Wall clock time and date at job start Wed Apr 1 2020 05:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 110.74670 * 2 1 4 4 C 1.54376 * 110.84591 * 123.47008 * 2 1 3 5 5 O 1.43243 * 107.58944 * 139.54969 * 4 2 1 6 6 C 1.43648 * 109.96723 * 1.70860 * 5 4 2 7 7 H 1.08998 * 110.30871 * 94.58739 * 6 5 4 8 8 C 1.50697 * 110.30891 * 216.65587 * 6 5 4 9 9 O 1.20827 * 119.99926 * 3.55047 * 8 6 5 10 10 O 1.34236 * 119.99951 * 183.54705 * 8 6 5 11 11 C 1.45193 * 116.99784 * 180.02562 * 10 8 6 12 12 C 1.50697 * 109.46826 * 179.97438 * 11 10 8 13 13 O 1.21286 * 120.00449 * 5.35660 * 12 11 10 14 14 N 1.34780 * 120.00056 * 185.35231 * 12 11 10 15 15 C 1.46504 * 120.00357 * 174.88766 * 14 12 11 16 16 C 1.50703 * 109.46810 * 89.99944 * 15 14 12 17 17 H 1.08005 * 120.00181 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99821 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00007 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99661 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47187 * 269.99944 * 20 18 16 22 22 H 1.48490 * 109.47290 * 30.00295 * 20 18 16 23 23 H 1.48504 * 109.46862 * 150.00977 * 20 18 16 24 24 C 1.39932 * 119.99944 * 354.88961 * 14 12 11 25 25 C 1.38868 * 120.07160 * 291.61688 * 24 14 12 26 26 C 1.38105 * 119.92825 * 179.67890 * 25 24 14 27 27 C 1.38287 * 120.07278 * 0.61406 * 26 25 24 28 28 C 1.38281 * 120.13632 * 359.67984 * 27 26 25 29 29 C 1.38114 * 120.07453 * 359.97438 * 28 27 26 30 30 C 1.54946 * 105.13900 * 335.57497 * 6 5 4 31 31 H 1.09003 * 109.47508 * 297.98381 * 1 2 3 32 32 H 1.09001 * 109.47125 * 57.98137 * 1 2 3 33 33 H 1.08999 * 109.47048 * 177.98345 * 1 2 3 34 34 H 1.08996 * 109.83261 * 20.03415 * 4 2 1 35 35 H 1.09004 * 109.90473 * 259.10268 * 4 2 1 36 36 H 1.09004 * 109.47149 * 60.00147 * 11 10 8 37 37 H 1.08998 * 109.47593 * 300.00069 * 11 10 8 38 38 H 1.08996 * 109.47028 * 330.00658 * 15 14 12 39 39 H 1.08989 * 109.47414 * 209.99999 * 15 14 12 40 40 H 0.96995 * 120.00074 * 179.97438 * 19 18 16 41 41 H 1.08003 * 120.03182 * 359.97350 * 25 24 14 42 42 H 1.08003 * 119.96977 * 180.33724 * 26 25 24 43 43 H 1.07996 * 119.93258 * 179.70737 * 27 26 25 44 44 H 1.08004 * 119.96552 * 180.02562 * 28 27 26 45 45 H 1.07995 * 120.03964 * 180.02562 * 29 28 27 46 46 H 1.08999 * 111.12548 * 154.36091 * 30 6 5 47 47 H 1.08996 * 111.12540 * 278.52587 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9161 1.0193 0.0000 4 6 2.0793 -0.7957 1.2035 5 8 3.2044 -1.5538 0.7439 6 6 3.4464 -1.2796 -0.6452 7 1 4.1947 -0.4942 -0.7510 8 6 3.8981 -2.5302 -1.3543 9 8 3.9458 -3.5795 -0.7572 10 8 4.2474 -2.4784 -2.6494 11 6 4.6718 -3.7217 -3.2678 12 6 5.0213 -3.4706 -4.7120 13 8 5.0162 -2.3393 -5.1494 14 7 5.3396 -4.5031 -5.5177 15 6 5.5699 -4.2737 -6.9462 16 6 7.0281 -3.9713 -7.1777 17 1 7.7146 -3.9524 -6.3442 18 6 7.4859 -3.7199 -8.4538 19 7 6.6500 -3.7435 -9.4688 20 14 9.2934 -3.3459 -8.7407 21 1 9.5180 -1.8814 -8.6391 22 1 10.1120 -4.0445 -7.7176 23 1 9.6869 -3.8141 -10.0940 24 6 5.4502 -5.7943 -4.9897 25 6 6.4890 -6.1047 -4.1221 26 6 6.5915 -7.3781 -3.5975 27 6 5.6683 -8.3472 -3.9454 28 6 4.6362 -8.0429 -4.8139 29 6 4.5240 -6.7693 -5.3364 30 6 2.0827 -0.8052 -1.2075 31 1 -0.3634 0.4822 0.9075 32 1 -0.3633 0.5449 -0.8713 33 1 -0.3633 -1.0270 -0.0362 34 1 1.3107 -1.4683 1.5840 35 1 2.3925 -0.1094 1.9903 36 1 3.8629 -4.4502 -3.2115 37 1 5.5460 -4.1082 -2.7440 38 1 4.9665 -3.4299 -7.2806 39 1 5.2903 -5.1654 -7.5071 40 1 6.9719 -3.5663 -10.3664 41 1 7.2133 -5.3497 -3.8540 42 1 7.3960 -7.6188 -2.9184 43 1 5.7533 -9.3435 -3.5375 44 1 3.9165 -8.8018 -5.0834 45 1 3.7175 -6.5322 -6.0143 46 1 2.2185 -0.1638 -2.0783 47 1 1.4386 -1.6524 -1.4426 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885561542.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:07 Heat of formation + Delta-G solvation = -129.724774 kcal Electronic energy + Delta-G solvation = -30446.326137 eV Core-core repulsion = 26173.728223 eV Total energy + Delta-G solvation = -4272.597914 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.94606 -40.01605 -39.28803 -38.10615 -36.33556 -34.90620 -33.99413 -32.76493 -31.16226 -30.75120 -29.52662 -28.96514 -26.85072 -26.61420 -24.34564 -22.98680 -22.52844 -22.11307 -21.31917 -20.54160 -19.23441 -18.14678 -17.57137 -16.99714 -16.73182 -16.41072 -16.37066 -15.97350 -15.54104 -15.39830 -15.04008 -14.59552 -14.48409 -14.24258 -14.02229 -13.78333 -13.47451 -13.29499 -13.18537 -12.87745 -12.81385 -12.59229 -12.33845 -12.18410 -12.03035 -11.65401 -11.53393 -11.41416 -11.26711 -11.19655 -11.10541 -10.88256 -10.70694 -10.68863 -10.51078 -10.21576 -9.91723 -9.79431 -9.43695 -8.73548 -8.64893 -8.48079 -7.79906 -6.10389 -4.14817 1.49374 1.59908 2.03871 2.13771 3.06027 3.29407 3.35134 3.37639 3.46922 3.71395 3.96245 3.99169 4.31498 4.39650 4.42090 4.67175 4.68320 4.74282 4.82666 4.99610 5.11604 5.14280 5.19990 5.21449 5.25057 5.26008 5.30723 5.31630 5.34286 5.47148 5.56607 5.63133 5.64016 5.77130 5.82711 5.95716 6.21140 6.27594 6.47030 6.55369 6.68891 6.72261 6.88356 7.13294 7.24731 7.36072 7.65979 7.84690 8.11822 8.17386 8.69409 8.89007 9.49713 10.98140 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.010690 B = 0.002885 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2618.716704 B = 9702.592997 C =11275.527122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.127 4.127 3 H 0.093 0.907 4 C 0.053 3.947 5 O -0.355 6.355 6 C 0.095 3.905 7 H 0.115 0.885 8 C 0.458 3.542 9 O -0.489 6.489 10 O -0.327 6.327 11 C 0.052 3.948 12 C 0.515 3.485 13 O -0.502 6.502 14 N -0.555 5.555 15 C 0.251 3.749 16 C -0.527 4.527 17 H 0.059 0.941 18 C 0.063 3.937 19 N -0.894 5.894 20 Si 0.900 3.100 21 H -0.278 1.278 22 H -0.274 1.274 23 H -0.285 1.285 24 C 0.152 3.848 25 C -0.125 4.125 26 C -0.108 4.108 27 C -0.130 4.130 28 C -0.109 4.109 29 C -0.122 4.122 30 C -0.140 4.140 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.049 0.951 39 H 0.039 0.961 40 H 0.264 0.736 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.123 0.877 45 H 0.126 0.874 46 H 0.104 0.896 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.641 0.416 18.294 21.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.145 4.145 3 H 0.111 0.889 4 C -0.024 4.024 5 O -0.274 6.274 6 C 0.036 3.964 7 H 0.133 0.867 8 C 0.299 3.701 9 O -0.375 6.375 10 O -0.242 6.242 11 C -0.026 4.026 12 C 0.301 3.699 13 O -0.376 6.376 14 N -0.285 5.285 15 C 0.134 3.866 16 C -0.565 4.565 17 H 0.077 0.923 18 C -0.139 4.139 19 N -0.533 5.533 20 Si 0.727 3.273 21 H -0.204 1.204 22 H -0.199 1.199 23 H -0.211 1.211 24 C 0.060 3.940 25 C -0.144 4.144 26 C -0.127 4.127 27 C -0.149 4.149 28 C -0.128 4.128 29 C -0.142 4.142 30 C -0.177 4.177 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.114 0.886 37 H 0.117 0.883 38 H 0.066 0.934 39 H 0.057 0.943 40 H 0.074 0.926 41 H 0.142 0.858 42 H 0.140 0.860 43 H 0.138 0.862 44 H 0.141 0.859 45 H 0.144 0.856 46 H 0.122 0.878 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.519 0.630 18.093 20.938 hybrid contribution 1.091 0.030 -0.420 1.169 sum -9.428 0.660 17.672 20.041 Atomic orbital electron populations 1.21735 0.93179 1.02593 1.02502 1.22751 0.97570 1.00234 0.93963 0.88892 1.23363 0.88260 0.94387 0.96369 1.88515 1.49488 1.67787 1.21656 1.22324 0.99504 0.92046 0.82559 0.86737 1.23496 0.74824 0.90978 0.80799 1.90687 1.48498 1.31704 1.66648 1.86509 1.76163 1.36859 1.24695 1.22919 1.02144 0.84533 0.92974 1.19713 0.78693 0.85468 0.86055 1.90736 1.50579 1.21011 1.75266 1.45881 1.67322 1.03660 1.11674 1.19492 0.97593 0.98153 0.71384 1.21345 0.93345 1.48535 0.93300 0.92303 1.24905 0.98210 0.95058 0.95753 1.69919 1.34692 1.49177 0.99513 0.86467 0.84614 0.78761 0.77441 1.20444 1.19868 1.21077 1.17787 0.94361 0.86210 0.95634 1.21396 0.96859 0.97397 0.98764 1.20992 0.99058 0.92803 0.99807 1.21098 0.95640 0.99174 0.98951 1.20987 0.98443 0.95948 0.97419 1.21322 0.98848 0.93309 1.00708 1.23342 0.93810 1.01293 0.99303 0.91995 0.91726 0.92091 0.90692 0.90599 0.88594 0.88295 0.93351 0.94297 0.92599 0.85831 0.85957 0.86221 0.85939 0.85604 0.87777 0.89522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.78 9.14 37.16 0.34 -0.44 16 2 C -0.13 -0.85 3.60 -88.68 -0.32 -1.17 16 3 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 4 C 0.05 0.42 7.40 37.88 0.28 0.71 16 5 O -0.36 -4.34 10.61 -54.61 -0.58 -4.92 16 6 C 0.09 1.08 3.97 -26.86 -0.11 0.97 16 7 H 0.12 1.10 8.14 -51.93 -0.42 0.68 16 8 C 0.46 6.88 7.30 36.00 0.26 7.14 16 9 O -0.49 -8.55 16.30 -25.32 -0.41 -8.96 16 10 O -0.33 -5.43 9.76 -45.90 -0.45 -5.88 16 11 C 0.05 0.88 4.64 36.00 0.17 1.04 16 12 C 0.52 10.87 7.62 -10.99 -0.08 10.78 16 13 O -0.50 -12.52 16.14 -14.05 -0.23 -12.75 16 14 N -0.56 -11.87 2.50 -114.74 -0.29 -12.16 16 15 C 0.25 6.46 5.07 -5.19 -0.03 6.43 16 16 C -0.53 -14.82 9.39 -34.44 -0.32 -15.14 16 17 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 18 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 19 N -0.89 -26.23 13.29 55.43 0.74 -25.49 16 20 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 C 0.15 2.75 4.36 -83.69 -0.36 2.38 16 25 C -0.12 -2.04 8.56 -39.40 -0.34 -2.37 16 26 C -0.11 -1.46 10.04 -39.61 -0.40 -1.86 16 27 C -0.13 -1.63 10.04 -39.55 -0.40 -2.03 16 28 C -0.11 -1.44 10.04 -39.61 -0.40 -1.83 16 29 C -0.12 -1.93 9.70 -39.39 -0.38 -2.31 16 30 C -0.14 -1.24 6.02 -24.48 -0.15 -1.39 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.36 8.12 -51.93 -0.42 -0.07 16 34 H 0.07 0.56 7.81 -51.93 -0.41 0.16 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.10 1.49 8.02 -51.93 -0.42 1.07 16 37 H 0.10 1.58 7.14 -51.93 -0.37 1.21 16 38 H 0.05 1.37 7.50 -51.93 -0.39 0.98 16 39 H 0.04 1.02 7.87 -51.93 -0.41 0.61 16 40 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 41 H 0.12 2.02 8.03 -52.48 -0.42 1.60 16 42 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 43 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 44 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 45 H 0.13 1.91 8.06 -52.49 -0.42 1.49 16 46 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.09 0.81 7.93 -51.93 -0.41 0.40 16 LS Contribution 401.43 15.07 6.05 6.05 Total: -1.00 -34.79 401.43 -9.54 -44.33 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -7.02 Total: 0.36 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: -2.33 Total: 2.60 kcal Atomic # 7 Polarization: -38.10 SS G_CDS: 0.45 Total: -37.65 kcal Atomic # 8 Polarization: -30.84 SS G_CDS: -1.67 Total: -32.51 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.79 -9.54 -44.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885561542.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.395 kcal (2) G-P(sol) polarization free energy of solvation -34.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds