Wall clock time and date at job start Wed Apr 1 2020 05:27:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09002 * 110.81102 * 2 1
4 4 C 1.54998 * 110.90440 * 123.63340 * 2 1 3
5 5 O 1.44382 * 103.49187 * 155.22058 * 4 2 1
6 6 C 1.43749 * 106.97364 * 319.93392 * 5 4 2
7 7 H 1.08995 * 109.87671 * 266.94023 * 6 5 4
8 8 C 1.50693 * 109.87797 * 145.93656 * 6 5 4
9 9 O 1.20832 * 119.99877 * 356.45827 * 8 6 5
10 10 O 1.34228 * 120.00348 * 176.45125 * 8 6 5
11 11 C 1.45196 * 117.00251 * 180.02562 * 10 8 6
12 12 C 1.50704 * 109.46974 * 180.02562 * 11 10 8
13 13 O 1.21282 * 120.00023 * 5.35700 * 12 11 10
14 14 N 1.34781 * 119.99843 * 185.35864 * 12 11 10
15 15 C 1.46496 * 119.99652 * 174.87823 * 14 12 11
16 16 C 1.50702 * 109.47108 * 90.00241 * 15 14 12
17 17 H 1.07996 * 119.99854 * 359.97438 * 16 15 14
18 18 C 1.37875 * 119.99750 * 179.97438 * 16 15 14
19 19 N 1.31516 * 120.00820 * 0.02562 * 18 16 15
20 20 Si 1.86804 * 119.99686 * 180.02562 * 18 16 15
21 21 H 1.48493 * 109.47527 * 59.99845 * 20 18 16
22 22 H 1.48498 * 109.47123 * 180.02562 * 20 18 16
23 23 H 1.48508 * 109.47027 * 300.00048 * 20 18 16
24 24 C 1.39916 * 119.99986 * 354.60586 * 14 12 11
25 25 C 1.38880 * 120.07013 * 111.50936 * 24 14 12
26 26 C 1.38109 * 119.92818 * 179.76496 * 25 24 14
27 27 C 1.38285 * 120.06858 * 0.48498 * 26 25 24
28 28 C 1.38275 * 120.14435 * 359.77099 * 27 26 25
29 29 C 1.38114 * 120.07117 * 359.97438 * 28 27 26
30 30 C 1.54102 * 107.29117 * 26.51855 * 6 5 4
31 31 H 1.09002 * 109.46922 * 297.83038 * 1 2 3
32 32 H 1.09004 * 109.46599 * 57.81979 * 1 2 3
33 33 H 1.08996 * 109.47361 * 177.82463 * 1 2 3
34 34 H 1.08995 * 110.61980 * 36.71314 * 4 2 1
35 35 H 1.09002 * 110.61548 * 273.71702 * 4 2 1
36 36 H 1.09001 * 109.47310 * 60.00702 * 11 10 8
37 37 H 1.09003 * 109.47482 * 299.99913 * 11 10 8
38 38 H 1.09005 * 109.47404 * 210.00360 * 15 14 12
39 39 H 1.09008 * 109.47412 * 330.00109 * 15 14 12
40 40 H 0.96989 * 120.00655 * 179.97438 * 19 18 16
41 41 H 1.08004 * 120.03363 * 359.97438 * 25 24 14
42 42 H 1.08003 * 119.96556 * 180.25736 * 26 25 24
43 43 H 1.08003 * 119.92608 * 179.74532 * 27 26 25
44 44 H 1.08002 * 119.96729 * 179.97438 * 28 27 26
45 45 H 1.07998 * 120.03987 * 179.97438 * 29 28 27
46 46 H 1.08992 * 110.49272 * 116.64613 * 30 6 5
47 47 H 1.09001 * 110.48449 * 239.29271 * 30 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9173 1.0189 0.0000
4 6 2.0831 -0.8020 1.2056
5 8 3.3941 -1.2143 0.7630
6 6 3.2717 -1.5886 -0.6195
7 1 3.0851 -2.6596 -0.6984
8 6 4.5348 -1.2329 -1.3604
9 8 5.4279 -0.6536 -0.7885
10 8 4.6680 -1.5596 -2.6555
11 6 5.9117 -1.1861 -3.3050
12 6 5.8798 -1.6308 -4.7446
13 8 4.8698 -2.1180 -5.2066
14 7 6.9737 -1.4870 -5.5188
15 6 6.9806 -2.0202 -6.8832
16 6 6.4771 -0.9672 -7.8366
17 1 6.1811 0.0020 -7.4633
18 6 6.3943 -1.2413 -9.1852
19 7 6.7542 -2.4218 -9.6398
20 14 5.7708 0.0641 -10.3670
21 1 6.6522 1.2571 -10.2969
22 1 5.7776 -0.4764 -11.7501
23 1 4.3860 0.4493 -9.9935
24 6 8.1006 -0.8235 -5.0211
25 6 9.2698 -1.5298 -4.7704
26 6 10.3818 -0.8711 -4.2838
27 6 10.3289 0.4885 -4.0368
28 6 9.1647 1.1937 -4.2804
29 6 8.0507 0.5418 -4.7720
30 6 2.0825 -0.8017 -1.2036
31 1 -0.3633 0.4798 0.9088
32 1 -0.3633 0.5474 -0.8699
33 1 -0.3634 -1.0269 -0.0390
34 1 1.4561 -1.6700 1.4093
35 1 2.1582 -0.1660 2.0876
36 1 6.7467 -1.6662 -2.7946
37 1 6.0334 -0.1037 -3.2621
38 1 7.9969 -2.3028 -7.1578
39 1 6.3336 -2.8960 -6.9344
40 1 6.6956 -2.6147 -10.5885
41 1 9.3103 -2.5925 -4.9589
42 1 11.2927 -1.4191 -4.0926
43 1 11.1987 1.0006 -3.6525
44 1 9.1264 2.2554 -4.0861
45 1 7.1415 1.0930 -4.9616
46 1 2.4209 -0.1260 -1.9890
47 1 1.3246 -1.4848 -1.5872
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000885561541.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:27:05
Heat of formation + Delta-G solvation = -129.517039 kcal
Electronic energy + Delta-G solvation = -30508.785275 eV
Core-core repulsion = 26236.196369 eV
Total energy + Delta-G solvation = -4272.588906 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.161 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-40.96868 -40.01183 -39.25101 -38.10121 -36.32696 -34.90595 -33.96024 -32.76548
-31.13834 -30.74824 -29.52457 -28.94195 -26.80993 -26.59223 -24.31015 -22.99175
-22.53200 -22.11460 -21.11699 -20.85786 -19.24781 -18.09279 -17.48846 -16.91734
-16.79004 -16.49756 -15.99847 -15.95378 -15.77225 -15.23502 -14.99233 -14.86779
-14.35253 -14.25232 -14.16775 -13.95632 -13.35440 -13.21463 -13.17013 -12.85526
-12.75630 -12.45433 -12.36538 -12.20627 -12.00535 -11.71140 -11.53226 -11.26260
-11.24160 -11.14729 -11.10705 -10.89985 -10.70518 -10.67243 -10.56501 -10.22070
-10.02549 -9.80948 -9.43748 -8.73557 -8.64362 -8.48067 -7.80106 -6.10206
-4.14900 1.49516 1.59893 2.06305 2.14602 3.06087 3.30085 3.33867
3.36774 3.49891 3.74082 3.96803 4.09700 4.35838 4.38898 4.40551
4.58568 4.73910 4.79763 4.88939 5.06059 5.11336 5.14158 5.16662
5.21597 5.24632 5.25284 5.31093 5.31748 5.36362 5.40953 5.63001
5.65514 5.68649 5.77109 5.82422 5.95684 6.21065 6.26375 6.36900
6.55327 6.68853 6.72431 6.88496 7.13416 7.25042 7.35995 7.66292
7.84496 8.11865 8.17609 8.69489 8.88668 9.49549 10.98277
Molecular weight = 347.16amu
Principal moments of inertia in cm(-1)
A = 0.009836 B = 0.003049 C = 0.002534
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2845.975147 B = 9182.245008 C =11046.416890
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.129 4.129
3 H 0.089 0.911
4 C 0.049 3.951
5 O -0.349 6.349
6 C 0.092 3.908
7 H 0.112 0.888
8 C 0.458 3.542
9 O -0.489 6.489
10 O -0.327 6.327
11 C 0.052 3.948
12 C 0.515 3.485
13 O -0.502 6.502
14 N -0.555 5.555
15 C 0.251 3.749
16 C -0.528 4.528
17 H 0.058 0.942
18 C 0.064 3.936
19 N -0.894 5.894
20 Si 0.900 3.100
21 H -0.276 1.276
22 H -0.285 1.285
23 H -0.275 1.275
24 C 0.152 3.848
25 C -0.122 4.122
26 C -0.109 4.109
27 C -0.130 4.130
28 C -0.108 4.108
29 C -0.125 4.125
30 C -0.141 4.141
31 H 0.060 0.940
32 H 0.063 0.937
33 H 0.061 0.939
34 H 0.069 0.931
35 H 0.099 0.901
36 H 0.097 0.903
37 H 0.098 0.902
38 H 0.039 0.961
39 H 0.049 0.951
40 H 0.265 0.735
41 H 0.126 0.874
42 H 0.123 0.877
43 H 0.120 0.880
44 H 0.122 0.878
45 H 0.123 0.877
46 H 0.088 0.912
47 H 0.097 0.903
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.151 4.228 19.789 20.657
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.147 4.147
3 H 0.108 0.892
4 C -0.027 4.027
5 O -0.268 6.268
6 C 0.032 3.968
7 H 0.129 0.871
8 C 0.299 3.701
9 O -0.375 6.375
10 O -0.243 6.243
11 C -0.026 4.026
12 C 0.301 3.699
13 O -0.376 6.376
14 N -0.286 5.286
15 C 0.134 3.866
16 C -0.566 4.566
17 H 0.076 0.924
18 C -0.139 4.139
19 N -0.533 5.533
20 Si 0.727 3.273
21 H -0.202 1.202
22 H -0.211 1.211
23 H -0.201 1.201
24 C 0.061 3.939
25 C -0.142 4.142
26 C -0.128 4.128
27 C -0.149 4.149
28 C -0.127 4.127
29 C -0.145 4.145
30 C -0.179 4.179
31 H 0.079 0.921
32 H 0.082 0.918
33 H 0.080 0.920
34 H 0.087 0.913
35 H 0.117 0.883
36 H 0.115 0.885
37 H 0.116 0.884
38 H 0.057 0.943
39 H 0.067 0.933
40 H 0.075 0.925
41 H 0.144 0.856
42 H 0.141 0.859
43 H 0.138 0.862
44 H 0.140 0.860
45 H 0.141 0.859
46 H 0.106 0.894
47 H 0.115 0.885
Dipole moment (debyes) X Y Z Total
from point charges -4.242 3.973 19.593 20.437
hybrid contribution -0.154 0.842 -0.989 1.308
sum -4.397 4.816 18.604 19.713
Atomic orbital electron populations
1.21726 0.93257 1.02497 1.02474 1.22794 0.97092 1.00532 0.94305
0.89243 1.23777 0.83470 0.97978 0.97481 1.88989 1.29841 1.86297
1.21640 1.22140 0.90312 1.01360 0.82950 0.87055 1.23522 0.89143
0.76583 0.80895 1.90686 1.41317 1.37369 1.68153 1.86508 1.39906
1.73686 1.24195 1.22920 0.84901 1.02309 0.92439 1.19717 0.83811
0.80359 0.86053 1.90735 1.29818 1.42877 1.74146 1.45876 1.10956
1.55523 1.16197 1.19488 0.98448 0.95367 0.73285 1.21306 1.44137
0.99450 0.91740 0.92364 1.24901 0.95175 0.95717 0.98089 1.69906
1.47641 1.20940 1.14798 0.86532 0.79543 0.81521 0.79713 1.20178
1.21092 1.20088 1.17781 0.88441 0.91044 0.96680 1.21331 0.92858
1.00381 0.99619 1.20990 0.97825 0.94626 0.99316 1.21096 0.97922
0.94493 1.01360 1.20985 0.92809 0.99696 0.99169 1.21390 0.99512
0.93327 1.00224 1.23013 0.96308 0.99691 0.98847 0.92078 0.91827
0.92039 0.91320 0.88274 0.88537 0.88365 0.94305 0.93336 0.92530
0.85590 0.85921 0.86221 0.85976 0.85875 0.89366 0.88474
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -0.79 9.19 37.16 0.34 -0.45 16
2 C -0.13 -0.97 3.72 -88.61 -0.33 -1.30 16
3 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16
4 C 0.05 0.39 7.17 38.21 0.27 0.66 16
5 O -0.35 -4.22 10.74 -54.84 -0.59 -4.81 16
6 C 0.09 1.05 3.96 -27.31 -0.11 0.94 16
7 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16
8 C 0.46 6.90 7.06 36.00 0.25 7.16 16
9 O -0.49 -8.57 16.28 -25.39 -0.41 -8.98 16
10 O -0.33 -5.47 9.76 -45.88 -0.45 -5.92 16
11 C 0.05 0.88 4.65 36.01 0.17 1.05 16
12 C 0.52 10.90 7.62 -10.98 -0.08 10.82 16
13 O -0.50 -12.56 16.14 -14.04 -0.23 -12.79 16
14 N -0.56 -11.91 2.50 -114.73 -0.29 -12.20 16
15 C 0.25 6.48 5.07 -5.19 -0.03 6.46 16
16 C -0.53 -14.84 9.39 -34.44 -0.32 -15.16 16
17 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16
18 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16
19 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16
20 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16
21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16
22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16
23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16
24 C 0.15 2.76 4.35 -83.69 -0.36 2.40 16
25 C -0.12 -1.94 9.72 -39.39 -0.38 -2.33 16
26 C -0.11 -1.44 10.04 -39.61 -0.40 -1.84 16
27 C -0.13 -1.63 10.04 -39.55 -0.40 -2.03 16
28 C -0.11 -1.46 10.04 -39.61 -0.40 -1.86 16
29 C -0.12 -2.04 8.55 -39.39 -0.34 -2.37 16
30 C -0.14 -1.31 6.22 -25.20 -0.16 -1.47 16
31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16
32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16
33 H 0.06 0.31 8.10 -51.93 -0.42 -0.11 16
34 H 0.07 0.42 8.05 -51.93 -0.42 0.00 16
35 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16
36 H 0.10 1.52 8.03 -51.93 -0.42 1.10 16
37 H 0.10 1.56 7.13 -51.93 -0.37 1.19 16
38 H 0.04 1.02 7.89 -51.93 -0.41 0.61 16
39 H 0.05 1.38 7.50 -51.92 -0.39 0.99 16
40 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16
41 H 0.13 1.93 8.06 -52.48 -0.42 1.51 16
42 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16
43 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16
44 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16
45 H 0.12 2.00 8.03 -52.49 -0.42 1.58 16
46 H 0.09 0.93 7.69 -51.93 -0.40 0.53 16
47 H 0.10 0.75 7.83 -51.93 -0.41 0.34 16
LS Contribution 401.12 15.07 6.04 6.04
Total: -1.00 -34.79 401.12 -9.57 -44.36
By element:
Atomic # 1 Polarization: 7.67 SS G_CDS: -7.00 Total: 0.67 kcal
Atomic # 6 Polarization: 4.74 SS G_CDS: -2.37 Total: 2.37 kcal
Atomic # 7 Polarization: -38.15 SS G_CDS: 0.45 Total: -37.70 kcal
Atomic # 8 Polarization: -30.82 SS G_CDS: -1.68 Total: -32.50 kcal
Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal
Total LS contribution 6.04 Total: 6.04 kcal
Total: -34.79 -9.57 -44.36 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000885561541.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -85.153 kcal
(2) G-P(sol) polarization free energy of solvation -34.793 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.946 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.571 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.364 kcal
(6) G-S(sol) free energy of system = (1) + (5) -129.517 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds