Wall clock time and date at job start Wed Apr 1 2020 05:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.81102 * 2 1 4 4 C 1.54998 * 110.90440 * 123.63340 * 2 1 3 5 5 O 1.44382 * 103.49187 * 155.22058 * 4 2 1 6 6 C 1.43749 * 106.97364 * 319.93392 * 5 4 2 7 7 H 1.08995 * 109.87671 * 266.94023 * 6 5 4 8 8 C 1.50693 * 109.87797 * 145.93656 * 6 5 4 9 9 O 1.20832 * 119.99877 * 356.45827 * 8 6 5 10 10 O 1.34228 * 120.00348 * 176.45125 * 8 6 5 11 11 C 1.45196 * 117.00251 * 180.02562 * 10 8 6 12 12 C 1.50704 * 109.46974 * 180.02562 * 11 10 8 13 13 O 1.21282 * 120.00023 * 5.35700 * 12 11 10 14 14 N 1.34781 * 119.99843 * 185.35864 * 12 11 10 15 15 C 1.46496 * 119.99652 * 174.87823 * 14 12 11 16 16 C 1.50702 * 109.47108 * 90.00241 * 15 14 12 17 17 H 1.07996 * 119.99854 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99750 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00820 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99686 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47527 * 59.99845 * 20 18 16 22 22 H 1.48498 * 109.47123 * 180.02562 * 20 18 16 23 23 H 1.48508 * 109.47027 * 300.00048 * 20 18 16 24 24 C 1.39916 * 119.99986 * 354.60586 * 14 12 11 25 25 C 1.38880 * 120.07013 * 111.50936 * 24 14 12 26 26 C 1.38109 * 119.92818 * 179.76496 * 25 24 14 27 27 C 1.38285 * 120.06858 * 0.48498 * 26 25 24 28 28 C 1.38275 * 120.14435 * 359.77099 * 27 26 25 29 29 C 1.38114 * 120.07117 * 359.97438 * 28 27 26 30 30 C 1.54102 * 107.29117 * 26.51855 * 6 5 4 31 31 H 1.09002 * 109.46922 * 297.83038 * 1 2 3 32 32 H 1.09004 * 109.46599 * 57.81979 * 1 2 3 33 33 H 1.08996 * 109.47361 * 177.82463 * 1 2 3 34 34 H 1.08995 * 110.61980 * 36.71314 * 4 2 1 35 35 H 1.09002 * 110.61548 * 273.71702 * 4 2 1 36 36 H 1.09001 * 109.47310 * 60.00702 * 11 10 8 37 37 H 1.09003 * 109.47482 * 299.99913 * 11 10 8 38 38 H 1.09005 * 109.47404 * 210.00360 * 15 14 12 39 39 H 1.09008 * 109.47412 * 330.00109 * 15 14 12 40 40 H 0.96989 * 120.00655 * 179.97438 * 19 18 16 41 41 H 1.08004 * 120.03363 * 359.97438 * 25 24 14 42 42 H 1.08003 * 119.96556 * 180.25736 * 26 25 24 43 43 H 1.08003 * 119.92608 * 179.74532 * 27 26 25 44 44 H 1.08002 * 119.96729 * 179.97438 * 28 27 26 45 45 H 1.07998 * 120.03987 * 179.97438 * 29 28 27 46 46 H 1.08992 * 110.49272 * 116.64613 * 30 6 5 47 47 H 1.09001 * 110.48449 * 239.29271 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9173 1.0189 0.0000 4 6 2.0831 -0.8020 1.2056 5 8 3.3941 -1.2143 0.7630 6 6 3.2717 -1.5886 -0.6195 7 1 3.0851 -2.6596 -0.6984 8 6 4.5348 -1.2329 -1.3604 9 8 5.4279 -0.6536 -0.7885 10 8 4.6680 -1.5596 -2.6555 11 6 5.9117 -1.1861 -3.3050 12 6 5.8798 -1.6308 -4.7446 13 8 4.8698 -2.1180 -5.2066 14 7 6.9737 -1.4870 -5.5188 15 6 6.9806 -2.0202 -6.8832 16 6 6.4771 -0.9672 -7.8366 17 1 6.1811 0.0020 -7.4633 18 6 6.3943 -1.2413 -9.1852 19 7 6.7542 -2.4218 -9.6398 20 14 5.7708 0.0641 -10.3670 21 1 6.6522 1.2571 -10.2969 22 1 5.7776 -0.4764 -11.7501 23 1 4.3860 0.4493 -9.9935 24 6 8.1006 -0.8235 -5.0211 25 6 9.2698 -1.5298 -4.7704 26 6 10.3818 -0.8711 -4.2838 27 6 10.3289 0.4885 -4.0368 28 6 9.1647 1.1937 -4.2804 29 6 8.0507 0.5418 -4.7720 30 6 2.0825 -0.8017 -1.2036 31 1 -0.3633 0.4798 0.9088 32 1 -0.3633 0.5474 -0.8699 33 1 -0.3634 -1.0269 -0.0390 34 1 1.4561 -1.6700 1.4093 35 1 2.1582 -0.1660 2.0876 36 1 6.7467 -1.6662 -2.7946 37 1 6.0334 -0.1037 -3.2621 38 1 7.9969 -2.3028 -7.1578 39 1 6.3336 -2.8960 -6.9344 40 1 6.6956 -2.6147 -10.5885 41 1 9.3103 -2.5925 -4.9589 42 1 11.2927 -1.4191 -4.0926 43 1 11.1987 1.0006 -3.6525 44 1 9.1264 2.2554 -4.0861 45 1 7.1415 1.0930 -4.9616 46 1 2.4209 -0.1260 -1.9890 47 1 1.3246 -1.4848 -1.5872 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885561541.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:05 Heat of formation + Delta-G solvation = -129.517039 kcal Electronic energy + Delta-G solvation = -30508.785275 eV Core-core repulsion = 26236.196369 eV Total energy + Delta-G solvation = -4272.588906 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.96868 -40.01183 -39.25101 -38.10121 -36.32696 -34.90595 -33.96024 -32.76548 -31.13834 -30.74824 -29.52457 -28.94195 -26.80993 -26.59223 -24.31015 -22.99175 -22.53200 -22.11460 -21.11699 -20.85786 -19.24781 -18.09279 -17.48846 -16.91734 -16.79004 -16.49756 -15.99847 -15.95378 -15.77225 -15.23502 -14.99233 -14.86779 -14.35253 -14.25232 -14.16775 -13.95632 -13.35440 -13.21463 -13.17013 -12.85526 -12.75630 -12.45433 -12.36538 -12.20627 -12.00535 -11.71140 -11.53226 -11.26260 -11.24160 -11.14729 -11.10705 -10.89985 -10.70518 -10.67243 -10.56501 -10.22070 -10.02549 -9.80948 -9.43748 -8.73557 -8.64362 -8.48067 -7.80106 -6.10206 -4.14900 1.49516 1.59893 2.06305 2.14602 3.06087 3.30085 3.33867 3.36774 3.49891 3.74082 3.96803 4.09700 4.35838 4.38898 4.40551 4.58568 4.73910 4.79763 4.88939 5.06059 5.11336 5.14158 5.16662 5.21597 5.24632 5.25284 5.31093 5.31748 5.36362 5.40953 5.63001 5.65514 5.68649 5.77109 5.82422 5.95684 6.21065 6.26375 6.36900 6.55327 6.68853 6.72431 6.88496 7.13416 7.25042 7.35995 7.66292 7.84496 8.11865 8.17609 8.69489 8.88668 9.49549 10.98277 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.009836 B = 0.003049 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2845.975147 B = 9182.245008 C =11046.416890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.129 4.129 3 H 0.089 0.911 4 C 0.049 3.951 5 O -0.349 6.349 6 C 0.092 3.908 7 H 0.112 0.888 8 C 0.458 3.542 9 O -0.489 6.489 10 O -0.327 6.327 11 C 0.052 3.948 12 C 0.515 3.485 13 O -0.502 6.502 14 N -0.555 5.555 15 C 0.251 3.749 16 C -0.528 4.528 17 H 0.058 0.942 18 C 0.064 3.936 19 N -0.894 5.894 20 Si 0.900 3.100 21 H -0.276 1.276 22 H -0.285 1.285 23 H -0.275 1.275 24 C 0.152 3.848 25 C -0.122 4.122 26 C -0.109 4.109 27 C -0.130 4.130 28 C -0.108 4.108 29 C -0.125 4.125 30 C -0.141 4.141 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.039 0.961 39 H 0.049 0.951 40 H 0.265 0.735 41 H 0.126 0.874 42 H 0.123 0.877 43 H 0.120 0.880 44 H 0.122 0.878 45 H 0.123 0.877 46 H 0.088 0.912 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.151 4.228 19.789 20.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.147 4.147 3 H 0.108 0.892 4 C -0.027 4.027 5 O -0.268 6.268 6 C 0.032 3.968 7 H 0.129 0.871 8 C 0.299 3.701 9 O -0.375 6.375 10 O -0.243 6.243 11 C -0.026 4.026 12 C 0.301 3.699 13 O -0.376 6.376 14 N -0.286 5.286 15 C 0.134 3.866 16 C -0.566 4.566 17 H 0.076 0.924 18 C -0.139 4.139 19 N -0.533 5.533 20 Si 0.727 3.273 21 H -0.202 1.202 22 H -0.211 1.211 23 H -0.201 1.201 24 C 0.061 3.939 25 C -0.142 4.142 26 C -0.128 4.128 27 C -0.149 4.149 28 C -0.127 4.127 29 C -0.145 4.145 30 C -0.179 4.179 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.117 0.883 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.057 0.943 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.144 0.856 42 H 0.141 0.859 43 H 0.138 0.862 44 H 0.140 0.860 45 H 0.141 0.859 46 H 0.106 0.894 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.242 3.973 19.593 20.437 hybrid contribution -0.154 0.842 -0.989 1.308 sum -4.397 4.816 18.604 19.713 Atomic orbital electron populations 1.21726 0.93257 1.02497 1.02474 1.22794 0.97092 1.00532 0.94305 0.89243 1.23777 0.83470 0.97978 0.97481 1.88989 1.29841 1.86297 1.21640 1.22140 0.90312 1.01360 0.82950 0.87055 1.23522 0.89143 0.76583 0.80895 1.90686 1.41317 1.37369 1.68153 1.86508 1.39906 1.73686 1.24195 1.22920 0.84901 1.02309 0.92439 1.19717 0.83811 0.80359 0.86053 1.90735 1.29818 1.42877 1.74146 1.45876 1.10956 1.55523 1.16197 1.19488 0.98448 0.95367 0.73285 1.21306 1.44137 0.99450 0.91740 0.92364 1.24901 0.95175 0.95717 0.98089 1.69906 1.47641 1.20940 1.14798 0.86532 0.79543 0.81521 0.79713 1.20178 1.21092 1.20088 1.17781 0.88441 0.91044 0.96680 1.21331 0.92858 1.00381 0.99619 1.20990 0.97825 0.94626 0.99316 1.21096 0.97922 0.94493 1.01360 1.20985 0.92809 0.99696 0.99169 1.21390 0.99512 0.93327 1.00224 1.23013 0.96308 0.99691 0.98847 0.92078 0.91827 0.92039 0.91320 0.88274 0.88537 0.88365 0.94305 0.93336 0.92530 0.85590 0.85921 0.86221 0.85976 0.85875 0.89366 0.88474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.79 9.19 37.16 0.34 -0.45 16 2 C -0.13 -0.97 3.72 -88.61 -0.33 -1.30 16 3 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 4 C 0.05 0.39 7.17 38.21 0.27 0.66 16 5 O -0.35 -4.22 10.74 -54.84 -0.59 -4.81 16 6 C 0.09 1.05 3.96 -27.31 -0.11 0.94 16 7 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 8 C 0.46 6.90 7.06 36.00 0.25 7.16 16 9 O -0.49 -8.57 16.28 -25.39 -0.41 -8.98 16 10 O -0.33 -5.47 9.76 -45.88 -0.45 -5.92 16 11 C 0.05 0.88 4.65 36.01 0.17 1.05 16 12 C 0.52 10.90 7.62 -10.98 -0.08 10.82 16 13 O -0.50 -12.56 16.14 -14.04 -0.23 -12.79 16 14 N -0.56 -11.91 2.50 -114.73 -0.29 -12.20 16 15 C 0.25 6.48 5.07 -5.19 -0.03 6.46 16 16 C -0.53 -14.84 9.39 -34.44 -0.32 -15.16 16 17 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 18 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 19 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 20 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 C 0.15 2.76 4.35 -83.69 -0.36 2.40 16 25 C -0.12 -1.94 9.72 -39.39 -0.38 -2.33 16 26 C -0.11 -1.44 10.04 -39.61 -0.40 -1.84 16 27 C -0.13 -1.63 10.04 -39.55 -0.40 -2.03 16 28 C -0.11 -1.46 10.04 -39.61 -0.40 -1.86 16 29 C -0.12 -2.04 8.55 -39.39 -0.34 -2.37 16 30 C -0.14 -1.31 6.22 -25.20 -0.16 -1.47 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.31 8.10 -51.93 -0.42 -0.11 16 34 H 0.07 0.42 8.05 -51.93 -0.42 0.00 16 35 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.10 1.52 8.03 -51.93 -0.42 1.10 16 37 H 0.10 1.56 7.13 -51.93 -0.37 1.19 16 38 H 0.04 1.02 7.89 -51.93 -0.41 0.61 16 39 H 0.05 1.38 7.50 -51.92 -0.39 0.99 16 40 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 41 H 0.13 1.93 8.06 -52.48 -0.42 1.51 16 42 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 43 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 44 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 45 H 0.12 2.00 8.03 -52.49 -0.42 1.58 16 46 H 0.09 0.93 7.69 -51.93 -0.40 0.53 16 47 H 0.10 0.75 7.83 -51.93 -0.41 0.34 16 LS Contribution 401.12 15.07 6.04 6.04 Total: -1.00 -34.79 401.12 -9.57 -44.36 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -7.00 Total: 0.67 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: -2.37 Total: 2.37 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 0.45 Total: -37.70 kcal Atomic # 8 Polarization: -30.82 SS G_CDS: -1.68 Total: -32.50 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.79 -9.57 -44.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885561541.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.153 kcal (2) G-P(sol) polarization free energy of solvation -34.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds