Wall clock time and date at job start Wed Apr 1 2020 05:27:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.08999 * 110.74670 * 2 1
4 4 C 1.54376 * 110.84591 * 123.47008 * 2 1 3
5 5 O 1.43243 * 107.58944 * 139.54969 * 4 2 1
6 6 C 1.43648 * 109.96723 * 1.70860 * 5 4 2
7 7 H 1.08998 * 110.30871 * 94.58739 * 6 5 4
8 8 C 1.50697 * 110.30891 * 216.65587 * 6 5 4
9 9 O 1.20827 * 119.99926 * 3.55047 * 8 6 5
10 10 O 1.34236 * 119.99951 * 183.54705 * 8 6 5
11 11 C 1.45193 * 116.99784 * 180.02562 * 10 8 6
12 12 C 1.50697 * 109.46826 * 179.97438 * 11 10 8
13 13 O 1.21286 * 120.00449 * 5.35660 * 12 11 10
14 14 N 1.34780 * 120.00056 * 185.35231 * 12 11 10
15 15 C 1.46504 * 120.00357 * 174.88766 * 14 12 11
16 16 C 1.50703 * 109.46810 * 89.99944 * 15 14 12
17 17 H 1.08005 * 120.00181 * 0.02562 * 16 15 14
18 18 C 1.37881 * 119.99821 * 179.97438 * 16 15 14
19 19 N 1.31513 * 120.00007 * 0.02562 * 18 16 15
20 20 Si 1.86800 * 119.99661 * 180.02562 * 18 16 15
21 21 H 1.48504 * 109.47187 * 269.99944 * 20 18 16
22 22 H 1.48490 * 109.47290 * 30.00295 * 20 18 16
23 23 H 1.48504 * 109.46862 * 150.00977 * 20 18 16
24 24 C 1.39932 * 119.99944 * 354.88961 * 14 12 11
25 25 C 1.38868 * 120.07160 * 291.61688 * 24 14 12
26 26 C 1.38105 * 119.92825 * 179.67890 * 25 24 14
27 27 C 1.38287 * 120.07278 * 0.61406 * 26 25 24
28 28 C 1.38281 * 120.13632 * 359.67984 * 27 26 25
29 29 C 1.38114 * 120.07453 * 359.97438 * 28 27 26
30 30 C 1.54946 * 105.13900 * 335.57497 * 6 5 4
31 31 H 1.09003 * 109.47508 * 297.98381 * 1 2 3
32 32 H 1.09001 * 109.47125 * 57.98137 * 1 2 3
33 33 H 1.08999 * 109.47048 * 177.98345 * 1 2 3
34 34 H 1.08996 * 109.83261 * 20.03415 * 4 2 1
35 35 H 1.09004 * 109.90473 * 259.10268 * 4 2 1
36 36 H 1.09004 * 109.47149 * 60.00147 * 11 10 8
37 37 H 1.08998 * 109.47593 * 300.00069 * 11 10 8
38 38 H 1.08996 * 109.47028 * 330.00658 * 15 14 12
39 39 H 1.08989 * 109.47414 * 209.99999 * 15 14 12
40 40 H 0.96995 * 120.00074 * 179.97438 * 19 18 16
41 41 H 1.08003 * 120.03182 * 359.97350 * 25 24 14
42 42 H 1.08003 * 119.96977 * 180.33724 * 26 25 24
43 43 H 1.07996 * 119.93258 * 179.70737 * 27 26 25
44 44 H 1.08004 * 119.96552 * 180.02562 * 28 27 26
45 45 H 1.07995 * 120.03964 * 180.02562 * 29 28 27
46 46 H 1.08999 * 111.12548 * 154.36091 * 30 6 5
47 47 H 1.08996 * 111.12540 * 278.52587 * 30 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9161 1.0193 0.0000
4 6 2.0793 -0.7957 1.2035
5 8 3.2044 -1.5538 0.7439
6 6 3.4464 -1.2796 -0.6452
7 1 4.1947 -0.4942 -0.7510
8 6 3.8981 -2.5302 -1.3543
9 8 3.9458 -3.5795 -0.7572
10 8 4.2474 -2.4784 -2.6494
11 6 4.6718 -3.7217 -3.2678
12 6 5.0213 -3.4706 -4.7120
13 8 5.0162 -2.3393 -5.1494
14 7 5.3396 -4.5031 -5.5177
15 6 5.5699 -4.2737 -6.9462
16 6 7.0281 -3.9713 -7.1777
17 1 7.7146 -3.9524 -6.3442
18 6 7.4859 -3.7199 -8.4538
19 7 6.6500 -3.7435 -9.4688
20 14 9.2934 -3.3459 -8.7407
21 1 9.5180 -1.8814 -8.6391
22 1 10.1120 -4.0445 -7.7176
23 1 9.6869 -3.8141 -10.0940
24 6 5.4502 -5.7943 -4.9897
25 6 6.4890 -6.1047 -4.1221
26 6 6.5915 -7.3781 -3.5975
27 6 5.6683 -8.3472 -3.9454
28 6 4.6362 -8.0429 -4.8139
29 6 4.5240 -6.7693 -5.3364
30 6 2.0827 -0.8052 -1.2075
31 1 -0.3634 0.4822 0.9075
32 1 -0.3633 0.5449 -0.8713
33 1 -0.3633 -1.0270 -0.0362
34 1 1.3107 -1.4683 1.5840
35 1 2.3925 -0.1094 1.9903
36 1 3.8629 -4.4502 -3.2115
37 1 5.5460 -4.1082 -2.7440
38 1 4.9665 -3.4299 -7.2806
39 1 5.2903 -5.1654 -7.5071
40 1 6.9719 -3.5663 -10.3664
41 1 7.2133 -5.3497 -3.8540
42 1 7.3960 -7.6188 -2.9184
43 1 5.7533 -9.3435 -3.5375
44 1 3.9165 -8.8018 -5.0834
45 1 3.7175 -6.5322 -6.0143
46 1 2.2185 -0.1638 -2.0783
47 1 1.4386 -1.6524 -1.4426
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000885561542.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:27:07
Heat of formation + Delta-G solvation = -148.844588 kcal
Electronic energy + Delta-G solvation = -30447.155234 eV
Core-core repulsion = 26173.728223 eV
Total energy + Delta-G solvation = -4273.427011 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.161 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-42.14750 -41.38249 -40.27758 -39.50637 -37.65676 -36.57889 -34.84580 -34.65065
-32.17420 -31.85643 -31.06634 -30.31727 -28.49253 -27.33471 -25.49205 -24.70311
-23.81538 -23.38781 -22.21006 -21.39161 -20.72204 -19.26154 -18.95356 -18.69033
-18.12345 -17.64028 -17.60724 -17.23883 -17.03789 -16.52562 -16.38628 -16.13513
-15.62032 -15.49433 -15.04460 -14.90126 -14.58203 -14.47997 -14.33019 -14.14027
-13.93204 -13.88266 -13.64068 -13.43176 -13.33868 -13.07820 -12.93590 -12.69870
-12.48408 -12.28284 -12.23186 -12.15879 -12.07454 -12.05343 -11.76119 -11.74961
-11.50909 -11.12477 -10.72089 -10.68621 -10.19531 -9.87596 -9.34622 -8.27309
-6.41286 0.28475 0.45725 0.85876 0.92207 1.34000 1.37125 1.41164
1.48281 2.09325 2.36602 2.78890 2.81947 3.03279 3.21681 3.27723
3.43889 3.71578 3.80352 3.82853 3.92983 3.98465 4.04065 4.07931
4.18172 4.28506 4.50586 4.55489 4.59988 4.65014 4.66867 4.70525
4.78897 4.87729 4.95487 5.00941 5.03995 5.07749 5.11653 5.18076
5.33690 5.37078 5.49229 5.58412 5.61308 5.68958 5.71488 5.96623
6.00693 6.41190 6.53638 6.64449 7.05085 7.28999 8.80476
Molecular weight = 347.16amu
Principal moments of inertia in cm(-1)
A = 0.010690 B = 0.002885 C = 0.002483
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2618.716704 B = 9702.592997 C =11275.527122
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.115 4.115
3 H 0.111 0.889
4 C 0.045 3.955
5 O -0.383 6.383
6 C 0.095 3.905
7 H 0.135 0.865
8 C 0.458 3.542
9 O -0.517 6.517
10 O -0.338 6.338
11 C 0.067 3.933
12 C 0.511 3.489
13 O -0.553 6.553
14 N -0.554 5.554
15 C 0.268 3.732
16 C -0.543 4.543
17 H 0.051 0.949
18 C 0.012 3.988
19 N -0.925 5.925
20 Si 0.966 3.034
21 H -0.277 1.277
22 H -0.265 1.265
23 H -0.273 1.273
24 C 0.113 3.887
25 C -0.139 4.139
26 C -0.105 4.105
27 C -0.117 4.117
28 C -0.103 4.103
29 C -0.135 4.135
30 C -0.140 4.140
31 H 0.076 0.924
32 H 0.068 0.932
33 H 0.053 0.947
34 H 0.077 0.923
35 H 0.096 0.904
36 H 0.112 0.888
37 H 0.111 0.889
38 H 0.010 0.990
39 H 0.029 0.971
40 H 0.269 0.731
41 H 0.113 0.887
42 H 0.152 0.848
43 H 0.161 0.839
44 H 0.156 0.844
45 H 0.121 0.879
46 H 0.111 0.889
47 H 0.077 0.923
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.331 -0.779 20.183 22.687
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.134 4.134
3 H 0.129 0.871
4 C -0.031 4.031
5 O -0.302 6.302
6 C 0.036 3.964
7 H 0.152 0.848
8 C 0.301 3.699
9 O -0.405 6.405
10 O -0.254 6.254
11 C -0.009 4.009
12 C 0.299 3.701
13 O -0.431 6.431
14 N -0.283 5.283
15 C 0.149 3.851
16 C -0.582 4.582
17 H 0.069 0.931
18 C -0.187 4.187
19 N -0.564 5.564
20 Si 0.790 3.210
21 H -0.203 1.203
22 H -0.190 1.190
23 H -0.197 1.197
24 C 0.023 3.977
25 C -0.159 4.159
26 C -0.123 4.123
27 C -0.135 4.135
28 C -0.121 4.121
29 C -0.155 4.155
30 C -0.178 4.178
31 H 0.095 0.905
32 H 0.087 0.913
33 H 0.072 0.928
34 H 0.096 0.904
35 H 0.114 0.886
36 H 0.130 0.870
37 H 0.128 0.872
38 H 0.028 0.972
39 H 0.047 0.953
40 H 0.078 0.922
41 H 0.131 0.869
42 H 0.170 0.830
43 H 0.178 0.822
44 H 0.174 0.826
45 H 0.139 0.861
46 H 0.130 0.870
47 H 0.096 0.904
Dipole moment (debyes) X Y Z Total
from point charges -10.223 -0.601 20.015 22.483
hybrid contribution 0.935 0.292 -0.943 1.360
sum -9.288 -0.310 19.072 21.216
Atomic orbital electron populations
1.21740 0.92171 1.02468 1.03500 1.22752 0.98294 1.00467 0.91872
0.87062 1.23620 0.87442 0.94717 0.97288 1.88485 1.51061 1.68972
1.21725 1.22548 1.01230 0.90229 0.82399 0.84786 1.24341 0.73649
0.92011 0.79868 1.90659 1.49876 1.33057 1.66900 1.86524 1.76385
1.36625 1.25869 1.22664 1.03126 0.85052 0.90097 1.20383 0.77538
0.84629 0.87592 1.90691 1.52918 1.22904 1.76597 1.45662 1.66884
1.05599 1.10128 1.18932 0.95967 0.95955 0.74274 1.21583 0.94244
1.48927 0.93427 0.93062 1.25796 1.02885 0.94628 0.95423 1.70026
1.36748 1.49665 0.99995 0.85433 0.79082 0.78495 0.77949 1.20280
1.18958 1.19740 1.18055 0.96674 0.85073 0.97924 1.21437 0.96412
0.98788 0.99251 1.21362 0.99975 0.91515 0.99457 1.21604 0.94017
1.00547 0.97285 1.21386 0.99141 0.95133 0.96466 1.21436 0.98597
0.94253 1.01187 1.23396 0.92354 1.01452 1.00572 0.90468 0.91304
0.92774 0.90431 0.88616 0.87047 0.87166 0.97190 0.95324 0.92203
0.86869 0.83001 0.82159 0.82619 0.86112 0.87015 0.90422
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.28 9.14 71.98 0.66 -0.62 16
2 C -0.12 -1.33 3.60 -9.54 -0.03 -1.36 16
3 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16
4 C 0.04 0.65 7.40 72.45 0.54 1.19 16
5 O -0.38 -9.05 10.61 -130.46 -1.38 -10.44 16
6 C 0.09 2.11 3.97 30.51 0.12 2.23 16
7 H 0.13 2.45 8.14 -2.39 -0.02 2.43 16
8 C 0.46 13.91 7.30 71.23 0.52 14.43 16
9 O -0.52 -18.20 16.30 28.24 0.46 -17.74 16
10 O -0.34 -11.57 9.76 -45.14 -0.44 -12.01 16
11 C 0.07 2.37 4.64 71.23 0.33 2.70 16
12 C 0.51 22.83 7.62 87.66 0.67 23.49 16
13 O -0.55 -29.45 16.14 15.69 0.25 -29.20 16
14 N -0.55 -25.06 2.50 -635.30 -1.59 -26.65 16
15 C 0.27 14.69 5.07 85.63 0.43 15.12 16
16 C -0.54 -31.83 9.39 25.60 0.24 -31.59 16
17 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16
18 C 0.01 0.70 5.46 84.66 0.46 1.17 16
19 N -0.92 -55.76 13.29 21.45 0.28 -55.48 16
20 Si 0.97 45.32 29.54 68.60 2.03 47.34 16
21 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16
22 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16
23 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16
24 C 0.11 4.18 4.36 38.15 0.17 4.35 16
25 C -0.14 -4.52 8.56 22.39 0.19 -4.33 16
26 C -0.10 -2.56 10.04 22.25 0.22 -2.34 16
27 C -0.12 -2.45 10.04 22.29 0.22 -2.23 16
28 C -0.10 -2.42 10.04 22.25 0.22 -2.19 16
29 C -0.14 -4.26 9.70 22.39 0.22 -4.04 16
30 C -0.14 -2.38 6.02 32.05 0.19 -2.19 16
31 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16
32 H 0.07 0.58 8.14 -2.39 -0.02 0.57 16
33 H 0.05 0.57 8.12 -2.39 -0.02 0.55 16
34 H 0.08 1.06 7.81 -2.39 -0.02 1.05 16
35 H 0.10 1.01 8.14 -2.38 -0.02 0.99 16
36 H 0.11 3.54 8.02 -2.39 -0.02 3.52 16
37 H 0.11 3.61 7.14 -2.39 -0.02 3.59 16
38 H 0.01 0.62 7.50 -2.39 -0.02 0.60 16
39 H 0.03 1.60 7.87 -2.39 -0.02 1.58 16
40 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16
41 H 0.11 3.80 8.03 -2.91 -0.02 3.78 16
42 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16
43 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16
44 H 0.16 2.61 8.06 -2.91 -0.02 2.58 16
45 H 0.12 3.80 8.06 -2.91 -0.02 3.78 16
46 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16
47 H 0.08 1.45 7.93 -2.39 -0.02 1.43 16
Total: -1.00 -79.45 401.43 5.95 -73.50
By element:
Atomic # 1 Polarization: 15.91 SS G_CDS: 0.96 Total: 16.87 kcal
Atomic # 6 Polarization: 8.42 SS G_CDS: 5.38 Total: 13.79 kcal
Atomic # 7 Polarization: -80.82 SS G_CDS: -1.31 Total: -82.12 kcal
Atomic # 8 Polarization: -68.28 SS G_CDS: -1.11 Total: -69.39 kcal
Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.34 kcal
Total: -79.45 5.95 -73.50 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000885561542.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -75.341 kcal
(2) G-P(sol) polarization free energy of solvation -79.452 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.793 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.949 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.503 kcal
(6) G-S(sol) free energy of system = (1) + (5) -148.845 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds