Wall clock time and date at job start Wed Apr 1 2020 04:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34228 * 117.00122 * 2 1 4 4 O 1.20825 * 120.00310 * 0.02562 * 3 2 1 5 5 C 1.50705 * 120.00088 * 180.27588 * 3 2 1 6 6 C 1.52999 * 109.47138 * 179.72750 * 5 3 2 7 7 C 1.53001 * 109.47159 * 59.99781 * 6 5 3 8 8 N 1.46501 * 109.46777 * 179.97438 * 6 5 3 9 9 C 1.34769 * 120.00087 * 298.71806 * 8 6 5 10 10 O 1.21599 * 120.00204 * 3.58461 * 9 8 6 11 11 C 1.47534 * 120.00389 * 183.59093 * 9 8 6 12 12 C 1.39664 * 120.19413 * 359.97438 * 11 9 8 13 13 C 1.37831 * 119.92149 * 179.97438 * 12 11 9 14 14 C 1.38570 * 120.32303 * 0.02562 * 13 12 11 15 15 C 1.38028 * 120.40053 * 359.97438 * 14 13 12 16 16 C 1.38839 * 120.07168 * 359.74431 * 15 14 13 17 17 O 1.35518 * 120.16021 * 180.27539 * 16 15 14 18 18 C 1.34814 * 117.00235 * 353.56022 * 17 16 15 19 19 H 1.08006 * 119.99863 * 5.20944 * 18 17 16 20 20 C 1.38694 * 120.00055 * 185.21385 * 18 17 16 21 21 N 1.31517 * 120.00358 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00084 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46852 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47290 * 119.99310 * 22 20 18 25 25 H 1.48495 * 109.46958 * 239.99681 * 22 20 18 26 26 C 1.53002 * 109.46880 * 299.99979 * 6 5 3 27 27 C 1.52999 * 117.49539 * 254.80858 * 26 6 5 28 28 C 1.53001 * 60.00090 * 252.51170 * 27 26 6 29 29 H 1.09004 * 109.46960 * 59.99693 * 1 2 3 30 30 H 1.09002 * 109.47553 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47137 * 299.99751 * 1 2 3 32 32 H 1.08999 * 109.46645 * 299.72368 * 5 3 2 33 33 H 1.08998 * 109.46737 * 59.72387 * 5 3 2 34 34 H 1.09003 * 109.46978 * 60.00396 * 7 6 5 35 35 H 1.09002 * 109.46827 * 179.97438 * 7 6 5 36 36 H 1.08989 * 109.47121 * 300.00005 * 7 6 5 37 37 H 0.96999 * 119.99547 * 118.72010 * 8 6 5 38 38 H 1.08004 * 120.04477 * 0.02562 * 12 11 9 39 39 H 1.07998 * 119.83835 * 180.02562 * 13 12 11 40 40 H 1.07998 * 119.80263 * 179.97438 * 14 13 12 41 41 H 1.07998 * 119.96266 * 180.02562 * 15 14 13 42 42 H 0.96996 * 120.00645 * 180.02562 * 21 20 18 43 43 H 1.08997 * 115.55244 * 40.51464 * 26 6 5 44 44 H 1.09002 * 117.50051 * 359.97438 * 27 26 6 45 45 H 1.09000 * 117.50232 * 145.01996 * 27 26 6 46 46 H 1.08998 * 117.49810 * 252.51240 * 28 27 26 47 47 H 1.08998 * 117.50145 * 107.48875 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0063 6 6 4.0001 2.7420 -0.0118 7 6 3.4581 3.4388 1.2378 8 7 5.4631 2.8186 -0.0173 9 6 6.1691 2.2966 1.0051 10 8 5.5964 1.7048 1.8998 11 6 7.6367 2.4431 1.0391 12 6 8.2988 3.1217 0.0134 13 6 9.6700 3.2557 0.0511 14 6 10.3968 2.7198 1.1021 15 6 9.7562 2.0466 2.1227 16 6 8.3749 1.9069 2.1044 17 8 7.7436 1.2512 3.1084 18 6 8.5212 0.6426 4.0261 19 1 9.5941 0.7613 3.9890 20 6 7.9436 -0.1361 5.0179 21 7 6.6371 -0.2804 5.0634 22 14 9.0211 -0.9789 6.2900 23 1 10.4463 -0.6598 6.0211 24 1 8.6533 -0.4991 7.6463 25 1 8.8203 -2.4483 6.2134 26 6 3.4480 3.4324 -1.2606 27 6 4.4305 3.7328 -2.3944 28 6 3.8922 4.8721 -1.5266 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.9596 0.7831 0.8834 33 1 3.9524 0.7784 -0.8965 34 1 3.8515 2.9470 2.1275 35 1 3.7676 4.4840 1.2341 36 1 2.3697 3.3818 1.2423 37 1 5.9236 3.2451 -0.7568 38 1 7.7369 3.5416 -0.8078 39 1 10.1806 3.7810 -0.7425 40 1 11.4710 2.8294 1.1229 41 1 10.3295 1.6321 2.9387 42 1 6.2331 -0.8247 5.7571 43 1 2.4289 3.1610 -1.5361 44 1 5.4703 3.4390 -2.2504 45 1 4.0579 3.6590 -3.4160 46 1 3.1654 5.5479 -1.9774 47 1 4.5776 5.3275 -0.8119 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876314724.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:44 Heat of formation + Delta-G solvation = -95.880256 kcal Electronic energy + Delta-G solvation = -31613.673308 eV Core-core repulsion = 27342.543002 eV Total energy + Delta-G solvation = -4271.130306 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.19251 -41.22920 -40.31737 -38.67879 -37.99076 -37.47894 -35.04744 -34.29615 -33.44043 -31.42262 -30.54051 -29.84985 -27.97804 -27.35825 -25.36842 -24.34733 -23.17450 -23.11712 -22.31259 -21.72271 -20.35334 -19.74996 -19.40704 -18.70551 -18.05030 -17.59631 -17.27562 -16.74623 -16.40304 -16.27277 -16.10133 -15.82947 -15.67322 -15.29403 -15.14984 -15.10790 -14.66235 -14.50960 -14.24848 -14.18874 -14.09205 -13.60623 -13.53206 -13.04950 -12.96930 -12.80523 -12.65839 -12.55614 -12.41987 -12.33907 -12.27613 -12.15959 -12.08669 -11.75564 -11.49506 -11.31467 -11.14792 -11.04753 -10.82301 -10.36607 -10.08519 -9.78572 -9.01300 -8.42665 -6.12866 0.14555 0.74758 1.08297 1.33389 1.43350 1.52426 1.61531 2.11651 2.16547 2.33211 2.85722 2.91109 3.24897 3.45933 3.49087 3.59734 3.89681 3.93540 3.97539 4.08506 4.10737 4.22194 4.26924 4.30568 4.31510 4.45494 4.55248 4.58730 4.64742 4.67015 4.71087 4.73642 4.83057 4.89330 4.99902 5.09270 5.09587 5.14928 5.18248 5.26415 5.27820 5.41973 5.51051 5.62862 5.66189 5.71820 5.98122 6.18558 6.66655 6.70872 6.97226 7.51720 7.82659 8.77473 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.009732 B = 0.003894 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2876.538960 B = 7188.806678 C = 9590.005810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.371 6.371 3 C 0.476 3.524 4 O -0.512 6.512 5 C -0.129 4.129 6 C 0.233 3.767 7 C -0.164 4.164 8 N -0.713 5.713 9 C 0.552 3.448 10 O -0.549 6.549 11 C -0.244 4.244 12 C -0.032 4.032 13 C -0.200 4.200 14 C -0.041 4.041 15 C -0.258 4.258 16 C 0.152 3.848 17 O -0.185 6.185 18 C -0.425 4.425 19 H 0.105 0.895 20 C -0.020 4.020 21 N -0.902 5.902 22 Si 1.018 2.982 23 H -0.246 1.246 24 H -0.270 1.270 25 H -0.269 1.269 26 C -0.168 4.168 27 C -0.168 4.168 28 C -0.167 4.167 29 H 0.073 0.927 30 H 0.127 0.873 31 H 0.058 0.942 32 H 0.094 0.906 33 H 0.122 0.878 34 H 0.034 0.966 35 H 0.061 0.939 36 H 0.082 0.918 37 H 0.410 0.590 38 H 0.156 0.844 39 H 0.163 0.837 40 H 0.152 0.848 41 H 0.122 0.878 42 H 0.269 0.731 43 H 0.122 0.878 44 H 0.102 0.898 45 H 0.119 0.881 46 H 0.110 0.890 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.344 6.854 -17.479 19.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.287 6.287 3 C 0.320 3.680 4 O -0.402 6.402 5 C -0.167 4.167 6 C 0.147 3.853 7 C -0.222 4.222 8 N -0.372 5.372 9 C 0.342 3.658 10 O -0.427 6.427 11 C -0.248 4.248 12 C -0.050 4.050 13 C -0.218 4.218 14 C -0.059 4.059 15 C -0.278 4.278 16 C 0.097 3.903 17 O -0.088 6.088 18 C -0.501 4.501 19 H 0.122 0.878 20 C -0.219 4.219 21 N -0.538 5.538 22 Si 0.837 3.163 23 H -0.169 1.169 24 H -0.196 1.196 25 H -0.195 1.195 26 C -0.186 4.186 27 C -0.205 4.205 28 C -0.204 4.204 29 H 0.092 0.908 30 H 0.146 0.854 31 H 0.077 0.923 32 H 0.112 0.888 33 H 0.140 0.860 34 H 0.054 0.946 35 H 0.080 0.920 36 H 0.101 0.899 37 H 0.252 0.748 38 H 0.174 0.826 39 H 0.181 0.819 40 H 0.170 0.830 41 H 0.139 0.861 42 H 0.078 0.922 43 H 0.140 0.860 44 H 0.120 0.880 45 H 0.137 0.863 46 H 0.129 0.871 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.399 6.589 -16.650 18.439 hybrid contribution 0.151 -0.497 1.067 1.187 sum -4.248 6.092 -15.583 17.262 Atomic orbital electron populations 1.23570 0.74483 1.05653 1.02799 1.86528 1.25405 1.33086 1.83721 1.23466 0.91764 0.81373 0.71424 1.90549 1.67519 1.35994 1.46136 1.21813 0.88158 1.00210 1.06546 1.19195 0.79248 0.91373 0.95529 1.22302 1.02581 1.00244 0.97045 1.46030 1.05715 1.61463 1.23963 1.18459 0.87463 0.78213 0.81648 1.90892 1.71625 1.41828 1.38311 1.19305 0.92469 1.13928 0.99137 1.21275 0.95453 0.93389 0.94913 1.21158 0.93345 1.06240 1.01093 1.21418 1.00920 0.92009 0.91576 1.21306 0.93142 1.09486 1.03825 1.20037 0.92227 0.90399 0.87654 1.84168 1.35241 1.58122 1.31264 1.22027 0.91681 1.29069 1.07344 0.87771 1.26664 0.97777 0.97177 1.00275 1.70312 1.11744 1.37878 1.33860 0.84549 0.77967 0.77566 0.76183 1.16947 1.19552 1.19452 1.22525 1.00651 1.00268 0.95160 1.23175 0.98869 1.02057 0.96405 1.23024 1.03826 0.90684 1.02830 0.90785 0.85436 0.92314 0.88780 0.85996 0.94646 0.91963 0.89947 0.74819 0.82622 0.81937 0.83036 0.86070 0.92156 0.86034 0.87996 0.86280 0.87129 0.88955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.56 113.37 1.20 1.74 16 2 O -0.37 -10.51 10.56 -51.40 -0.54 -11.06 16 3 C 0.48 14.57 7.26 71.24 0.52 15.08 16 4 O -0.51 -15.97 11.37 21.97 0.25 -15.72 16 5 C -0.13 -4.17 4.83 29.85 0.14 -4.03 16 6 C 0.23 7.02 0.60 3.60 0.00 7.02 16 7 C -0.16 -5.82 7.98 71.98 0.57 -5.25 16 8 N -0.71 -21.94 4.80 -426.04 -2.04 -23.98 16 9 C 0.55 23.84 7.18 86.70 0.62 24.46 16 10 O -0.55 -30.26 11.38 16.87 0.19 -30.07 16 11 C -0.24 -10.23 5.89 -19.99 -0.12 -10.35 16 12 C -0.03 -0.93 9.53 22.52 0.21 -0.72 16 13 C -0.20 -5.18 10.02 22.25 0.22 -4.96 16 14 C -0.04 -1.25 10.03 22.30 0.22 -1.03 16 15 C -0.26 -10.86 9.16 22.36 0.20 -10.66 16 16 C 0.15 7.65 6.66 22.91 0.15 7.80 16 17 O -0.19 -11.55 7.84 0.87 0.01 -11.54 16 18 C -0.43 -25.41 9.49 67.93 0.64 -24.76 16 19 H 0.11 5.62 5.21 -2.91 -0.02 5.60 16 20 C -0.02 -1.15 5.49 84.85 0.47 -0.68 16 21 N -0.90 -58.34 13.67 21.62 0.30 -58.04 16 22 Si 1.02 44.08 29.55 68.60 2.03 46.10 16 23 H -0.25 -9.66 7.11 99.48 0.71 -8.95 16 24 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 25 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 26 C -0.17 -3.75 4.49 -10.79 -0.05 -3.80 16 27 C -0.17 -2.61 9.73 30.59 0.30 -2.31 16 28 C -0.17 -2.96 9.59 30.60 0.29 -2.67 16 29 H 0.07 1.25 8.13 -2.38 -0.02 1.23 16 30 H 0.13 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.06 1.20 8.13 -2.39 -0.02 1.18 16 32 H 0.09 3.95 6.14 -2.39 -0.01 3.94 16 33 H 0.12 3.35 8.14 -2.39 -0.02 3.33 16 34 H 0.03 1.57 6.19 -2.39 -0.01 1.56 16 35 H 0.06 2.02 7.73 -2.39 -0.02 2.00 16 36 H 0.08 2.88 5.52 -2.39 -0.01 2.87 16 37 H 0.41 9.43 3.59 -92.71 -0.33 9.09 16 38 H 0.16 3.04 6.41 -2.91 -0.02 3.02 16 39 H 0.16 2.70 8.06 -2.91 -0.02 2.68 16 40 H 0.15 3.41 8.06 -2.91 -0.02 3.38 16 41 H 0.12 5.21 5.65 -2.91 -0.02 5.20 16 42 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16 43 H 0.12 2.89 6.01 -2.39 -0.01 2.88 16 44 H 0.10 1.43 5.86 -2.39 -0.01 1.42 16 45 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 47 H 0.09 1.75 8.01 -2.39 -0.02 1.73 16 Total: -1.00 -84.93 378.55 6.49 -78.44 By element: Atomic # 1 Polarization: 40.28 SS G_CDS: 0.69 Total: 40.97 kcal Atomic # 6 Polarization: -20.72 SS G_CDS: 5.61 Total: -15.11 kcal Atomic # 7 Polarization: -80.27 SS G_CDS: -1.75 Total: -82.02 kcal Atomic # 8 Polarization: -68.29 SS G_CDS: -0.09 Total: -68.39 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Total: -84.93 6.49 -78.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876314724.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.439 kcal (2) G-P(sol) polarization free energy of solvation -84.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds