Wall clock time and date at job start Wed Apr 1 2020 05:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 110.99002 * 2 1 4 4 C 1.54944 * 111.12661 * 235.80325 * 2 1 3 5 5 O 1.43647 * 105.13786 * 205.63455 * 4 2 1 6 6 C 1.43231 * 109.96926 * 24.42621 * 5 4 2 7 7 H 1.09000 * 109.83022 * 238.67947 * 6 5 4 8 8 C 1.50705 * 109.82660 * 117.80437 * 6 5 4 9 9 O 1.20817 * 120.00494 * 356.45016 * 8 6 5 10 10 O 1.34227 * 119.99689 * 176.45187 * 8 6 5 11 11 C 1.45206 * 117.00114 * 179.97438 * 10 8 6 12 12 C 1.50699 * 109.46973 * 180.02562 * 11 10 8 13 13 O 1.21284 * 120.00343 * 5.12936 * 12 11 10 14 14 N 1.34774 * 119.99598 * 185.12642 * 12 11 10 15 15 C 1.46507 * 120.00197 * 185.22050 * 14 12 11 16 16 C 1.50699 * 109.47196 * 89.99855 * 15 14 12 17 17 H 1.08004 * 119.99772 * 0.02562 * 16 15 14 18 18 C 1.37874 * 119.99992 * 180.02562 * 16 15 14 19 19 N 1.31524 * 119.99782 * 180.02562 * 18 16 15 20 20 Si 1.86792 * 120.00059 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47041 * 90.00111 * 20 18 16 22 22 H 1.48496 * 109.47205 * 209.99780 * 20 18 16 23 23 H 1.48504 * 109.47305 * 330.00104 * 20 18 16 24 24 C 1.39923 * 120.00208 * 5.22140 * 14 12 11 25 25 C 1.38878 * 120.07227 * 292.47397 * 24 14 12 26 26 C 1.38108 * 119.93041 * 179.74778 * 25 24 14 27 27 C 1.38284 * 120.07186 * 0.52854 * 26 25 24 28 28 C 1.38279 * 120.14000 * 359.74500 * 27 26 25 29 29 C 1.38114 * 120.07211 * 359.97438 * 28 27 26 30 30 C 1.54375 * 107.59050 * 358.29012 * 6 5 4 31 31 H 1.08999 * 109.46745 * 182.74525 * 1 2 3 32 32 H 1.08994 * 109.47090 * 302.74278 * 1 2 3 33 33 H 1.08998 * 109.47189 * 62.74307 * 1 2 3 34 34 H 1.09005 * 110.31124 * 86.71916 * 4 2 1 35 35 H 1.08998 * 110.31088 * 324.55095 * 4 2 1 36 36 H 1.09004 * 109.46791 * 299.99988 * 11 10 8 37 37 H 1.09001 * 109.46865 * 59.99959 * 11 10 8 38 38 H 1.08998 * 109.47178 * 210.00070 * 15 14 12 39 39 H 1.08994 * 109.46444 * 330.00196 * 15 14 12 40 40 H 0.96999 * 119.99371 * 180.02562 * 19 18 16 41 41 H 1.08005 * 120.02730 * 0.02562 * 25 24 14 42 42 H 1.08001 * 119.96385 * 180.27666 * 26 25 24 43 43 H 1.07994 * 119.92857 * 179.76938 * 27 26 25 44 44 H 1.07999 * 119.96803 * 179.97438 * 28 27 26 45 45 H 1.07998 * 120.03750 * 180.02562 * 29 28 27 46 46 H 1.08999 * 110.85009 * 96.83213 * 30 6 5 47 47 H 1.08997 * 110.84679 * 220.45281 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9205 1.0177 0.0000 4 6 2.0885 -0.8123 -1.1954 5 8 3.3898 -1.2519 -0.7750 6 6 3.4510 -1.3013 0.6552 7 1 4.2476 -0.6496 1.0139 8 6 3.7057 -2.7162 1.1073 9 8 3.7602 -3.6093 0.2956 10 8 3.8721 -2.9840 2.4120 11 6 4.1132 -4.3692 2.7751 12 6 4.2733 -4.4760 4.2698 13 8 4.1004 -3.5006 4.9696 14 7 4.6087 -5.6556 4.8288 15 6 4.6528 -5.7889 6.2872 16 6 3.3005 -6.2205 6.7933 17 1 2.4895 -6.3799 6.0981 18 6 3.0987 -6.4117 8.1437 19 7 1.9186 -6.7889 8.5853 20 14 4.5012 -6.1352 9.3460 21 1 4.4941 -4.7207 9.7980 22 1 4.3317 -7.0303 10.5187 23 1 5.7929 -6.4347 8.6772 24 6 4.9148 -6.7530 4.0165 25 6 3.9243 -7.3442 3.2431 26 6 4.2308 -8.4239 2.4384 27 6 5.5200 -8.9234 2.4105 28 6 6.5073 -8.3406 3.1836 29 6 6.2086 -7.2570 3.9861 30 6 2.0898 -0.8152 1.1975 31 1 -0.3633 -1.0265 0.0492 32 1 -0.3633 0.5558 0.8643 33 1 -0.3633 0.4706 -0.9135 34 1 2.1703 -0.1784 -2.0784 35 1 1.4481 -1.6697 -1.4024 36 1 3.2692 -4.9806 2.4558 37 1 5.0218 -4.7201 2.2859 38 1 5.3985 -6.5351 6.5614 39 1 4.9179 -4.8297 6.7317 40 1 1.7766 -6.9230 9.5354 41 1 2.9163 -6.9570 3.2677 42 1 3.4619 -8.8812 1.8334 43 1 5.7563 -9.7701 1.7832 44 1 7.5131 -8.7332 3.1600 45 1 6.9802 -6.8020 4.5894 46 1 1.4406 -1.6596 1.4292 47 1 2.2256 -0.1777 2.0711 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885561543.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:10 Heat of formation + Delta-G solvation = -126.279141 kcal Electronic energy + Delta-G solvation = -30608.952703 eV Core-core repulsion = 26336.504202 eV Total energy + Delta-G solvation = -4272.448500 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.00139 -40.10964 -39.25119 -38.17435 -36.33888 -35.02181 -33.97322 -32.70747 -31.19392 -30.80993 -29.85447 -29.01703 -27.15910 -26.76234 -24.30781 -22.74727 -22.57915 -22.03271 -21.25503 -20.59374 -19.27123 -18.14316 -17.60537 -17.08715 -16.98079 -16.53067 -16.37227 -16.07228 -15.79371 -15.47072 -15.10075 -14.47138 -14.34982 -14.12250 -14.08175 -13.87911 -13.50745 -13.32989 -13.24979 -12.94797 -12.67937 -12.51439 -12.44799 -12.39247 -12.02452 -11.87534 -11.67587 -11.42798 -11.39983 -11.21043 -11.09843 -10.92203 -10.70433 -10.68894 -10.62305 -10.28033 -9.89923 -9.65310 -9.56474 -8.78502 -8.73004 -8.63880 -7.85603 -6.15554 -4.15621 1.44148 1.55417 2.06505 2.18734 2.97093 3.24647 3.30095 3.31971 3.41807 3.61603 3.91967 3.99643 4.33305 4.33928 4.41504 4.61731 4.69180 4.72717 4.90683 5.03181 5.05811 5.10564 5.16532 5.17975 5.20920 5.21934 5.28912 5.35999 5.37693 5.47805 5.58380 5.59366 5.69261 5.72359 5.86494 5.89088 6.16427 6.27181 6.44927 6.47962 6.58078 6.64455 6.65342 6.81245 6.96658 7.18090 7.48686 7.65481 7.99676 8.35327 8.62211 8.86039 9.42836 10.97496 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.010289 B = 0.003098 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2720.677698 B = 9035.279700 C =10808.572902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.127 4.127 3 H 0.094 0.906 4 C 0.050 3.950 5 O -0.350 6.350 6 C 0.096 3.904 7 H 0.124 0.876 8 C 0.445 3.555 9 O -0.492 6.492 10 O -0.329 6.329 11 C 0.052 3.948 12 C 0.520 3.480 13 O -0.505 6.505 14 N -0.550 5.550 15 C 0.219 3.781 16 C -0.533 4.533 17 H 0.076 0.924 18 C 0.076 3.924 19 N -0.893 5.893 20 Si 0.875 3.125 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.265 1.265 24 C 0.150 3.850 25 C -0.121 4.121 26 C -0.106 4.106 27 C -0.129 4.129 28 C -0.109 4.109 29 C -0.124 4.124 30 C -0.140 4.140 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.094 0.906 35 H 0.066 0.934 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.036 0.964 39 H 0.044 0.956 40 H 0.266 0.734 41 H 0.125 0.875 42 H 0.124 0.876 43 H 0.121 0.879 44 H 0.123 0.877 45 H 0.125 0.875 46 H 0.086 0.914 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.274 7.617 -18.583 20.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.146 4.146 3 H 0.112 0.888 4 C -0.027 4.027 5 O -0.269 6.269 6 C 0.037 3.963 7 H 0.142 0.858 8 C 0.286 3.714 9 O -0.378 6.378 10 O -0.244 6.244 11 C -0.026 4.026 12 C 0.307 3.693 13 O -0.379 6.379 14 N -0.279 5.279 15 C 0.101 3.899 16 C -0.571 4.571 17 H 0.094 0.906 18 C -0.127 4.127 19 N -0.531 5.531 20 Si 0.701 3.299 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.190 1.190 24 C 0.058 3.942 25 C -0.141 4.141 26 C -0.124 4.124 27 C -0.147 4.147 28 C -0.128 4.128 29 C -0.144 4.144 30 C -0.177 4.177 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.112 0.888 35 H 0.084 0.916 36 H 0.119 0.881 37 H 0.114 0.886 38 H 0.054 0.946 39 H 0.062 0.938 40 H 0.076 0.924 41 H 0.143 0.857 42 H 0.142 0.858 43 H 0.139 0.861 44 H 0.141 0.859 45 H 0.143 0.857 46 H 0.105 0.895 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.252 7.792 -18.342 20.192 hybrid contribution 0.386 -0.323 0.915 1.044 sum 3.638 7.469 -17.428 19.306 Atomic orbital electron populations 1.21682 0.93120 1.02703 1.02508 1.22914 0.97419 1.00154 0.94078 0.88816 1.23635 0.83884 0.97744 0.97391 1.88531 1.32481 1.88127 1.17730 1.22195 1.01302 0.89722 0.83109 0.85825 1.24199 0.73691 0.92775 0.80738 1.90675 1.45346 1.47592 1.54199 1.86524 1.81474 1.30012 1.26405 1.22906 1.04050 0.80650 0.94953 1.19718 0.77920 0.83427 0.88285 1.90718 1.48083 1.35759 1.63345 1.45488 1.66712 1.07438 1.08309 1.19866 0.98784 0.98034 0.73263 1.21236 0.95616 1.46810 0.93481 0.90586 1.24809 0.95665 0.94298 0.97954 1.69888 1.21979 1.46458 1.14809 0.86872 0.82919 0.78866 0.81227 1.19714 1.20888 1.18997 1.17756 0.92679 0.90462 0.93308 1.21409 0.98740 0.96377 0.97554 1.21012 0.96731 0.96041 0.98665 1.21114 0.93364 1.00240 0.99989 1.20975 0.99385 0.95817 0.96621 1.21271 0.95478 0.97777 0.99836 1.23194 0.93723 1.01279 0.99543 0.92063 0.91676 0.91973 0.88823 0.91583 0.88120 0.88570 0.94584 0.93788 0.92415 0.85670 0.85806 0.86122 0.85884 0.85708 0.89520 0.87872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 9.30 37.16 0.35 -0.52 16 2 C -0.13 -0.90 3.69 -88.37 -0.33 -1.22 16 3 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 4 C 0.05 0.42 7.26 38.18 0.28 0.70 16 5 O -0.35 -4.19 10.56 -54.93 -0.58 -4.77 16 6 C 0.10 1.08 4.06 -27.16 -0.11 0.97 16 7 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16 8 C 0.44 6.61 7.14 36.01 0.26 6.87 16 9 O -0.49 -8.49 16.27 -25.40 -0.41 -8.90 16 10 O -0.33 -5.42 9.76 -45.88 -0.45 -5.87 16 11 C 0.05 0.87 4.46 36.01 0.16 1.03 16 12 C 0.52 10.81 7.65 -10.99 -0.08 10.73 16 13 O -0.51 -12.26 16.06 -14.05 -0.23 -12.49 16 14 N -0.55 -11.52 2.51 -114.73 -0.29 -11.80 16 15 C 0.22 5.31 4.22 -5.19 -0.02 5.29 16 16 C -0.53 -15.12 9.94 -34.44 -0.34 -15.46 16 17 H 0.08 2.35 8.06 -52.48 -0.42 1.93 16 18 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 19 N -0.89 -27.18 13.96 55.43 0.77 -26.41 16 20 Si 0.87 21.23 27.47 -169.99 -4.67 16.56 16 21 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.27 -6.06 6.54 56.52 0.37 -5.69 16 24 C 0.15 2.66 4.43 -83.69 -0.37 2.29 16 25 C -0.12 -1.97 8.45 -39.39 -0.33 -2.30 16 26 C -0.11 -1.43 10.04 -39.61 -0.40 -1.82 16 27 C -0.13 -1.58 10.04 -39.55 -0.40 -1.98 16 28 C -0.11 -1.40 10.04 -39.61 -0.40 -1.79 16 29 C -0.12 -1.90 9.66 -39.39 -0.38 -2.28 16 30 C -0.14 -1.28 6.01 -24.79 -0.15 -1.42 16 31 H 0.06 0.41 8.10 -51.93 -0.42 -0.01 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.58 8.03 -51.93 -0.42 0.16 16 36 H 0.10 1.61 6.88 -51.93 -0.36 1.25 16 37 H 0.10 1.49 7.86 -51.93 -0.41 1.08 16 38 H 0.04 0.84 6.90 -51.93 -0.36 0.48 16 39 H 0.04 1.11 6.78 -51.93 -0.35 0.76 16 40 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 41 H 0.13 2.07 7.55 -52.48 -0.40 1.67 16 42 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 43 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 44 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 45 H 0.12 1.81 8.06 -52.49 -0.42 1.38 16 46 H 0.09 0.88 7.70 -51.93 -0.40 0.48 16 47 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 396.48 15.07 5.97 5.97 Total: -1.00 -35.52 396.48 -9.17 -44.69 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -6.93 Total: 1.87 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: -2.37 Total: 1.15 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: 0.49 Total: -38.21 kcal Atomic # 8 Polarization: -30.37 SS G_CDS: -1.67 Total: -32.03 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.67 Total: 16.56 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.52 -9.17 -44.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885561543.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.589 kcal (2) G-P(sol) polarization free energy of solvation -35.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds