Wall clock time and date at job start Wed Apr 1 2020 05:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 110.74670 * 2 1 4 4 C 1.54376 * 110.84591 * 123.47008 * 2 1 3 5 5 O 1.43243 * 107.58944 * 139.54969 * 4 2 1 6 6 C 1.43648 * 109.96723 * 1.70860 * 5 4 2 7 7 H 1.08998 * 110.30871 * 94.58739 * 6 5 4 8 8 C 1.50697 * 110.30891 * 216.65587 * 6 5 4 9 9 O 1.20827 * 119.99926 * 3.55047 * 8 6 5 10 10 O 1.34236 * 119.99951 * 183.54705 * 8 6 5 11 11 C 1.45193 * 116.99784 * 180.02562 * 10 8 6 12 12 C 1.50697 * 109.46826 * 179.97438 * 11 10 8 13 13 O 1.21286 * 120.00449 * 5.35660 * 12 11 10 14 14 N 1.34780 * 120.00056 * 185.35231 * 12 11 10 15 15 C 1.46504 * 120.00357 * 174.88766 * 14 12 11 16 16 C 1.50703 * 109.46810 * 89.99944 * 15 14 12 17 17 H 1.08005 * 120.00181 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99821 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00007 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99661 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47187 * 269.99944 * 20 18 16 22 22 H 1.48490 * 109.47290 * 30.00295 * 20 18 16 23 23 H 1.48504 * 109.46862 * 150.00977 * 20 18 16 24 24 C 1.39932 * 119.99944 * 354.88961 * 14 12 11 25 25 C 1.38868 * 120.07160 * 291.61688 * 24 14 12 26 26 C 1.38105 * 119.92825 * 179.67890 * 25 24 14 27 27 C 1.38287 * 120.07278 * 0.61406 * 26 25 24 28 28 C 1.38281 * 120.13632 * 359.67984 * 27 26 25 29 29 C 1.38114 * 120.07453 * 359.97438 * 28 27 26 30 30 C 1.54946 * 105.13900 * 335.57497 * 6 5 4 31 31 H 1.09003 * 109.47508 * 297.98381 * 1 2 3 32 32 H 1.09001 * 109.47125 * 57.98137 * 1 2 3 33 33 H 1.08999 * 109.47048 * 177.98345 * 1 2 3 34 34 H 1.08996 * 109.83261 * 20.03415 * 4 2 1 35 35 H 1.09004 * 109.90473 * 259.10268 * 4 2 1 36 36 H 1.09004 * 109.47149 * 60.00147 * 11 10 8 37 37 H 1.08998 * 109.47593 * 300.00069 * 11 10 8 38 38 H 1.08996 * 109.47028 * 330.00658 * 15 14 12 39 39 H 1.08989 * 109.47414 * 209.99999 * 15 14 12 40 40 H 0.96995 * 120.00074 * 179.97438 * 19 18 16 41 41 H 1.08003 * 120.03182 * 359.97350 * 25 24 14 42 42 H 1.08003 * 119.96977 * 180.33724 * 26 25 24 43 43 H 1.07996 * 119.93258 * 179.70737 * 27 26 25 44 44 H 1.08004 * 119.96552 * 180.02562 * 28 27 26 45 45 H 1.07995 * 120.03964 * 180.02562 * 29 28 27 46 46 H 1.08999 * 111.12548 * 154.36091 * 30 6 5 47 47 H 1.08996 * 111.12540 * 278.52587 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9161 1.0193 0.0000 4 6 2.0793 -0.7957 1.2035 5 8 3.2044 -1.5538 0.7439 6 6 3.4464 -1.2796 -0.6452 7 1 4.1947 -0.4942 -0.7510 8 6 3.8981 -2.5302 -1.3543 9 8 3.9458 -3.5795 -0.7572 10 8 4.2474 -2.4784 -2.6494 11 6 4.6718 -3.7217 -3.2678 12 6 5.0213 -3.4706 -4.7120 13 8 5.0162 -2.3393 -5.1494 14 7 5.3396 -4.5031 -5.5177 15 6 5.5699 -4.2737 -6.9462 16 6 7.0281 -3.9713 -7.1777 17 1 7.7146 -3.9524 -6.3442 18 6 7.4859 -3.7199 -8.4538 19 7 6.6500 -3.7435 -9.4688 20 14 9.2934 -3.3459 -8.7407 21 1 9.5180 -1.8814 -8.6391 22 1 10.1120 -4.0445 -7.7176 23 1 9.6869 -3.8141 -10.0940 24 6 5.4502 -5.7943 -4.9897 25 6 6.4890 -6.1047 -4.1221 26 6 6.5915 -7.3781 -3.5975 27 6 5.6683 -8.3472 -3.9454 28 6 4.6362 -8.0429 -4.8139 29 6 4.5240 -6.7693 -5.3364 30 6 2.0827 -0.8052 -1.2075 31 1 -0.3634 0.4822 0.9075 32 1 -0.3633 0.5449 -0.8713 33 1 -0.3633 -1.0270 -0.0362 34 1 1.3107 -1.4683 1.5840 35 1 2.3925 -0.1094 1.9903 36 1 3.8629 -4.4502 -3.2115 37 1 5.5460 -4.1082 -2.7440 38 1 4.9665 -3.4299 -7.2806 39 1 5.2903 -5.1654 -7.5071 40 1 6.9719 -3.5663 -10.3664 41 1 7.2133 -5.3497 -3.8540 42 1 7.3960 -7.6188 -2.9184 43 1 5.7533 -9.3435 -3.5375 44 1 3.9165 -8.8018 -5.0834 45 1 3.7175 -6.5322 -6.0143 46 1 2.2185 -0.1638 -2.0783 47 1 1.4386 -1.6524 -1.4426 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885561542.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:07 Heat of formation + Delta-G solvation = -148.844588 kcal Electronic energy + Delta-G solvation = -30447.155234 eV Core-core repulsion = 26173.728223 eV Total energy + Delta-G solvation = -4273.427011 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.14750 -41.38249 -40.27758 -39.50637 -37.65676 -36.57889 -34.84580 -34.65065 -32.17420 -31.85643 -31.06634 -30.31727 -28.49253 -27.33471 -25.49205 -24.70311 -23.81538 -23.38781 -22.21006 -21.39161 -20.72204 -19.26154 -18.95356 -18.69033 -18.12345 -17.64028 -17.60724 -17.23883 -17.03789 -16.52562 -16.38628 -16.13513 -15.62032 -15.49433 -15.04460 -14.90126 -14.58203 -14.47997 -14.33019 -14.14027 -13.93204 -13.88266 -13.64068 -13.43176 -13.33868 -13.07820 -12.93590 -12.69870 -12.48408 -12.28284 -12.23186 -12.15879 -12.07454 -12.05343 -11.76119 -11.74961 -11.50909 -11.12477 -10.72089 -10.68621 -10.19531 -9.87596 -9.34622 -8.27309 -6.41286 0.28475 0.45725 0.85876 0.92207 1.34000 1.37125 1.41164 1.48281 2.09325 2.36602 2.78890 2.81947 3.03279 3.21681 3.27723 3.43889 3.71578 3.80352 3.82853 3.92983 3.98465 4.04065 4.07931 4.18172 4.28506 4.50586 4.55489 4.59988 4.65014 4.66867 4.70525 4.78897 4.87729 4.95487 5.00941 5.03995 5.07749 5.11653 5.18076 5.33690 5.37078 5.49229 5.58412 5.61308 5.68958 5.71488 5.96623 6.00693 6.41190 6.53638 6.64449 7.05085 7.28999 8.80476 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.010690 B = 0.002885 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2618.716704 B = 9702.592997 C =11275.527122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.115 4.115 3 H 0.111 0.889 4 C 0.045 3.955 5 O -0.383 6.383 6 C 0.095 3.905 7 H 0.135 0.865 8 C 0.458 3.542 9 O -0.517 6.517 10 O -0.338 6.338 11 C 0.067 3.933 12 C 0.511 3.489 13 O -0.553 6.553 14 N -0.554 5.554 15 C 0.268 3.732 16 C -0.543 4.543 17 H 0.051 0.949 18 C 0.012 3.988 19 N -0.925 5.925 20 Si 0.966 3.034 21 H -0.277 1.277 22 H -0.265 1.265 23 H -0.273 1.273 24 C 0.113 3.887 25 C -0.139 4.139 26 C -0.105 4.105 27 C -0.117 4.117 28 C -0.103 4.103 29 C -0.135 4.135 30 C -0.140 4.140 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.053 0.947 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.010 0.990 39 H 0.029 0.971 40 H 0.269 0.731 41 H 0.113 0.887 42 H 0.152 0.848 43 H 0.161 0.839 44 H 0.156 0.844 45 H 0.121 0.879 46 H 0.111 0.889 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.331 -0.779 20.183 22.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.134 4.134 3 H 0.129 0.871 4 C -0.031 4.031 5 O -0.302 6.302 6 C 0.036 3.964 7 H 0.152 0.848 8 C 0.301 3.699 9 O -0.405 6.405 10 O -0.254 6.254 11 C -0.009 4.009 12 C 0.299 3.701 13 O -0.431 6.431 14 N -0.283 5.283 15 C 0.149 3.851 16 C -0.582 4.582 17 H 0.069 0.931 18 C -0.187 4.187 19 N -0.564 5.564 20 Si 0.790 3.210 21 H -0.203 1.203 22 H -0.190 1.190 23 H -0.197 1.197 24 C 0.023 3.977 25 C -0.159 4.159 26 C -0.123 4.123 27 C -0.135 4.135 28 C -0.121 4.121 29 C -0.155 4.155 30 C -0.178 4.178 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.114 0.886 36 H 0.130 0.870 37 H 0.128 0.872 38 H 0.028 0.972 39 H 0.047 0.953 40 H 0.078 0.922 41 H 0.131 0.869 42 H 0.170 0.830 43 H 0.178 0.822 44 H 0.174 0.826 45 H 0.139 0.861 46 H 0.130 0.870 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.223 -0.601 20.015 22.483 hybrid contribution 0.935 0.292 -0.943 1.360 sum -9.288 -0.310 19.072 21.216 Atomic orbital electron populations 1.21740 0.92171 1.02468 1.03500 1.22752 0.98294 1.00467 0.91872 0.87062 1.23620 0.87442 0.94717 0.97288 1.88485 1.51061 1.68972 1.21725 1.22548 1.01230 0.90229 0.82399 0.84786 1.24341 0.73649 0.92011 0.79868 1.90659 1.49876 1.33057 1.66900 1.86524 1.76385 1.36625 1.25869 1.22664 1.03126 0.85052 0.90097 1.20383 0.77538 0.84629 0.87592 1.90691 1.52918 1.22904 1.76597 1.45662 1.66884 1.05599 1.10128 1.18932 0.95967 0.95955 0.74274 1.21583 0.94244 1.48927 0.93427 0.93062 1.25796 1.02885 0.94628 0.95423 1.70026 1.36748 1.49665 0.99995 0.85433 0.79082 0.78495 0.77949 1.20280 1.18958 1.19740 1.18055 0.96674 0.85073 0.97924 1.21437 0.96412 0.98788 0.99251 1.21362 0.99975 0.91515 0.99457 1.21604 0.94017 1.00547 0.97285 1.21386 0.99141 0.95133 0.96466 1.21436 0.98597 0.94253 1.01187 1.23396 0.92354 1.01452 1.00572 0.90468 0.91304 0.92774 0.90431 0.88616 0.87047 0.87166 0.97190 0.95324 0.92203 0.86869 0.83001 0.82159 0.82619 0.86112 0.87015 0.90422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.14 71.98 0.66 -0.62 16 2 C -0.12 -1.33 3.60 -9.54 -0.03 -1.36 16 3 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 4 C 0.04 0.65 7.40 72.45 0.54 1.19 16 5 O -0.38 -9.05 10.61 -130.46 -1.38 -10.44 16 6 C 0.09 2.11 3.97 30.51 0.12 2.23 16 7 H 0.13 2.45 8.14 -2.39 -0.02 2.43 16 8 C 0.46 13.91 7.30 71.23 0.52 14.43 16 9 O -0.52 -18.20 16.30 28.24 0.46 -17.74 16 10 O -0.34 -11.57 9.76 -45.14 -0.44 -12.01 16 11 C 0.07 2.37 4.64 71.23 0.33 2.70 16 12 C 0.51 22.83 7.62 87.66 0.67 23.49 16 13 O -0.55 -29.45 16.14 15.69 0.25 -29.20 16 14 N -0.55 -25.06 2.50 -635.30 -1.59 -26.65 16 15 C 0.27 14.69 5.07 85.63 0.43 15.12 16 16 C -0.54 -31.83 9.39 25.60 0.24 -31.59 16 17 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 18 C 0.01 0.70 5.46 84.66 0.46 1.17 16 19 N -0.92 -55.76 13.29 21.45 0.28 -55.48 16 20 Si 0.97 45.32 29.54 68.60 2.03 47.34 16 21 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 22 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 23 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 24 C 0.11 4.18 4.36 38.15 0.17 4.35 16 25 C -0.14 -4.52 8.56 22.39 0.19 -4.33 16 26 C -0.10 -2.56 10.04 22.25 0.22 -2.34 16 27 C -0.12 -2.45 10.04 22.29 0.22 -2.23 16 28 C -0.10 -2.42 10.04 22.25 0.22 -2.19 16 29 C -0.14 -4.26 9.70 22.39 0.22 -4.04 16 30 C -0.14 -2.38 6.02 32.05 0.19 -2.19 16 31 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.07 0.58 8.14 -2.39 -0.02 0.57 16 33 H 0.05 0.57 8.12 -2.39 -0.02 0.55 16 34 H 0.08 1.06 7.81 -2.39 -0.02 1.05 16 35 H 0.10 1.01 8.14 -2.38 -0.02 0.99 16 36 H 0.11 3.54 8.02 -2.39 -0.02 3.52 16 37 H 0.11 3.61 7.14 -2.39 -0.02 3.59 16 38 H 0.01 0.62 7.50 -2.39 -0.02 0.60 16 39 H 0.03 1.60 7.87 -2.39 -0.02 1.58 16 40 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 41 H 0.11 3.80 8.03 -2.91 -0.02 3.78 16 42 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16 43 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 44 H 0.16 2.61 8.06 -2.91 -0.02 2.58 16 45 H 0.12 3.80 8.06 -2.91 -0.02 3.78 16 46 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 47 H 0.08 1.45 7.93 -2.39 -0.02 1.43 16 Total: -1.00 -79.45 401.43 5.95 -73.50 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 0.96 Total: 16.87 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: 5.38 Total: 13.79 kcal Atomic # 7 Polarization: -80.82 SS G_CDS: -1.31 Total: -82.12 kcal Atomic # 8 Polarization: -68.28 SS G_CDS: -1.11 Total: -69.39 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.34 kcal Total: -79.45 5.95 -73.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885561542.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.341 kcal (2) G-P(sol) polarization free energy of solvation -79.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds