Wall clock time and date at job start Wed Apr 1 2020 05:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 110.99002 * 2 1 4 4 C 1.54944 * 111.12661 * 235.80325 * 2 1 3 5 5 O 1.43647 * 105.13786 * 205.63455 * 4 2 1 6 6 C 1.43231 * 109.96926 * 24.42621 * 5 4 2 7 7 H 1.09000 * 109.83022 * 238.67947 * 6 5 4 8 8 C 1.50705 * 109.82660 * 117.80437 * 6 5 4 9 9 O 1.20817 * 120.00494 * 356.45016 * 8 6 5 10 10 O 1.34227 * 119.99689 * 176.45187 * 8 6 5 11 11 C 1.45206 * 117.00114 * 179.97438 * 10 8 6 12 12 C 1.50699 * 109.46973 * 180.02562 * 11 10 8 13 13 O 1.21284 * 120.00343 * 5.12936 * 12 11 10 14 14 N 1.34774 * 119.99598 * 185.12642 * 12 11 10 15 15 C 1.46507 * 120.00197 * 185.22050 * 14 12 11 16 16 C 1.50699 * 109.47196 * 89.99855 * 15 14 12 17 17 H 1.08004 * 119.99772 * 0.02562 * 16 15 14 18 18 C 1.37874 * 119.99992 * 180.02562 * 16 15 14 19 19 N 1.31524 * 119.99782 * 180.02562 * 18 16 15 20 20 Si 1.86792 * 120.00059 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47041 * 90.00111 * 20 18 16 22 22 H 1.48496 * 109.47205 * 209.99780 * 20 18 16 23 23 H 1.48504 * 109.47305 * 330.00104 * 20 18 16 24 24 C 1.39923 * 120.00208 * 5.22140 * 14 12 11 25 25 C 1.38878 * 120.07227 * 292.47397 * 24 14 12 26 26 C 1.38108 * 119.93041 * 179.74778 * 25 24 14 27 27 C 1.38284 * 120.07186 * 0.52854 * 26 25 24 28 28 C 1.38279 * 120.14000 * 359.74500 * 27 26 25 29 29 C 1.38114 * 120.07211 * 359.97438 * 28 27 26 30 30 C 1.54375 * 107.59050 * 358.29012 * 6 5 4 31 31 H 1.08999 * 109.46745 * 182.74525 * 1 2 3 32 32 H 1.08994 * 109.47090 * 302.74278 * 1 2 3 33 33 H 1.08998 * 109.47189 * 62.74307 * 1 2 3 34 34 H 1.09005 * 110.31124 * 86.71916 * 4 2 1 35 35 H 1.08998 * 110.31088 * 324.55095 * 4 2 1 36 36 H 1.09004 * 109.46791 * 299.99988 * 11 10 8 37 37 H 1.09001 * 109.46865 * 59.99959 * 11 10 8 38 38 H 1.08998 * 109.47178 * 210.00070 * 15 14 12 39 39 H 1.08994 * 109.46444 * 330.00196 * 15 14 12 40 40 H 0.96999 * 119.99371 * 180.02562 * 19 18 16 41 41 H 1.08005 * 120.02730 * 0.02562 * 25 24 14 42 42 H 1.08001 * 119.96385 * 180.27666 * 26 25 24 43 43 H 1.07994 * 119.92857 * 179.76938 * 27 26 25 44 44 H 1.07999 * 119.96803 * 179.97438 * 28 27 26 45 45 H 1.07998 * 120.03750 * 180.02562 * 29 28 27 46 46 H 1.08999 * 110.85009 * 96.83213 * 30 6 5 47 47 H 1.08997 * 110.84679 * 220.45281 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9205 1.0177 0.0000 4 6 2.0885 -0.8123 -1.1954 5 8 3.3898 -1.2519 -0.7750 6 6 3.4510 -1.3013 0.6552 7 1 4.2476 -0.6496 1.0139 8 6 3.7057 -2.7162 1.1073 9 8 3.7602 -3.6093 0.2956 10 8 3.8721 -2.9840 2.4120 11 6 4.1132 -4.3692 2.7751 12 6 4.2733 -4.4760 4.2698 13 8 4.1004 -3.5006 4.9696 14 7 4.6087 -5.6556 4.8288 15 6 4.6528 -5.7889 6.2872 16 6 3.3005 -6.2205 6.7933 17 1 2.4895 -6.3799 6.0981 18 6 3.0987 -6.4117 8.1437 19 7 1.9186 -6.7889 8.5853 20 14 4.5012 -6.1352 9.3460 21 1 4.4941 -4.7207 9.7980 22 1 4.3317 -7.0303 10.5187 23 1 5.7929 -6.4347 8.6772 24 6 4.9148 -6.7530 4.0165 25 6 3.9243 -7.3442 3.2431 26 6 4.2308 -8.4239 2.4384 27 6 5.5200 -8.9234 2.4105 28 6 6.5073 -8.3406 3.1836 29 6 6.2086 -7.2570 3.9861 30 6 2.0898 -0.8152 1.1975 31 1 -0.3633 -1.0265 0.0492 32 1 -0.3633 0.5558 0.8643 33 1 -0.3633 0.4706 -0.9135 34 1 2.1703 -0.1784 -2.0784 35 1 1.4481 -1.6697 -1.4024 36 1 3.2692 -4.9806 2.4558 37 1 5.0218 -4.7201 2.2859 38 1 5.3985 -6.5351 6.5614 39 1 4.9179 -4.8297 6.7317 40 1 1.7766 -6.9230 9.5354 41 1 2.9163 -6.9570 3.2677 42 1 3.4619 -8.8812 1.8334 43 1 5.7563 -9.7701 1.7832 44 1 7.5131 -8.7332 3.1600 45 1 6.9802 -6.8020 4.5894 46 1 1.4406 -1.6596 1.4292 47 1 2.2256 -0.1777 2.0711 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885561543.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:09 Heat of formation + Delta-G solvation = -146.891658 kcal Electronic energy + Delta-G solvation = -30609.846528 eV Core-core repulsion = 26336.504202 eV Total energy + Delta-G solvation = -4273.342326 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.19312 -41.45788 -40.24902 -39.53626 -37.64932 -36.63735 -34.81762 -34.66079 -32.29987 -31.86297 -31.40096 -30.33045 -28.82650 -27.39511 -25.38245 -24.40120 -23.84551 -23.37846 -22.13379 -21.48990 -20.73755 -19.27316 -19.17390 -18.93256 -18.12043 -17.75504 -17.56980 -17.26504 -17.05912 -16.75541 -16.42732 -16.03651 -15.66198 -15.44091 -15.04066 -14.77698 -14.70865 -14.49803 -14.42469 -14.27549 -14.01264 -13.84186 -13.81865 -13.55062 -13.28998 -13.24319 -12.89059 -12.61547 -12.39313 -12.36695 -12.27464 -12.12312 -12.07887 -11.99170 -11.78785 -11.70982 -11.57784 -11.23385 -10.87280 -10.78040 -10.21993 -9.89550 -9.34623 -8.38139 -6.44812 0.26109 0.43827 0.89016 0.95318 1.31317 1.34286 1.34848 1.43147 2.07831 2.27636 2.72025 2.78602 2.95710 3.19476 3.26053 3.43194 3.65921 3.78873 3.79923 3.90172 4.00724 4.02879 4.05738 4.23580 4.27144 4.49590 4.51237 4.53608 4.61349 4.63925 4.65845 4.75226 4.79579 4.80407 4.83752 4.99653 5.07098 5.09063 5.18294 5.27826 5.33395 5.34708 5.46975 5.56930 5.60328 5.66420 5.96883 6.14303 6.37618 6.49423 6.55223 6.96577 7.19443 8.78564 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.010289 B = 0.003098 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2720.677698 B = 9035.279700 C =10808.572902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.114 4.114 3 H 0.115 0.885 4 C 0.042 3.958 5 O -0.371 6.371 6 C 0.098 3.902 7 H 0.149 0.851 8 C 0.444 3.556 9 O -0.520 6.520 10 O -0.340 6.340 11 C 0.065 3.935 12 C 0.515 3.485 13 O -0.552 6.552 14 N -0.551 5.551 15 C 0.229 3.771 16 C -0.541 4.541 17 H 0.029 0.971 18 C 0.016 3.984 19 N -0.941 5.941 20 Si 0.945 3.055 21 H -0.270 1.270 22 H -0.273 1.273 23 H -0.238 1.238 24 C 0.111 3.889 25 C -0.141 4.141 26 C -0.107 4.107 27 C -0.116 4.116 28 C -0.101 4.101 29 C -0.132 4.132 30 C -0.142 4.142 31 H 0.049 0.951 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.118 0.882 35 H 0.057 0.943 36 H 0.105 0.895 37 H 0.113 0.887 38 H 0.053 0.947 39 H 0.033 0.967 40 H 0.270 0.730 41 H 0.106 0.894 42 H 0.148 0.852 43 H 0.161 0.839 44 H 0.160 0.840 45 H 0.131 0.869 46 H 0.069 0.931 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.556 7.391 -19.981 22.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.133 4.133 3 H 0.133 0.867 4 C -0.034 4.034 5 O -0.290 6.290 6 C 0.038 3.962 7 H 0.166 0.834 8 C 0.287 3.713 9 O -0.408 6.408 10 O -0.255 6.255 11 C -0.011 4.011 12 C 0.303 3.697 13 O -0.429 6.429 14 N -0.279 5.279 15 C 0.109 3.891 16 C -0.580 4.580 17 H 0.048 0.952 18 C -0.183 4.183 19 N -0.580 5.580 20 Si 0.767 3.233 21 H -0.196 1.196 22 H -0.198 1.198 23 H -0.162 1.162 24 C 0.021 3.979 25 C -0.160 4.160 26 C -0.125 4.125 27 C -0.134 4.134 28 C -0.119 4.119 29 C -0.151 4.151 30 C -0.179 4.179 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.136 0.864 35 H 0.075 0.925 36 H 0.123 0.877 37 H 0.131 0.869 38 H 0.071 0.929 39 H 0.051 0.949 40 H 0.079 0.921 41 H 0.124 0.876 42 H 0.166 0.834 43 H 0.178 0.822 44 H 0.178 0.822 45 H 0.149 0.851 46 H 0.088 0.912 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 5.542 7.539 -19.792 21.892 hybrid contribution -0.408 -0.351 1.200 1.315 sum 5.134 7.188 -18.592 20.583 Atomic orbital electron populations 1.21693 0.92400 1.02278 1.03587 1.22911 0.97894 1.00506 0.91960 0.86681 1.23873 0.82617 0.98064 0.98846 1.88513 1.34264 1.88283 1.17924 1.22467 1.03169 0.87302 0.83229 0.83413 1.25121 0.72368 0.94152 0.79645 1.90648 1.46827 1.48791 1.54545 1.86542 1.81702 1.29549 1.27751 1.22681 1.04954 0.81373 0.92141 1.20347 0.76771 0.82828 0.89771 1.90673 1.50302 1.37248 1.64689 1.45375 1.66379 1.08652 1.07491 1.19526 0.96529 0.97419 0.75641 1.21428 0.96451 1.46866 0.93226 0.95213 1.25801 0.98687 0.93734 1.00044 1.70039 1.24553 1.47874 1.15560 0.85754 0.80163 0.78801 0.78567 1.19561 1.19841 1.16156 1.18041 0.94404 0.90792 0.94692 1.21414 0.97828 0.97889 0.98896 1.21340 0.98400 0.94830 0.97963 1.21610 0.92242 1.00394 0.99132 1.21414 1.01272 0.94274 0.94983 1.21448 0.94389 0.98641 1.00649 1.23260 0.92433 1.01235 1.01021 0.93225 0.91219 0.90326 0.86398 0.92493 0.87710 0.86888 0.92937 0.94881 0.92075 0.87591 0.83447 0.82176 0.82195 0.85141 0.91231 0.86558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.30 71.98 0.67 -0.86 16 2 C -0.11 -1.42 3.69 -9.34 -0.03 -1.46 16 3 H 0.12 1.00 8.14 -2.38 -0.02 0.98 16 4 C 0.04 0.65 7.26 72.65 0.53 1.18 16 5 O -0.37 -8.58 10.56 -130.15 -1.37 -9.96 16 6 C 0.10 2.14 4.06 30.32 0.12 2.26 16 7 H 0.15 2.52 8.14 -2.39 -0.02 2.50 16 8 C 0.44 13.44 7.14 71.24 0.51 13.95 16 9 O -0.52 -18.30 16.27 28.35 0.46 -17.84 16 10 O -0.34 -11.60 9.76 -45.05 -0.44 -12.04 16 11 C 0.07 2.31 4.46 71.24 0.32 2.62 16 12 C 0.51 22.47 7.65 87.66 0.67 23.15 16 13 O -0.55 -28.19 16.06 15.70 0.25 -27.94 16 14 N -0.55 -23.93 2.51 -635.30 -1.59 -25.53 16 15 C 0.23 11.37 4.22 85.63 0.36 11.73 16 16 C -0.54 -32.14 9.94 25.60 0.25 -31.89 16 17 H 0.03 1.97 8.06 -2.91 -0.02 1.95 16 18 C 0.02 0.95 5.47 84.65 0.46 1.41 16 19 N -0.94 -59.31 13.96 21.45 0.30 -59.01 16 20 Si 0.95 44.01 27.47 68.60 1.88 45.90 16 21 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 22 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 23 H -0.24 -9.98 6.54 99.48 0.65 -9.33 16 24 C 0.11 3.99 4.43 38.16 0.17 4.16 16 25 C -0.14 -4.68 8.45 22.39 0.19 -4.49 16 26 C -0.11 -2.69 10.04 22.25 0.22 -2.47 16 27 C -0.12 -2.39 10.04 22.29 0.22 -2.17 16 28 C -0.10 -2.21 10.04 22.25 0.22 -1.99 16 29 C -0.13 -3.84 9.66 22.39 0.22 -3.62 16 30 C -0.14 -2.52 6.01 31.85 0.19 -2.33 16 31 H 0.05 0.65 8.10 -2.39 -0.02 0.63 16 32 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.12 1.27 8.14 -2.38 -0.02 1.25 16 35 H 0.06 0.98 8.03 -2.39 -0.02 0.96 16 36 H 0.11 3.57 6.88 -2.38 -0.02 3.56 16 37 H 0.11 3.56 7.86 -2.39 -0.02 3.54 16 38 H 0.05 2.42 6.90 -2.39 -0.02 2.41 16 39 H 0.03 1.71 6.78 -2.39 -0.02 1.70 16 40 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 41 H 0.11 3.80 7.55 -2.91 -0.02 3.78 16 42 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 43 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 44 H 0.16 2.34 8.06 -2.91 -0.02 2.31 16 45 H 0.13 3.56 8.06 -2.91 -0.02 3.54 16 46 H 0.07 1.47 7.70 -2.39 -0.02 1.45 16 47 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -82.00 396.48 5.70 -76.30 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: 0.91 Total: 20.91 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: 5.30 Total: 9.19 kcal Atomic # 7 Polarization: -83.24 SS G_CDS: -1.29 Total: -84.53 kcal Atomic # 8 Polarization: -66.67 SS G_CDS: -1.10 Total: -67.77 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 1.88 Total: 45.90 kcal Total: -82.00 5.70 -76.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885561543.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.592 kcal (2) G-P(sol) polarization free energy of solvation -82.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds