12.52151 -12.38074 -12.10315 -12.06424 -11.95212 -11.77111 -11.49380 -11.40066 -11.10270 -11.04921 -10.96785 -10.37166 -10.11593 -9.80418 -9.11267 -8.57781 -6.25662 0.10578 0.68681 1.18073 1.23101 1.28052 1.56480 1.65772 2.07734 2.27816 2.33552 2.77533 3.05478 3.07699 3.20484 3.47394 3.68876 3.84229 4.00791 4.05442 4.07141 4.14622 4.25926 4.29105 4.30704 4.33083 4.39118 4.51231 4.55776 4.62394 4.68656 4.70878 4.77968 4.84697 4.91282 4.97275 5.09867 5.10366 5.19610 5.26860 5.31474 5.38012 5.46780 5.51017 5.64043 5.65177 5.72597 5.85271 6.18854 6.73745 6.75649 6.80951 7.50510 7.61259 8.52913 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.009707 B = 0.004355 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2883.882861 B = 6427.455260 C = 8233.779344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.375 6.375 3 C 0.469 3.531 4 O -0.501 6.501 5 C -0.129 4.129 6 C 0.230 3.770 7 C -0.162 4.162 8 N -0.705 5.705 9 C 0.562 3.438 10 O -0.559 6.559 11 C -0.230 4.230 12 C -0.029 4.029 13 C -0.190 4.190 14 C -0.045 4.045 15 C -0.253 4.253 16 C 0.162 3.838 17 O -0.208 6.208 18 C -0.400 4.400 19 H 0.091 0.909 20 C 0.027 3.973 21 N -0.913 5.913 22 Si 0.954 3.046 23 H -0.275 1.275 24 H -0.271 1.271 25 H -0.265 1.265 26 C -0.166 4.166 27 C -0.131 4.131 28 C -0.176 4.176 29 H 0.124 0.876 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.127 0.873 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.415 0.585 38 H 0.168 0.832 39 H 0.165 0.835 40 H 0.147 0.853 41 H 0.112 0.888 42 H 0.285 0.715 43 H 0.059 0.941 44 H 0.121 0.879 45 H 0.077 0.923 46 H 0.071 0.929 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.962 8.509 -21.513 25.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.292 6.292 3 C 0.312 3.688 4 O -0.389 6.389 5 C -0.168 4.168 6 C 0.144 3.856 7 C -0.219 4.219 8 N -0.361 5.361 9 C 0.352 3.648 10 O -0.437 6.437 11 C -0.235 4.235 12 C -0.048 4.048 13 C -0.208 4.208 14 C -0.063 4.063 15 C -0.273 4.273 16 C 0.109 3.891 17 O -0.112 6.112 18 C -0.476 4.476 19 H 0.108 0.892 20 C -0.173 4.173 21 N -0.553 5.553 22 Si 0.778 3.222 23 H -0.201 1.201 24 H -0.196 1.196 25 H -0.189 1.189 26 C -0.186 4.186 27 C -0.168 4.168 28 C -0.213 4.213 29 H 0.142 0.858 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.145 0.855 33 H 0.107 0.893 34 H 0.102 0.898 35 H 0.112 0.888 36 H 0.100 0.900 37 H 0.254 0.746 38 H 0.186 0.814 39 H 0.183 0.817 40 H 0.165 0.835 41 H 0.130 0.870 42 H 0.094 0.906 43 H 0.078 0.922 44 H 0.139 0.861 45 H 0.096 0.904 46 H 0.089 0.911 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -11.847 8.254 -20.604 25.160 hybrid contribution -0.109 -0.608 1.169 1.322 sum -11.956 7.646 -19.436 24.065 Atomic orbital electron populations 1.23510 0.74698 1.05381 1.02708 1.86516 1.25194 1.33464 1.84001 1.23479 0.91850 0.81415 0.72015 1.90579 1.67324 1.35721 1.45298 1.21860 0.88226 1.00210 1.06520 1.19348 0.79230 0.91459 0.95608 1.22408 1.03897 1.01442 0.94140 1.45768 1.05666 1.64495 1.20124 1.18269 0.86932 0.77627 0.82008 1.90819 1.71451 1.42947 1.38499 1.19340 0.92932 1.13855 0.97340 1.21375 0.95120 0.92993 0.95264 1.21225 0.93782 1.05702 1.00098 1.21420 1.00888 0.92315 0.91696 1.21322 0.93626 1.09281 1.03036 1.19770 0.91816 0.90450 0.87075 1.83768 1.35227 1.63276 1.28911 1.20874 0.92303 1.31630 1.02784 0.89207 1.24999 1.03191 0.94889 0.94236 1.69682 1.37515 1.34815 1.13302 0.85427 0.80155 0.79611 0.76959 1.20062 1.19613 1.18934 1.22314 1.05732 0.92047 0.98477 1.22952 0.90438 1.00127 1.03322 1.22948 1.00173 0.96025 1.02122 0.85817 0.92494 0.90795 0.85481 0.89298 0.89809 0.88769 0.90000 0.74565 0.81435 0.81712 0.83483 0.87047 0.90566 0.92214 0.86127 0.90449 0.91053 0.87011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.56 113.37 1.20 1.70 16 2 O -0.37 -9.19 10.56 -51.34 -0.54 -9.73 16 3 C 0.47 12.14 7.39 71.24 0.53 12.67 16 4 O -0.50 -13.07 10.79 21.99 0.24 -12.83 16 5 C -0.13 -3.45 4.86 29.85 0.15 -3.30 16 6 C 0.23 5.58 0.62 3.60 0.00 5.59 16 7 C -0.16 -2.57 6.92 71.98 0.50 -2.07 16 8 N -0.71 -17.51 4.93 -426.05 -2.10 -19.61 16 9 C 0.56 20.97 7.17 86.70 0.62 21.59 16 10 O -0.56 -26.92 12.02 16.89 0.20 -26.72 16 11 C -0.23 -8.62 5.89 -19.98 -0.12 -8.73 16 12 C -0.03 -0.74 9.53 22.52 0.21 -0.52 16 13 C -0.19 -4.49 10.02 22.25 0.22 -4.27 16 14 C -0.05 -1.36 10.03 22.30 0.22 -1.13 16 15 C -0.25 -10.70 9.16 22.36 0.20 -10.49 16 16 C 0.16 7.68 6.66 22.91 0.15 7.83 16 17 O -0.21 -11.94 6.67 0.82 0.01 -11.94 16 18 C -0.40 -24.41 9.95 67.93 0.68 -23.73 16 19 H 0.09 5.57 5.44 -2.91 -0.02 5.55 16 20 C 0.03 1.64 5.49 84.85 0.47 2.11 16 21 N -0.91 -56.28 13.96 21.62 0.30 -55.98 16 22 Si 0.95 51.29 28.62 68.60 1.96 53.26 16 23 H -0.28 -14.53 7.11 99.48 0.71 -13.82 16 24 H -0.27 -13.51 7.11 99.48 0.71 -12.81 16 25 H -0.26 -15.26 7.11 99.48 0.71 -14.55 16 26 C -0.17 -5.02 3.02 -10.79 -0.03 -5.05 16 27 C -0.13 -3.21 7.88 30.62 0.24 -2.97 16 28 C -0.18 -4.63 9.78 30.62 0.30 -4.33 16 29 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.06 1.01 8.13 -2.39 -0.02 0.99 16 31 H 0.07 1.05 8.13 -2.39 -0.02 1.03 16 32 H 0.13 2.66 8.14 -2.39 -0.02 2.64 16 33 H 0.09 3.15 6.38 -2.39 -0.02 3.13 16 34 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.09 1.69 4.50 -2.39 -0.01 1.68 16 36 H 0.08 1.06 7.07 -2.39 -0.02 1.04 16 37 H 0.42 6.72 6.53 -92.71 -0.61 6.11 16 38 H 0.17 2.41 6.42 -2.91 -0.02 2.39 16 39 H 0.17 2.39 8.06 -2.91 -0.02 2.37 16 40 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 41 H 0.11 5.21 5.64 -2.91 -0.02 5.19 16 42 H 0.28 16.21 8.31 -92.71 -0.77 15.44 16 43 H 0.06 2.40 7.41 -2.39 -0.02 2.38 16 44 H 0.12 2.45 5.77 -2.39 -0.01 2.44 16 45 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 46 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 47 H 0.11 2.41 7.59 -2.38 -0.02 2.39 16 Total: -1.00 -81.34 377.93 6.03 -75.32 By element: Atomic # 1 Polarization: 22.94 SS G_CDS: 0.42 Total: 23.36 kcal Atomic # 6 Polarization: -20.66 SS G_CDS: 5.54 Total: -15.12 kcal Atomic # 7 Polarization: -73.80 SS G_CDS: -1.80 Total: -75.60 kcal Atomic # 8 Polarization: -61.12 SS G_CDS: -0.10 Total: -61.21 kcal Atomic # 14 Polarization: 51.29 SS G_CDS: 1.96 Total: 53.26 kcal Total: -81.34 6.03 -75.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876314723.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.664 kcal (2) G-P(sol) polarization free energy of solvation -81.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds