Wall clock time and date at job start Wed Apr 1 2020 05:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.81102 * 2 1 4 4 C 1.54998 * 110.90440 * 123.63340 * 2 1 3 5 5 O 1.44382 * 103.49187 * 155.22058 * 4 2 1 6 6 C 1.43749 * 106.97364 * 319.93392 * 5 4 2 7 7 H 1.08995 * 109.87671 * 266.94023 * 6 5 4 8 8 C 1.50693 * 109.87797 * 145.93656 * 6 5 4 9 9 O 1.20832 * 119.99877 * 356.45827 * 8 6 5 10 10 O 1.34228 * 120.00348 * 176.45125 * 8 6 5 11 11 C 1.45196 * 117.00251 * 180.02562 * 10 8 6 12 12 C 1.50704 * 109.46974 * 180.02562 * 11 10 8 13 13 O 1.21282 * 120.00023 * 5.35700 * 12 11 10 14 14 N 1.34781 * 119.99843 * 185.35864 * 12 11 10 15 15 C 1.46496 * 119.99652 * 174.87823 * 14 12 11 16 16 C 1.50702 * 109.47108 * 90.00241 * 15 14 12 17 17 H 1.07996 * 119.99854 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99750 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00820 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99686 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47527 * 59.99845 * 20 18 16 22 22 H 1.48498 * 109.47123 * 180.02562 * 20 18 16 23 23 H 1.48508 * 109.47027 * 300.00048 * 20 18 16 24 24 C 1.39916 * 119.99986 * 354.60586 * 14 12 11 25 25 C 1.38880 * 120.07013 * 111.50936 * 24 14 12 26 26 C 1.38109 * 119.92818 * 179.76496 * 25 24 14 27 27 C 1.38285 * 120.06858 * 0.48498 * 26 25 24 28 28 C 1.38275 * 120.14435 * 359.77099 * 27 26 25 29 29 C 1.38114 * 120.07117 * 359.97438 * 28 27 26 30 30 C 1.54102 * 107.29117 * 26.51855 * 6 5 4 31 31 H 1.09002 * 109.46922 * 297.83038 * 1 2 3 32 32 H 1.09004 * 109.46599 * 57.81979 * 1 2 3 33 33 H 1.08996 * 109.47361 * 177.82463 * 1 2 3 34 34 H 1.08995 * 110.61980 * 36.71314 * 4 2 1 35 35 H 1.09002 * 110.61548 * 273.71702 * 4 2 1 36 36 H 1.09001 * 109.47310 * 60.00702 * 11 10 8 37 37 H 1.09003 * 109.47482 * 299.99913 * 11 10 8 38 38 H 1.09005 * 109.47404 * 210.00360 * 15 14 12 39 39 H 1.09008 * 109.47412 * 330.00109 * 15 14 12 40 40 H 0.96989 * 120.00655 * 179.97438 * 19 18 16 41 41 H 1.08004 * 120.03363 * 359.97438 * 25 24 14 42 42 H 1.08003 * 119.96556 * 180.25736 * 26 25 24 43 43 H 1.08003 * 119.92608 * 179.74532 * 27 26 25 44 44 H 1.08002 * 119.96729 * 179.97438 * 28 27 26 45 45 H 1.07998 * 120.03987 * 179.97438 * 29 28 27 46 46 H 1.08992 * 110.49272 * 116.64613 * 30 6 5 47 47 H 1.09001 * 110.48449 * 239.29271 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9173 1.0189 0.0000 4 6 2.0831 -0.8020 1.2056 5 8 3.3941 -1.2143 0.7630 6 6 3.2717 -1.5886 -0.6195 7 1 3.0851 -2.6596 -0.6984 8 6 4.5348 -1.2329 -1.3604 9 8 5.4279 -0.6536 -0.7885 10 8 4.6680 -1.5596 -2.6555 11 6 5.9117 -1.1861 -3.3050 12 6 5.8798 -1.6308 -4.7446 13 8 4.8698 -2.1180 -5.2066 14 7 6.9737 -1.4870 -5.5188 15 6 6.9806 -2.0202 -6.8832 16 6 6.4771 -0.9672 -7.8366 17 1 6.1811 0.0020 -7.4633 18 6 6.3943 -1.2413 -9.1852 19 7 6.7542 -2.4218 -9.6398 20 14 5.7708 0.0641 -10.3670 21 1 6.6522 1.2571 -10.2969 22 1 5.7776 -0.4764 -11.7501 23 1 4.3860 0.4493 -9.9935 24 6 8.1006 -0.8235 -5.0211 25 6 9.2698 -1.5298 -4.7704 26 6 10.3818 -0.8711 -4.2838 27 6 10.3289 0.4885 -4.0368 28 6 9.1647 1.1937 -4.2804 29 6 8.0507 0.5418 -4.7720 30 6 2.0825 -0.8017 -1.2036 31 1 -0.3633 0.4798 0.9088 32 1 -0.3633 0.5474 -0.8699 33 1 -0.3634 -1.0269 -0.0390 34 1 1.4561 -1.6700 1.4093 35 1 2.1582 -0.1660 2.0876 36 1 6.7467 -1.6662 -2.7946 37 1 6.0334 -0.1037 -3.2621 38 1 7.9969 -2.3028 -7.1578 39 1 6.3336 -2.8960 -6.9344 40 1 6.6956 -2.6147 -10.5885 41 1 9.3103 -2.5925 -4.9589 42 1 11.2927 -1.4191 -4.0926 43 1 11.1987 1.0006 -3.6525 44 1 9.1264 2.2554 -4.0861 45 1 7.1415 1.0930 -4.9616 46 1 2.4209 -0.1260 -1.9890 47 1 1.3246 -1.4848 -1.5872 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885561541.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:04 Heat of formation + Delta-G solvation = -148.688522 kcal Electronic energy + Delta-G solvation = -30509.616613 eV Core-core repulsion = 26236.196369 eV Total energy + Delta-G solvation = -4273.420244 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.17046 -41.39322 -40.24581 -39.50524 -37.65402 -36.58381 -34.84721 -34.63551 -32.16792 -31.85328 -31.06377 -30.30237 -28.48260 -27.28387 -25.45064 -24.70190 -23.82369 -23.39232 -22.11609 -21.62591 -20.74644 -19.27346 -18.88005 -18.69304 -18.08790 -17.89758 -17.35982 -17.10580 -16.93415 -16.59293 -16.29186 -16.07921 -15.80921 -15.37895 -15.30552 -14.95768 -14.63889 -14.53023 -14.33533 -14.02611 -13.98286 -13.78795 -13.64766 -13.42740 -13.14081 -13.08810 -12.88071 -12.67488 -12.48323 -12.43158 -12.24577 -12.15449 -12.05753 -11.93454 -11.78152 -11.74639 -11.48440 -11.13991 -10.86938 -10.68257 -10.19562 -9.87874 -9.35210 -8.27096 -6.41465 0.28281 0.45443 0.87394 0.92160 1.33809 1.38593 1.40493 1.47373 2.09762 2.36770 2.79897 2.85548 3.03336 3.24377 3.29899 3.47237 3.66755 3.77988 3.82193 3.86643 4.03538 4.07510 4.12916 4.20688 4.28175 4.50609 4.55177 4.59757 4.63818 4.66364 4.70047 4.78375 4.84639 4.95137 5.02546 5.05349 5.07580 5.11338 5.19824 5.33289 5.34100 5.48977 5.58102 5.60915 5.62648 5.68789 5.96411 6.00363 6.40613 6.53247 6.64066 7.04638 7.28834 8.80545 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.009836 B = 0.003049 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2845.975147 B = 9182.245008 C =11046.416890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.123 4.123 3 H 0.081 0.919 4 C 0.045 3.955 5 O -0.376 6.376 6 C 0.093 3.907 7 H 0.134 0.866 8 C 0.457 3.543 9 O -0.517 6.517 10 O -0.339 6.339 11 C 0.068 3.932 12 C 0.511 3.489 13 O -0.554 6.554 14 N -0.554 5.554 15 C 0.268 3.732 16 C -0.545 4.545 17 H 0.052 0.948 18 C 0.012 3.988 19 N -0.925 5.925 20 Si 0.967 3.033 21 H -0.263 1.263 22 H -0.275 1.275 23 H -0.275 1.275 24 C 0.113 3.887 25 C -0.136 4.136 26 C -0.103 4.103 27 C -0.117 4.117 28 C -0.104 4.104 29 C -0.139 4.139 30 C -0.141 4.141 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.028 0.972 39 H 0.009 0.991 40 H 0.269 0.731 41 H 0.120 0.880 42 H 0.156 0.844 43 H 0.161 0.839 44 H 0.153 0.847 45 H 0.114 0.886 46 H 0.070 0.930 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.583 6.101 21.350 22.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.142 4.142 3 H 0.099 0.901 4 C -0.030 4.030 5 O -0.296 6.296 6 C 0.034 3.966 7 H 0.151 0.849 8 C 0.300 3.700 9 O -0.404 6.404 10 O -0.255 6.255 11 C -0.009 4.009 12 C 0.298 3.702 13 O -0.431 6.431 14 N -0.283 5.283 15 C 0.149 3.851 16 C -0.583 4.583 17 H 0.070 0.930 18 C -0.187 4.187 19 N -0.565 5.565 20 Si 0.791 3.209 21 H -0.188 1.188 22 H -0.200 1.200 23 H -0.201 1.201 24 C 0.023 3.977 25 C -0.155 4.155 26 C -0.121 4.121 27 C -0.135 4.135 28 C -0.123 4.123 29 C -0.158 4.158 30 C -0.179 4.179 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.109 0.891 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.046 0.954 39 H 0.028 0.972 40 H 0.078 0.922 41 H 0.138 0.862 42 H 0.174 0.826 43 H 0.179 0.821 44 H 0.171 0.829 45 H 0.132 0.868 46 H 0.089 0.911 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -3.645 5.869 21.191 22.288 hybrid contribution -0.233 0.274 -1.384 1.430 sum -3.877 6.142 19.806 21.096 Atomic orbital electron populations 1.21711 0.91440 1.03290 1.03072 1.22774 0.98470 0.99702 0.93268 0.90093 1.24055 0.82078 0.99126 0.97768 1.88961 1.32409 1.86607 1.21582 1.22357 0.88710 1.02772 0.82734 0.84910 1.24382 0.90060 0.75533 0.79994 1.90657 1.42591 1.38797 1.68382 1.86523 1.39637 1.73997 1.25373 1.22664 0.85722 1.02871 0.89668 1.20390 0.82930 0.79265 0.87581 1.90690 1.31658 1.45324 1.75452 1.45657 1.12474 1.55370 1.14775 1.18928 0.96517 0.93833 0.75822 1.21557 1.44507 0.99574 0.92694 0.92986 1.25806 0.95133 0.97962 0.99825 1.70020 1.48341 1.22724 1.15376 0.85479 0.78879 0.79031 0.77535 1.18765 1.20013 1.20060 1.18054 0.88093 0.92043 0.99543 1.21443 0.93188 1.00434 1.00478 1.21386 0.97762 0.95348 0.97641 1.21605 0.98640 0.94122 0.99097 1.21364 0.91979 1.01205 0.97726 1.21437 1.00547 0.92556 1.01305 1.23081 0.95917 0.99826 0.99090 0.90739 0.92076 0.91078 0.89119 0.86941 0.87111 0.87110 0.95386 0.97247 0.92191 0.86163 0.82644 0.82149 0.82940 0.86812 0.91121 0.86595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.19 71.98 0.66 -0.57 16 2 C -0.12 -1.69 3.72 -9.49 -0.04 -1.73 16 3 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 4 C 0.04 0.62 7.17 72.67 0.52 1.14 16 5 O -0.38 -8.74 10.74 -130.23 -1.40 -10.14 16 6 C 0.09 2.09 3.96 30.22 0.12 2.20 16 7 H 0.13 2.38 8.14 -2.39 -0.02 2.36 16 8 C 0.46 13.97 7.06 71.23 0.50 14.47 16 9 O -0.52 -18.23 16.28 28.29 0.46 -17.77 16 10 O -0.34 -11.72 9.76 -45.06 -0.44 -12.16 16 11 C 0.07 2.39 4.65 71.24 0.33 2.72 16 12 C 0.51 22.94 7.62 87.66 0.67 23.61 16 13 O -0.55 -29.62 16.14 15.70 0.25 -29.37 16 14 N -0.55 -25.17 2.50 -635.29 -1.59 -26.76 16 15 C 0.27 14.77 5.07 85.63 0.43 15.20 16 16 C -0.54 -31.92 9.39 25.60 0.24 -31.68 16 17 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 18 C 0.01 0.71 5.46 84.65 0.46 1.17 16 19 N -0.93 -55.89 13.29 21.45 0.28 -55.61 16 20 Si 0.97 45.17 29.54 68.60 2.03 47.20 16 21 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 22 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 23 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 24 C 0.11 4.20 4.35 38.16 0.17 4.36 16 25 C -0.14 -4.32 9.72 22.39 0.22 -4.10 16 26 C -0.10 -2.44 10.04 22.25 0.22 -2.22 16 27 C -0.12 -2.46 10.04 22.29 0.22 -2.24 16 28 C -0.10 -2.54 10.04 22.25 0.22 -2.32 16 29 C -0.14 -4.50 8.55 22.39 0.19 -4.30 16 30 C -0.14 -2.54 6.22 31.59 0.20 -2.34 16 31 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 33 H 0.07 0.52 8.10 -2.39 -0.02 0.50 16 34 H 0.09 0.86 8.05 -2.39 -0.02 0.84 16 35 H 0.11 1.22 8.14 -2.39 -0.02 1.21 16 36 H 0.11 3.58 8.03 -2.39 -0.02 3.56 16 37 H 0.11 3.62 7.13 -2.39 -0.02 3.60 16 38 H 0.03 1.58 7.89 -2.38 -0.02 1.56 16 39 H 0.01 0.59 7.50 -2.38 -0.02 0.57 16 40 H 0.27 15.23 8.31 -92.72 -0.77 14.46 16 41 H 0.12 3.83 8.06 -2.91 -0.02 3.81 16 42 H 0.16 2.65 8.06 -2.91 -0.02 2.62 16 43 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16 44 H 0.15 2.76 8.06 -2.91 -0.02 2.73 16 45 H 0.11 3.79 8.03 -2.91 -0.02 3.76 16 46 H 0.07 1.52 7.69 -2.39 -0.02 1.50 16 47 H 0.12 1.62 7.83 -2.39 -0.02 1.60 16 Total: -1.00 -79.71 401.12 5.91 -73.80 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: 0.96 Total: 17.42 kcal Atomic # 6 Polarization: 8.03 SS G_CDS: 5.35 Total: 13.38 kcal Atomic # 7 Polarization: -81.06 SS G_CDS: -1.31 Total: -82.37 kcal Atomic # 8 Polarization: -68.31 SS G_CDS: -1.12 Total: -69.43 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -79.71 5.91 -73.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885561541.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.891 kcal (2) G-P(sol) polarization free energy of solvation -79.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds