Wall clock time and date at job start Wed Apr 1 2020 05:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.78190 * 2 1 4 4 C 1.51336 * 109.62450 * 239.52142 * 2 1 3 5 5 S 1.75651 * 125.90074 * 44.10127 * 4 2 1 6 6 C 1.75780 * 91.06498 * 180.02562 * 5 4 2 7 7 C 1.33023 * 109.61426 * 359.97438 * 6 5 4 8 8 C 1.34806 * 124.14918 * 224.09985 * 4 2 1 9 9 C 1.52324 * 121.88880 * 359.93192 * 8 4 2 10 10 C 1.53150 * 108.19567 * 343.33111 * 9 8 4 11 11 N 1.46974 * 109.48552 * 50.41748 * 10 9 8 12 12 C 1.46897 * 111.00352 * 164.25729 * 11 10 9 13 13 C 1.50710 * 109.46843 * 293.80027 * 12 11 10 14 14 O 1.21284 * 119.99650 * 353.89953 * 13 12 11 15 15 N 1.34770 * 119.99878 * 173.90398 * 13 12 11 16 16 C 1.46503 * 119.99754 * 179.97438 * 15 13 12 17 17 C 1.50698 * 109.46948 * 90.00045 * 16 15 13 18 18 H 1.07999 * 120.00527 * 359.97438 * 17 16 15 19 19 C 1.37884 * 120.00052 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99920 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99946 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47054 * 90.00213 * 21 19 17 23 23 H 1.48504 * 109.46985 * 210.00090 * 21 19 17 24 24 H 1.48499 * 109.47498 * 329.99984 * 21 19 17 25 25 C 1.46504 * 120.00239 * 359.97438 * 15 13 12 26 26 C 1.53006 * 109.46765 * 90.00261 * 25 15 13 27 27 C 1.47200 * 109.46662 * 179.97438 * 26 25 15 28 28 N 6.96751 * 69.35444 * 56.93268 * 2 1 3 29 29 H 1.09001 * 109.47135 * 180.47651 * 1 2 3 30 30 H 1.08997 * 109.47440 * 300.48109 * 1 2 3 31 31 H 1.08999 * 109.46829 * 60.48013 * 1 2 3 32 32 H 1.08002 * 125.19493 * 180.02562 * 6 5 4 33 33 H 1.07996 * 122.19400 * 180.02562 * 7 6 5 34 34 H 1.09006 * 109.71805 * 223.65330 * 9 8 4 35 35 H 1.09002 * 109.71909 * 103.00691 * 9 8 4 36 36 H 1.08995 * 109.47255 * 170.42311 * 10 9 8 37 37 H 1.09000 * 109.46609 * 290.41861 * 10 9 8 38 38 H 1.08998 * 109.47342 * 53.79441 * 12 11 10 39 39 H 1.08993 * 109.47483 * 173.80213 * 12 11 10 40 40 H 1.09004 * 109.46720 * 209.99607 * 16 15 13 41 41 H 1.08995 * 109.47091 * 330.00180 * 16 15 13 42 42 H 0.96997 * 120.00679 * 179.97438 * 20 19 17 43 43 H 1.08999 * 109.47055 * 210.00049 * 25 15 13 44 44 H 1.08997 * 109.47134 * 330.00328 * 25 15 13 45 45 H 1.08999 * 109.47161 * 299.99723 * 26 25 15 46 46 H 1.08997 * 109.47240 * 60.00131 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0257 0.0000 4 6 2.0383 -0.7230 -1.2285 5 16 1.4218 -0.5358 -2.8626 6 6 2.5851 -1.7051 -3.4705 7 6 3.3362 -2.1508 -2.4672 8 6 3.0471 -1.6172 -1.2171 9 6 3.7819 -1.9850 0.0655 10 6 3.4760 -0.9134 1.1161 11 7 2.0233 -0.7039 1.1941 12 6 1.6610 0.0208 2.4193 13 6 1.9607 -0.8401 3.6194 14 8 2.3251 -1.9869 3.4672 15 7 1.8238 -0.3358 4.8617 16 6 2.1146 -1.1729 6.0283 17 6 3.5673 -1.0270 6.4016 18 1 4.2098 -0.3761 5.8272 19 6 4.0762 -1.7244 7.4767 20 7 3.2938 -2.5165 8.1766 21 14 5.8771 -1.5440 7.9390 22 1 6.0302 -0.4287 8.9075 23 1 6.3583 -2.8057 8.5569 24 1 6.6745 -1.2542 6.7202 25 6 1.3841 1.0496 5.0455 26 6 -0.1427 1.0922 5.1366 27 6 -0.5844 2.4841 5.3219 28 7 -0.9266 3.5575 5.4640 29 1 -0.3633 -1.0276 0.0085 30 1 -0.3634 0.5213 0.8856 31 1 -0.3633 0.5064 -0.8943 32 1 2.6766 -2.0138 -4.5014 33 1 4.1195 -2.8795 -2.6144 34 1 4.8550 -2.0200 -0.1225 35 1 3.4383 -2.9567 0.4205 36 1 3.8486 -1.2396 2.0870 37 1 3.9631 0.0203 0.8350 38 1 2.2388 0.9430 2.4804 39 1 0.5976 0.2590 2.3996 40 1 1.4910 -0.8588 6.8653 41 1 1.9039 -2.2152 5.7891 42 1 3.6518 -3.0075 8.9326 43 1 1.8141 1.4484 5.9642 44 1 1.7145 1.6511 4.1987 45 1 -0.5727 0.6934 4.2178 46 1 -0.4731 0.4908 5.9834 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880378181.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:36 Heat of formation + Delta-G solvation = 38.244571 kcal Electronic energy + Delta-G solvation = -28288.234786 eV Core-core repulsion = 24497.966192 eV Total energy + Delta-G solvation = -3790.268594 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.06757 -38.84295 -36.94443 -36.43036 -35.18125 -32.93416 -32.49133 -31.40535 -30.84348 -28.16356 -27.30768 -26.28430 -24.11986 -23.98114 -22.66500 -22.16159 -20.84650 -18.59981 -18.24331 -17.70827 -17.25085 -16.56420 -16.47509 -15.77550 -15.63564 -15.01522 -14.81743 -14.71691 -14.54427 -14.40924 -13.96890 -13.78011 -13.41056 -13.31866 -12.87498 -12.73102 -12.49640 -12.44574 -12.36389 -12.22766 -12.20162 -11.93548 -11.78443 -11.70924 -11.44371 -11.29519 -11.14793 -11.00545 -10.90561 -10.77358 -10.63846 -10.49755 -10.19137 -9.71403 -9.01502 -8.71734 -8.48692 -8.33876 -8.21962 -7.83876 -6.10113 -4.14826 0.91350 1.50157 1.89865 2.63924 2.71368 2.79511 3.26731 3.29250 3.34705 3.38435 3.47352 3.88562 4.24491 4.40365 4.48245 4.75436 4.88556 4.92786 4.98092 5.04323 5.10785 5.20774 5.24389 5.28019 5.31032 5.38671 5.42625 5.46682 5.48304 5.57744 5.69646 5.75899 5.81221 5.96518 6.02487 6.05517 6.08221 6.17955 6.33285 6.50517 6.85001 7.02694 7.08007 7.36399 7.43084 7.55547 7.85990 8.16142 8.26438 8.83867 9.00541 9.50840 10.97929 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.010176 B = 0.003253 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2750.820803 B = 8605.154044 C =10850.084702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.155 3.845 3 H 0.055 0.945 4 C -0.178 4.178 5 S 0.096 5.904 6 C -0.221 4.221 7 C -0.124 4.124 8 C -0.092 4.092 9 C -0.049 4.049 10 C 0.053 3.947 11 N -0.507 5.507 12 C 0.030 3.970 13 C 0.509 3.491 14 O -0.511 6.511 15 N -0.599 5.599 16 C 0.247 3.753 17 C -0.528 4.528 18 H 0.057 0.943 19 C 0.063 3.937 20 N -0.893 5.893 21 Si 0.896 3.104 22 H -0.281 1.281 23 H -0.285 1.285 24 H -0.274 1.274 25 C 0.117 3.883 26 C -0.051 4.051 27 C 0.217 3.783 28 N -0.446 5.446 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.162 0.838 33 H 0.137 0.863 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.031 0.969 38 H 0.059 0.941 39 H 0.102 0.898 40 H 0.034 0.966 41 H 0.047 0.953 42 H 0.264 0.736 43 H 0.094 0.906 44 H 0.073 0.927 45 H 0.106 0.894 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.501 4.949 -19.401 20.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.045 3.955 3 H 0.073 0.927 4 C -0.295 4.295 5 S 0.361 5.639 6 C -0.356 4.356 7 C -0.155 4.155 8 C -0.104 4.104 9 C -0.088 4.088 10 C -0.075 4.075 11 N -0.233 5.233 12 C -0.101 4.101 13 C 0.294 3.706 14 O -0.385 6.385 15 N -0.332 5.332 16 C 0.128 3.872 17 C -0.567 4.567 18 H 0.075 0.925 19 C -0.139 4.139 20 N -0.532 5.532 21 Si 0.723 3.277 22 H -0.207 1.207 23 H -0.211 1.211 24 H -0.199 1.199 25 C -0.010 4.010 26 C -0.092 4.092 27 C -0.101 4.101 28 N -0.123 5.123 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.180 0.820 33 H 0.155 0.845 34 H 0.095 0.905 35 H 0.108 0.892 36 H 0.118 0.882 37 H 0.049 0.951 38 H 0.076 0.924 39 H 0.120 0.880 40 H 0.052 0.948 41 H 0.065 0.935 42 H 0.073 0.927 43 H 0.112 0.888 44 H 0.092 0.908 45 H 0.124 0.876 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.182 6.184 -19.789 21.635 hybrid contribution 2.586 -0.396 0.817 2.741 sum -3.596 5.788 -18.972 20.158 Atomic orbital electron populations 1.21921 0.93063 1.03529 1.01757 1.20191 0.95537 0.93839 0.85932 0.92706 1.24664 1.02253 1.05328 0.97256 1.83938 1.37086 1.43061 0.99837 1.25378 1.02294 1.04720 1.03172 1.20003 1.01711 1.02221 0.91562 1.19719 0.97503 0.97416 0.95742 1.20589 0.98400 1.00135 0.89717 1.22213 0.86673 0.97210 1.01358 1.61778 1.14529 1.47454 0.99526 1.22194 1.02574 0.95486 0.89888 1.20096 0.78807 0.88039 0.83661 1.90694 1.44743 1.17986 1.85092 1.48232 1.65617 1.11892 1.07467 1.19328 0.96081 0.91054 0.80759 1.21403 0.95084 1.27041 1.13188 0.92470 1.24909 0.97945 0.94910 0.96165 1.69912 1.35581 1.28219 1.19447 0.86538 0.85034 0.77512 0.78576 1.20694 1.21105 1.19909 1.21307 0.90398 0.85198 1.04049 1.19915 0.98731 0.84642 1.05955 1.29103 0.93213 0.94937 0.92865 1.81191 1.09167 1.12585 1.09354 0.90854 0.91685 0.92143 0.82045 0.84501 0.90458 0.89158 0.88170 0.95115 0.92363 0.88021 0.94811 0.93503 0.92664 0.88765 0.90844 0.87614 0.86415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 8.87 37.16 0.33 -1.06 16 2 C 0.16 1.76 2.63 -68.43 -0.18 1.58 16 3 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 4 C -0.18 -2.11 5.90 -35.21 -0.21 -2.32 16 5 S 0.10 0.95 22.58 -107.50 -2.43 -1.48 16 6 C -0.22 -2.09 11.21 28.92 0.32 -1.77 16 7 C -0.12 -1.32 10.03 -41.12 -0.41 -1.73 16 8 C -0.09 -1.13 5.82 -104.76 -0.61 -1.74 16 9 C -0.05 -0.63 6.41 -27.00 -0.17 -0.80 16 10 C 0.05 0.75 5.08 -3.71 -0.02 0.73 16 11 N -0.51 -6.91 4.10 -228.76 -0.94 -7.85 16 12 C 0.03 0.38 4.05 -4.97 -0.02 0.36 16 13 C 0.51 8.95 7.08 -10.98 -0.08 8.88 16 14 O -0.51 -11.34 14.40 5.55 0.08 -11.26 16 15 N -0.60 -10.48 2.46 -175.05 -0.43 -10.91 16 16 C 0.25 5.67 5.16 -5.19 -0.03 5.64 16 17 C -0.53 -13.75 9.39 -34.44 -0.32 -14.07 16 18 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 20 N -0.89 -25.14 13.29 55.43 0.74 -24.40 16 21 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 23 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 25 C 0.12 1.48 5.19 -4.04 -0.02 1.46 16 26 C -0.05 -0.50 6.03 -29.51 -0.18 -0.68 16 27 C 0.22 2.51 15.43 -20.77 -0.32 2.19 16 28 N -0.45 -6.37 18.53 42.14 0.78 -5.59 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.54 6.40 -51.93 -0.33 0.21 16 31 H 0.06 0.50 7.72 -51.93 -0.40 0.10 16 32 H 0.16 1.13 8.06 -52.49 -0.42 0.70 16 33 H 0.14 1.21 8.06 -52.49 -0.42 0.78 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.10 1.70 6.03 -51.93 -0.31 1.39 16 37 H 0.03 0.40 8.05 -51.93 -0.42 -0.02 16 38 H 0.06 0.67 7.05 -51.93 -0.37 0.30 16 39 H 0.10 1.04 5.35 -51.93 -0.28 0.76 16 40 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 41 H 0.05 1.24 7.42 -51.93 -0.39 0.86 16 42 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 43 H 0.09 1.29 8.07 -51.93 -0.42 0.87 16 44 H 0.07 0.77 6.27 -51.93 -0.33 0.44 16 45 H 0.11 0.83 7.41 -51.93 -0.38 0.45 16 46 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 390.74 15.07 5.89 5.89 Total: -1.00 -32.22 390.74 -9.89 -42.11 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -6.55 Total: -0.66 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: -2.01 Total: -1.72 kcal Atomic # 7 Polarization: -48.90 SS G_CDS: 0.15 Total: -48.75 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.08 Total: -11.26 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 0.95 SS G_CDS: -2.43 Total: -1.48 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.22 -9.89 -42.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880378181.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.352 kcal (2) G-P(sol) polarization free energy of solvation -32.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds