Wall clock time and date at job start Wed Apr 1 2020 05:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.78190 * 2 1 4 4 C 1.51336 * 109.62450 * 239.52142 * 2 1 3 5 5 S 1.75651 * 125.90074 * 44.10127 * 4 2 1 6 6 C 1.75780 * 91.06498 * 180.02562 * 5 4 2 7 7 C 1.33023 * 109.61426 * 359.97438 * 6 5 4 8 8 C 1.34806 * 124.14918 * 224.09985 * 4 2 1 9 9 C 1.52324 * 121.88880 * 359.93192 * 8 4 2 10 10 C 1.53150 * 108.19567 * 343.33111 * 9 8 4 11 11 N 1.46974 * 109.48552 * 50.41748 * 10 9 8 12 12 C 1.46897 * 111.00352 * 164.25729 * 11 10 9 13 13 C 1.50710 * 109.46843 * 293.80027 * 12 11 10 14 14 O 1.21284 * 119.99650 * 353.89953 * 13 12 11 15 15 N 1.34770 * 119.99878 * 173.90398 * 13 12 11 16 16 C 1.46503 * 119.99754 * 179.97438 * 15 13 12 17 17 C 1.50698 * 109.46948 * 90.00045 * 16 15 13 18 18 H 1.07999 * 120.00527 * 359.97438 * 17 16 15 19 19 C 1.37884 * 120.00052 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99920 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99946 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47054 * 90.00213 * 21 19 17 23 23 H 1.48504 * 109.46985 * 210.00090 * 21 19 17 24 24 H 1.48499 * 109.47498 * 329.99984 * 21 19 17 25 25 C 1.46504 * 120.00239 * 359.97438 * 15 13 12 26 26 C 1.53006 * 109.46765 * 90.00261 * 25 15 13 27 27 C 1.47200 * 109.46662 * 179.97438 * 26 25 15 28 28 N 6.96751 * 69.35444 * 56.93268 * 2 1 3 29 29 H 1.09001 * 109.47135 * 180.47651 * 1 2 3 30 30 H 1.08997 * 109.47440 * 300.48109 * 1 2 3 31 31 H 1.08999 * 109.46829 * 60.48013 * 1 2 3 32 32 H 1.08002 * 125.19493 * 180.02562 * 6 5 4 33 33 H 1.07996 * 122.19400 * 180.02562 * 7 6 5 34 34 H 1.09006 * 109.71805 * 223.65330 * 9 8 4 35 35 H 1.09002 * 109.71909 * 103.00691 * 9 8 4 36 36 H 1.08995 * 109.47255 * 170.42311 * 10 9 8 37 37 H 1.09000 * 109.46609 * 290.41861 * 10 9 8 38 38 H 1.08998 * 109.47342 * 53.79441 * 12 11 10 39 39 H 1.08993 * 109.47483 * 173.80213 * 12 11 10 40 40 H 1.09004 * 109.46720 * 209.99607 * 16 15 13 41 41 H 1.08995 * 109.47091 * 330.00180 * 16 15 13 42 42 H 0.96997 * 120.00679 * 179.97438 * 20 19 17 43 43 H 1.08999 * 109.47055 * 210.00049 * 25 15 13 44 44 H 1.08997 * 109.47134 * 330.00328 * 25 15 13 45 45 H 1.08999 * 109.47161 * 299.99723 * 26 25 15 46 46 H 1.08997 * 109.47240 * 60.00131 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0257 0.0000 4 6 2.0383 -0.7230 -1.2285 5 16 1.4218 -0.5358 -2.8626 6 6 2.5851 -1.7051 -3.4705 7 6 3.3362 -2.1508 -2.4672 8 6 3.0471 -1.6172 -1.2171 9 6 3.7819 -1.9850 0.0655 10 6 3.4760 -0.9134 1.1161 11 7 2.0233 -0.7039 1.1941 12 6 1.6610 0.0208 2.4193 13 6 1.9607 -0.8401 3.6194 14 8 2.3251 -1.9869 3.4672 15 7 1.8238 -0.3358 4.8617 16 6 2.1146 -1.1729 6.0283 17 6 3.5673 -1.0270 6.4016 18 1 4.2098 -0.3761 5.8272 19 6 4.0762 -1.7244 7.4767 20 7 3.2938 -2.5165 8.1766 21 14 5.8771 -1.5440 7.9390 22 1 6.0302 -0.4287 8.9075 23 1 6.3583 -2.8057 8.5569 24 1 6.6745 -1.2542 6.7202 25 6 1.3841 1.0496 5.0455 26 6 -0.1427 1.0922 5.1366 27 6 -0.5844 2.4841 5.3219 28 7 -0.9266 3.5575 5.4640 29 1 -0.3633 -1.0276 0.0085 30 1 -0.3634 0.5213 0.8856 31 1 -0.3633 0.5064 -0.8943 32 1 2.6766 -2.0138 -4.5014 33 1 4.1195 -2.8795 -2.6144 34 1 4.8550 -2.0200 -0.1225 35 1 3.4383 -2.9567 0.4205 36 1 3.8486 -1.2396 2.0870 37 1 3.9631 0.0203 0.8350 38 1 2.2388 0.9430 2.4804 39 1 0.5976 0.2590 2.3996 40 1 1.4910 -0.8588 6.8653 41 1 1.9039 -2.2152 5.7891 42 1 3.6518 -3.0075 8.9326 43 1 1.8141 1.4484 5.9642 44 1 1.7145 1.6511 4.1987 45 1 -0.5727 0.6934 4.2178 46 1 -0.4731 0.4908 5.9834 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880378181.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:35 Heat of formation + Delta-G solvation = 19.236839 kcal Electronic energy + Delta-G solvation = -28289.059023 eV Core-core repulsion = 24497.966192 eV Total energy + Delta-G solvation = -3791.092832 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.20221 -39.98674 -37.99124 -37.39316 -36.55021 -34.84133 -33.40794 -32.44528 -32.06831 -29.64735 -28.20219 -27.59880 -25.32981 -25.16111 -24.05975 -23.15159 -21.75997 -19.91010 -19.17027 -18.80647 -18.34663 -18.16160 -17.72611 -17.03001 -16.74156 -16.31127 -15.98724 -15.78518 -15.63030 -15.43615 -15.31074 -14.73277 -14.53783 -14.40655 -14.21820 -13.79380 -13.70051 -13.52738 -13.46534 -13.32454 -13.11294 -13.05813 -12.98984 -12.85870 -12.69139 -12.59839 -12.49276 -12.34045 -12.15412 -12.07807 -11.84554 -11.68938 -11.63288 -11.41787 -10.56160 -10.44224 -9.55618 -9.40437 -9.18627 -9.13792 -8.15496 -6.27455 0.11176 0.72066 1.11390 1.40290 1.42782 1.51722 1.72473 1.80589 1.87179 1.96562 2.25589 2.44993 2.89089 3.15064 3.20266 3.63768 3.79297 3.90477 4.03325 4.09178 4.13852 4.18704 4.25150 4.32141 4.38874 4.49422 4.56834 4.60624 4.65729 4.70431 4.87129 4.89959 4.92616 4.98606 5.08760 5.10792 5.14964 5.22619 5.33188 5.38310 5.45847 5.63752 5.65023 5.90975 5.99850 6.10695 6.16559 6.63445 6.80440 6.87264 7.38382 7.61820 8.90977 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.010176 B = 0.003253 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2750.820803 B = 8605.154044 C =10850.084702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.154 3.846 3 H 0.068 0.932 4 C -0.198 4.198 5 S 0.126 5.874 6 C -0.216 4.216 7 C -0.142 4.142 8 C -0.110 4.110 9 C -0.046 4.046 10 C 0.058 3.942 11 N -0.526 5.526 12 C 0.041 3.959 13 C 0.504 3.496 14 O -0.567 6.567 15 N -0.600 5.600 16 C 0.263 3.737 17 C -0.537 4.537 18 H 0.053 0.947 19 C 0.011 3.989 20 N -0.926 5.926 21 Si 0.955 3.045 22 H -0.268 1.268 23 H -0.286 1.286 24 H -0.273 1.273 25 C 0.113 3.887 26 C -0.038 4.038 27 C 0.246 3.754 28 N -0.489 5.489 29 H 0.057 0.943 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.188 0.812 33 H 0.149 0.851 34 H 0.088 0.912 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.041 0.959 38 H 0.082 0.918 39 H 0.137 0.863 40 H 0.033 0.967 41 H 0.003 0.997 42 H 0.264 0.736 43 H 0.082 0.918 44 H 0.105 0.895 45 H 0.138 0.862 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.053 6.934 -21.510 23.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.045 3.955 3 H 0.086 0.914 4 C -0.315 4.315 5 S 0.391 5.609 6 C -0.351 4.351 7 C -0.172 4.172 8 C -0.123 4.123 9 C -0.086 4.086 10 C -0.070 4.070 11 N -0.252 5.252 12 C -0.090 4.090 13 C 0.292 3.708 14 O -0.445 6.445 15 N -0.332 5.332 16 C 0.141 3.859 17 C -0.576 4.576 18 H 0.071 0.929 19 C -0.188 4.188 20 N -0.566 5.566 21 Si 0.781 3.219 22 H -0.193 1.193 23 H -0.211 1.211 24 H -0.198 1.198 25 C -0.012 4.012 26 C -0.080 4.080 27 C -0.071 4.071 28 N -0.167 5.167 29 H 0.076 0.924 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.206 0.794 33 H 0.166 0.834 34 H 0.106 0.894 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.059 0.941 38 H 0.100 0.900 39 H 0.154 0.846 40 H 0.051 0.949 41 H 0.021 0.979 42 H 0.073 0.927 43 H 0.101 0.899 44 H 0.123 0.877 45 H 0.155 0.845 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.754 8.223 -21.911 24.358 hybrid contribution 2.742 -1.047 1.412 3.257 sum -4.013 7.177 -20.499 22.087 Atomic orbital electron populations 1.21929 0.91600 1.03021 1.03432 1.20311 0.96583 0.93981 0.84609 0.91415 1.24919 1.02388 1.05513 0.98728 1.83786 1.36501 1.42631 0.97978 1.25760 1.01332 1.03836 1.04190 1.20138 1.02766 1.03039 0.91240 1.19776 0.98150 0.98469 0.95857 1.20486 0.99267 0.98599 0.90250 1.22055 0.87482 0.97796 0.99660 1.61722 1.14026 1.48764 1.00680 1.22171 1.04937 0.94613 0.87232 1.20990 0.77310 0.87870 0.84661 1.90674 1.47132 1.20755 1.85920 1.48090 1.65640 1.13284 1.06145 1.18751 0.94626 0.89850 0.82623 1.21745 0.96572 1.26439 1.12797 0.92901 1.25703 1.01869 0.94782 0.96415 1.70021 1.37294 1.29241 1.20049 0.85595 0.80306 0.77658 0.78331 1.19350 1.21142 1.19828 1.21521 0.92235 0.82455 1.04968 1.19847 0.96620 0.83773 1.07711 1.29125 0.91990 0.94574 0.91407 1.81237 1.10601 1.13909 1.10997 0.92418 0.89886 0.90611 0.79437 0.83367 0.89386 0.91603 0.91816 0.94074 0.90035 0.84567 0.94937 0.97899 0.92657 0.89917 0.87712 0.84469 0.86259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 8.87 71.98 0.64 -1.65 16 2 C 0.15 3.14 2.63 44.33 0.12 3.26 16 3 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 4 C -0.20 -4.36 5.90 25.10 0.15 -4.22 16 5 S 0.13 2.16 22.58 -56.49 -1.28 0.88 16 6 C -0.22 -3.58 11.21 66.66 0.75 -2.83 16 7 C -0.14 -2.82 10.03 21.28 0.21 -2.60 16 8 C -0.11 -2.63 5.82 -19.96 -0.12 -2.75 16 9 C -0.05 -1.23 6.41 30.42 0.20 -1.04 16 10 C 0.06 1.65 5.08 86.34 0.44 2.09 16 11 N -0.53 -13.74 4.10 -877.66 -3.60 -17.34 16 12 C 0.04 0.96 4.05 85.56 0.35 1.30 16 13 C 0.50 17.70 7.08 87.66 0.62 18.32 16 14 O -0.57 -26.34 14.40 -3.04 -0.04 -26.38 16 15 N -0.60 -20.82 2.46 -826.13 -2.03 -22.85 16 16 C 0.26 12.48 5.16 85.63 0.44 12.92 16 17 C -0.54 -28.58 9.39 25.60 0.24 -28.34 16 18 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 19 C 0.01 0.62 5.46 84.66 0.46 1.09 16 20 N -0.93 -53.51 13.29 21.45 0.28 -53.23 16 21 Si 0.96 43.37 29.54 68.60 2.03 45.40 16 22 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 23 H -0.29 -12.90 7.11 99.48 0.71 -12.20 16 24 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 25 C 0.11 2.62 5.19 86.38 0.45 3.07 16 26 C -0.04 -0.65 6.03 28.79 0.17 -0.48 16 27 C 0.25 5.07 15.43 89.45 1.38 6.45 16 28 N -0.49 -13.05 18.53 20.00 0.37 -12.68 16 29 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.08 1.01 6.40 -2.39 -0.02 1.00 16 31 H 0.08 0.99 7.72 -2.39 -0.02 0.97 16 32 H 0.19 2.00 8.06 -2.91 -0.02 1.98 16 33 H 0.15 2.47 8.06 -2.91 -0.02 2.44 16 34 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 35 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.06 2.28 6.03 -2.39 -0.01 2.26 16 37 H 0.04 1.05 8.05 -2.39 -0.02 1.03 16 38 H 0.08 1.57 7.05 -2.39 -0.02 1.55 16 39 H 0.14 2.21 5.35 -2.39 -0.01 2.20 16 40 H 0.03 1.54 8.07 -2.38 -0.02 1.52 16 41 H 0.00 0.16 7.42 -2.39 -0.02 0.14 16 42 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 43 H 0.08 2.15 8.07 -2.39 -0.02 2.13 16 44 H 0.10 1.81 6.27 -2.39 -0.01 1.79 16 45 H 0.14 1.56 7.41 -2.39 -0.02 1.54 16 46 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -73.94 390.74 3.22 -70.72 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: 1.00 Total: 10.89 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: 6.49 Total: 4.59 kcal Atomic # 7 Polarization: -101.12 SS G_CDS: -4.98 Total: -106.09 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -0.04 Total: -26.38 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Atomic # 16 Polarization: 2.16 SS G_CDS: -1.28 Total: 0.88 kcal Total: -73.94 3.22 -70.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880378181.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.954 kcal (2) G-P(sol) polarization free energy of solvation -73.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds