Wall clock time and date at job start Wed Apr 1 2020 05:27:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09002 * 110.81102 * 2 1
4 4 C 1.54998 * 110.90440 * 123.63340 * 2 1 3
5 5 O 1.44382 * 103.49187 * 155.22058 * 4 2 1
6 6 C 1.43749 * 106.97364 * 319.93392 * 5 4 2
7 7 H 1.08995 * 109.87671 * 266.94023 * 6 5 4
8 8 C 1.50693 * 109.87797 * 145.93656 * 6 5 4
9 9 O 1.20832 * 119.99877 * 356.45827 * 8 6 5
10 10 O 1.34228 * 120.00348 * 176.45125 * 8 6 5
11 11 C 1.45196 * 117.00251 * 180.02562 * 10 8 6
12 12 C 1.50704 * 109.46974 * 180.02562 * 11 10 8
13 13 O 1.21282 * 120.00023 * 5.35700 * 12 11 10
14 14 N 1.34781 * 119.99843 * 185.35864 * 12 11 10
15 15 C 1.46496 * 119.99652 * 174.87823 * 14 12 11
16 16 C 1.50702 * 109.47108 * 90.00241 * 15 14 12
17 17 H 1.07996 * 119.99854 * 359.97438 * 16 15 14
18 18 C 1.37875 * 119.99750 * 179.97438 * 16 15 14
19 19 N 1.31516 * 120.00820 * 0.02562 * 18 16 15
20 20 Si 1.86804 * 119.99686 * 180.02562 * 18 16 15
21 21 H 1.48493 * 109.47527 * 59.99845 * 20 18 16
22 22 H 1.48498 * 109.47123 * 180.02562 * 20 18 16
23 23 H 1.48508 * 109.47027 * 300.00048 * 20 18 16
24 24 C 1.39916 * 119.99986 * 354.60586 * 14 12 11
25 25 C 1.38880 * 120.07013 * 111.50936 * 24 14 12
26 26 C 1.38109 * 119.92818 * 179.76496 * 25 24 14
27 27 C 1.38285 * 120.06858 * 0.48498 * 26 25 24
28 28 C 1.38275 * 120.14435 * 359.77099 * 27 26 25
29 29 C 1.38114 * 120.07117 * 359.97438 * 28 27 26
30 30 C 1.54102 * 107.29117 * 26.51855 * 6 5 4
31 31 H 1.09002 * 109.46922 * 297.83038 * 1 2 3
32 32 H 1.09004 * 109.46599 * 57.81979 * 1 2 3
33 33 H 1.08996 * 109.47361 * 177.82463 * 1 2 3
34 34 H 1.08995 * 110.61980 * 36.71314 * 4 2 1
35 35 H 1.09002 * 110.61548 * 273.71702 * 4 2 1
36 36 H 1.09001 * 109.47310 * 60.00702 * 11 10 8
37 37 H 1.09003 * 109.47482 * 299.99913 * 11 10 8
38 38 H 1.09005 * 109.47404 * 210.00360 * 15 14 12
39 39 H 1.09008 * 109.47412 * 330.00109 * 15 14 12
40 40 H 0.96989 * 120.00655 * 179.97438 * 19 18 16
41 41 H 1.08004 * 120.03363 * 359.97438 * 25 24 14
42 42 H 1.08003 * 119.96556 * 180.25736 * 26 25 24
43 43 H 1.08003 * 119.92608 * 179.74532 * 27 26 25
44 44 H 1.08002 * 119.96729 * 179.97438 * 28 27 26
45 45 H 1.07998 * 120.03987 * 179.97438 * 29 28 27
46 46 H 1.08992 * 110.49272 * 116.64613 * 30 6 5
47 47 H 1.09001 * 110.48449 * 239.29271 * 30 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9173 1.0189 0.0000
4 6 2.0831 -0.8020 1.2056
5 8 3.3941 -1.2143 0.7630
6 6 3.2717 -1.5886 -0.6195
7 1 3.0851 -2.6596 -0.6984
8 6 4.5348 -1.2329 -1.3604
9 8 5.4279 -0.6536 -0.7885
10 8 4.6680 -1.5596 -2.6555
11 6 5.9117 -1.1861 -3.3050
12 6 5.8798 -1.6308 -4.7446
13 8 4.8698 -2.1180 -5.2066
14 7 6.9737 -1.4870 -5.5188
15 6 6.9806 -2.0202 -6.8832
16 6 6.4771 -0.9672 -7.8366
17 1 6.1811 0.0020 -7.4633
18 6 6.3943 -1.2413 -9.1852
19 7 6.7542 -2.4218 -9.6398
20 14 5.7708 0.0641 -10.3670
21 1 6.6522 1.2571 -10.2969
22 1 5.7776 -0.4764 -11.7501
23 1 4.3860 0.4493 -9.9935
24 6 8.1006 -0.8235 -5.0211
25 6 9.2698 -1.5298 -4.7704
26 6 10.3818 -0.8711 -4.2838
27 6 10.3289 0.4885 -4.0368
28 6 9.1647 1.1937 -4.2804
29 6 8.0507 0.5418 -4.7720
30 6 2.0825 -0.8017 -1.2036
31 1 -0.3633 0.4798 0.9088
32 1 -0.3633 0.5474 -0.8699
33 1 -0.3634 -1.0269 -0.0390
34 1 1.4561 -1.6700 1.4093
35 1 2.1582 -0.1660 2.0876
36 1 6.7467 -1.6662 -2.7946
37 1 6.0334 -0.1037 -3.2621
38 1 7.9969 -2.3028 -7.1578
39 1 6.3336 -2.8960 -6.9344
40 1 6.6956 -2.6147 -10.5885
41 1 9.3103 -2.5925 -4.9589
42 1 11.2927 -1.4191 -4.0926
43 1 11.1987 1.0006 -3.6525
44 1 9.1264 2.2554 -4.0861
45 1 7.1415 1.0930 -4.9616
46 1 2.4209 -0.1260 -1.9890
47 1 1.3246 -1.4848 -1.5872
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000885561541.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:27:04
Heat of formation + Delta-G solvation = -148.688522 kcal
Electronic energy + Delta-G solvation = -30509.616613 eV
Core-core repulsion = 26236.196369 eV
Total energy + Delta-G solvation = -4273.420244 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.161 amu
Computer time = 0.89 seconds
Orbital eigenvalues (eV)
-42.17046 -41.39322 -40.24581 -39.50524 -37.65402 -36.58381 -34.84721 -34.63551
-32.16792 -31.85328 -31.06377 -30.30237 -28.48260 -27.28387 -25.45064 -24.70190
-23.82369 -23.39232 -22.11609 -21.62591 -20.74644 -19.27346 -18.88005 -18.69304
-18.08790 -17.89758 -17.35982 -17.10580 -16.93415 -16.59293 -16.29186 -16.07921
-15.80921 -15.37895 -15.30552 -14.95768 -14.63889 -14.53023 -14.33533 -14.02611
-13.98286 -13.78795 -13.64766 -13.42740 -13.14081 -13.08810 -12.88071 -12.67488
-12.48323 -12.43158 -12.24577 -12.15449 -12.05753 -11.93454 -11.78152 -11.74639
-11.48440 -11.13991 -10.86938 -10.68257 -10.19562 -9.87874 -9.35210 -8.27096
-6.41465 0.28281 0.45443 0.87394 0.92160 1.33809 1.38593 1.40493
1.47373 2.09762 2.36770 2.79897 2.85548 3.03336 3.24377 3.29899
3.47237 3.66755 3.77988 3.82193 3.86643 4.03538 4.07510 4.12916
4.20688 4.28175 4.50609 4.55177 4.59757 4.63818 4.66364 4.70047
4.78375 4.84639 4.95137 5.02546 5.05349 5.07580 5.11338 5.19824
5.33289 5.34100 5.48977 5.58102 5.60915 5.62648 5.68789 5.96411
6.00363 6.40613 6.53247 6.64066 7.04638 7.28834 8.80545
Molecular weight = 347.16amu
Principal moments of inertia in cm(-1)
A = 0.009836 B = 0.003049 C = 0.002534
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2845.975147 B = 9182.245008 C =11046.416890
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.123 4.123
3 H 0.081 0.919
4 C 0.045 3.955
5 O -0.376 6.376
6 C 0.093 3.907
7 H 0.134 0.866
8 C 0.457 3.543
9 O -0.517 6.517
10 O -0.339 6.339
11 C 0.068 3.932
12 C 0.511 3.489
13 O -0.554 6.554
14 N -0.554 5.554
15 C 0.268 3.732
16 C -0.545 4.545
17 H 0.052 0.948
18 C 0.012 3.988
19 N -0.925 5.925
20 Si 0.967 3.033
21 H -0.263 1.263
22 H -0.275 1.275
23 H -0.275 1.275
24 C 0.113 3.887
25 C -0.136 4.136
26 C -0.103 4.103
27 C -0.117 4.117
28 C -0.104 4.104
29 C -0.139 4.139
30 C -0.141 4.141
31 H 0.074 0.926
32 H 0.060 0.940
33 H 0.070 0.930
34 H 0.091 0.909
35 H 0.113 0.887
36 H 0.111 0.889
37 H 0.111 0.889
38 H 0.028 0.972
39 H 0.009 0.991
40 H 0.269 0.731
41 H 0.120 0.880
42 H 0.156 0.844
43 H 0.161 0.839
44 H 0.153 0.847
45 H 0.114 0.886
46 H 0.070 0.930
47 H 0.116 0.884
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.583 6.101 21.350 22.492
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.142 4.142
3 H 0.099 0.901
4 C -0.030 4.030
5 O -0.296 6.296
6 C 0.034 3.966
7 H 0.151 0.849
8 C 0.300 3.700
9 O -0.404 6.404
10 O -0.255 6.255
11 C -0.009 4.009
12 C 0.298 3.702
13 O -0.431 6.431
14 N -0.283 5.283
15 C 0.149 3.851
16 C -0.583 4.583
17 H 0.070 0.930
18 C -0.187 4.187
19 N -0.565 5.565
20 Si 0.791 3.209
21 H -0.188 1.188
22 H -0.200 1.200
23 H -0.201 1.201
24 C 0.023 3.977
25 C -0.155 4.155
26 C -0.121 4.121
27 C -0.135 4.135
28 C -0.123 4.123
29 C -0.158 4.158
30 C -0.179 4.179
31 H 0.093 0.907
32 H 0.079 0.921
33 H 0.089 0.911
34 H 0.109 0.891
35 H 0.131 0.869
36 H 0.129 0.871
37 H 0.129 0.871
38 H 0.046 0.954
39 H 0.028 0.972
40 H 0.078 0.922
41 H 0.138 0.862
42 H 0.174 0.826
43 H 0.179 0.821
44 H 0.171 0.829
45 H 0.132 0.868
46 H 0.089 0.911
47 H 0.134 0.866
Dipole moment (debyes) X Y Z Total
from point charges -3.645 5.869 21.191 22.288
hybrid contribution -0.233 0.274 -1.384 1.430
sum -3.877 6.142 19.806 21.096
Atomic orbital electron populations
1.21711 0.91440 1.03290 1.03072 1.22774 0.98470 0.99702 0.93268
0.90093 1.24055 0.82078 0.99126 0.97768 1.88961 1.32409 1.86607
1.21582 1.22357 0.88710 1.02772 0.82734 0.84910 1.24382 0.90060
0.75533 0.79994 1.90657 1.42591 1.38797 1.68382 1.86523 1.39637
1.73997 1.25373 1.22664 0.85722 1.02871 0.89668 1.20390 0.82930
0.79265 0.87581 1.90690 1.31658 1.45324 1.75452 1.45657 1.12474
1.55370 1.14775 1.18928 0.96517 0.93833 0.75822 1.21557 1.44507
0.99574 0.92694 0.92986 1.25806 0.95133 0.97962 0.99825 1.70020
1.48341 1.22724 1.15376 0.85479 0.78879 0.79031 0.77535 1.18765
1.20013 1.20060 1.18054 0.88093 0.92043 0.99543 1.21443 0.93188
1.00434 1.00478 1.21386 0.97762 0.95348 0.97641 1.21605 0.98640
0.94122 0.99097 1.21364 0.91979 1.01205 0.97726 1.21437 1.00547
0.92556 1.01305 1.23081 0.95917 0.99826 0.99090 0.90739 0.92076
0.91078 0.89119 0.86941 0.87111 0.87110 0.95386 0.97247 0.92191
0.86163 0.82644 0.82149 0.82940 0.86812 0.91121 0.86595
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.23 9.19 71.98 0.66 -0.57 16
2 C -0.12 -1.69 3.72 -9.49 -0.04 -1.73 16
3 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16
4 C 0.04 0.62 7.17 72.67 0.52 1.14 16
5 O -0.38 -8.74 10.74 -130.23 -1.40 -10.14 16
6 C 0.09 2.09 3.96 30.22 0.12 2.20 16
7 H 0.13 2.38 8.14 -2.39 -0.02 2.36 16
8 C 0.46 13.97 7.06 71.23 0.50 14.47 16
9 O -0.52 -18.23 16.28 28.29 0.46 -17.77 16
10 O -0.34 -11.72 9.76 -45.06 -0.44 -12.16 16
11 C 0.07 2.39 4.65 71.24 0.33 2.72 16
12 C 0.51 22.94 7.62 87.66 0.67 23.61 16
13 O -0.55 -29.62 16.14 15.70 0.25 -29.37 16
14 N -0.55 -25.17 2.50 -635.29 -1.59 -26.76 16
15 C 0.27 14.77 5.07 85.63 0.43 15.20 16
16 C -0.54 -31.92 9.39 25.60 0.24 -31.68 16
17 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16
18 C 0.01 0.71 5.46 84.65 0.46 1.17 16
19 N -0.93 -55.89 13.29 21.45 0.28 -55.61 16
20 Si 0.97 45.17 29.54 68.60 2.03 47.20 16
21 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16
22 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16
23 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16
24 C 0.11 4.20 4.35 38.16 0.17 4.36 16
25 C -0.14 -4.32 9.72 22.39 0.22 -4.10 16
26 C -0.10 -2.44 10.04 22.25 0.22 -2.22 16
27 C -0.12 -2.46 10.04 22.29 0.22 -2.24 16
28 C -0.10 -2.54 10.04 22.25 0.22 -2.32 16
29 C -0.14 -4.50 8.55 22.39 0.19 -4.30 16
30 C -0.14 -2.54 6.22 31.59 0.20 -2.34 16
31 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16
32 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16
33 H 0.07 0.52 8.10 -2.39 -0.02 0.50 16
34 H 0.09 0.86 8.05 -2.39 -0.02 0.84 16
35 H 0.11 1.22 8.14 -2.39 -0.02 1.21 16
36 H 0.11 3.58 8.03 -2.39 -0.02 3.56 16
37 H 0.11 3.62 7.13 -2.39 -0.02 3.60 16
38 H 0.03 1.58 7.89 -2.38 -0.02 1.56 16
39 H 0.01 0.59 7.50 -2.38 -0.02 0.57 16
40 H 0.27 15.23 8.31 -92.72 -0.77 14.46 16
41 H 0.12 3.83 8.06 -2.91 -0.02 3.81 16
42 H 0.16 2.65 8.06 -2.91 -0.02 2.62 16
43 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16
44 H 0.15 2.76 8.06 -2.91 -0.02 2.73 16
45 H 0.11 3.79 8.03 -2.91 -0.02 3.76 16
46 H 0.07 1.52 7.69 -2.39 -0.02 1.50 16
47 H 0.12 1.62 7.83 -2.39 -0.02 1.60 16
Total: -1.00 -79.71 401.12 5.91 -73.80
By element:
Atomic # 1 Polarization: 16.46 SS G_CDS: 0.96 Total: 17.42 kcal
Atomic # 6 Polarization: 8.03 SS G_CDS: 5.35 Total: 13.38 kcal
Atomic # 7 Polarization: -81.06 SS G_CDS: -1.31 Total: -82.37 kcal
Atomic # 8 Polarization: -68.31 SS G_CDS: -1.12 Total: -69.43 kcal
Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal
Total: -79.71 5.91 -73.80 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000885561541.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -74.891 kcal
(2) G-P(sol) polarization free energy of solvation -79.707 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.598 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.909 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.798 kcal
(6) G-S(sol) free energy of system = (1) + (5) -148.689 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.89 seconds