Wall clock time and date at job start Wed Apr 1 2020 05:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34228 * 117.00385 * 2 1 4 4 O 1.20824 * 119.99672 * 0.02562 * 3 2 1 5 5 C 1.50696 * 119.99979 * 180.02562 * 3 2 1 6 6 H 1.08988 * 109.45298 * 59.96701 * 5 3 2 7 7 C 1.53042 * 109.45854 * 299.99279 * 5 3 2 8 8 C 1.53197 * 109.31053 * 178.61398 * 7 5 3 9 9 N 1.46928 * 108.76996 * 54.64377 * 8 7 5 10 10 C 1.34772 * 120.63066 * 126.36925 * 9 8 7 11 11 O 1.21597 * 120.00147 * 184.39600 * 10 9 8 12 12 C 1.47539 * 120.00099 * 4.39525 * 10 9 8 13 13 C 1.39668 * 120.19786 * 31.18393 * 12 10 9 14 14 C 1.37826 * 119.91879 * 180.02562 * 13 12 10 15 15 C 1.38575 * 120.32475 * 0.02562 * 14 13 12 16 16 C 1.38021 * 120.40081 * 359.97438 * 15 14 13 17 17 C 1.38836 * 120.07561 * 0.02562 * 16 15 14 18 18 O 1.35514 * 120.16385 * 179.97438 * 17 16 15 19 19 C 1.34816 * 116.99931 * 5.73085 * 18 17 16 20 20 H 1.07998 * 120.00145 * 4.58672 * 19 18 17 21 21 C 1.38701 * 120.00099 * 184.58149 * 19 18 17 22 22 N 1.31523 * 119.99894 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00142 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47123 * 60.00102 * 23 21 19 25 25 H 1.48499 * 109.47305 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.46750 * 300.00331 * 23 21 19 27 27 C 1.46930 * 118.73866 * 306.63530 * 9 8 7 28 28 H 1.08998 * 109.58860 * 293.57671 * 27 9 8 29 29 C 1.53000 * 109.58514 * 173.14940 * 27 9 8 30 30 C 1.52760 * 109.00532 * 53.31310 * 27 9 8 31 31 H 1.08999 * 109.47040 * 299.99967 * 1 2 3 32 32 H 1.08991 * 109.47110 * 60.00052 * 1 2 3 33 33 H 1.09007 * 109.47217 * 180.02562 * 1 2 3 34 34 H 1.09005 * 109.49481 * 58.67294 * 7 5 3 35 35 H 1.09000 * 109.52985 * 298.58571 * 7 5 3 36 36 H 1.08998 * 109.58960 * 294.85166 * 8 7 5 37 37 H 1.08999 * 109.70023 * 174.48950 * 8 7 5 38 38 H 1.08001 * 120.03370 * 0.05112 * 13 12 10 39 39 H 1.08000 * 119.83622 * 180.02562 * 14 13 12 40 40 H 1.07994 * 119.79636 * 179.97438 * 15 14 13 41 41 H 1.08006 * 119.96312 * 180.27316 * 16 15 14 42 42 H 0.96996 * 119.99920 * 179.97438 * 22 21 19 43 43 H 1.09004 * 109.47153 * 66.10487 * 29 27 9 44 44 H 1.09000 * 109.46811 * 186.10628 * 29 27 9 45 45 H 1.08999 * 109.46909 * 306.10538 * 29 27 9 46 46 H 1.08996 * 109.56252 * 185.54713 * 30 27 9 47 47 H 1.09005 * 109.38621 * 65.51654 * 30 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9554 0.7802 -0.8905 7 6 4.1137 0.5807 1.2488 8 6 5.6446 0.6324 1.2274 9 7 6.0684 2.0315 1.0798 10 6 6.9346 2.5824 1.9531 11 8 7.2160 3.7623 1.8680 12 6 7.5415 1.7539 3.0123 13 6 7.7837 0.3964 2.7903 14 6 8.3503 -0.3723 3.7840 15 6 8.6812 0.1947 5.0044 16 6 8.4477 1.5348 5.2381 17 6 7.8777 2.3246 4.2488 18 8 7.6471 3.6404 4.4766 19 6 8.1018 4.1491 5.6394 20 1 8.6870 3.5332 6.3061 21 6 7.8180 5.4635 5.9794 22 7 7.1049 6.2135 5.1676 23 14 8.4484 6.1686 7.5902 24 1 9.9319 6.1049 7.6115 25 1 8.0114 7.5822 7.7166 26 1 7.9028 5.3790 8.7233 27 6 5.5253 2.8204 -0.0344 28 1 5.8891 2.4168 -0.9793 29 6 5.9656 4.2788 0.1072 30 6 4.0000 2.7424 -0.0022 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 3.7850 -0.4585 1.2612 35 1 3.7449 1.0896 2.1394 36 1 6.0184 0.0468 0.3876 37 1 6.0390 0.2277 2.1595 38 1 7.5275 -0.0502 1.8409 39 1 8.5374 -1.4218 3.6107 40 1 9.1245 -0.4157 5.7772 41 1 8.7125 1.9704 6.1903 42 1 6.9061 7.1326 5.4056 43 1 7.0466 4.3456 -0.0158 44 1 5.4749 4.8822 -0.6565 45 1 5.6888 4.6475 1.0949 46 1 3.5904 3.2419 -0.8801 47 1 3.6317 3.2316 0.8996 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906448140.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:39 Heat of formation + Delta-G solvation = -88.616107 kcal Electronic energy + Delta-G solvation = -31596.560667 eV Core-core repulsion = 27325.745359 eV Total energy + Delta-G solvation = -4270.815308 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.96750 -40.11242 -38.72792 -37.03105 -36.50365 -36.34362 -33.13280 -32.81078 -32.34858 -30.07409 -29.04630 -28.25150 -27.36958 -25.43912 -25.12501 -23.22659 -22.83096 -21.62093 -21.03597 -20.32479 -19.03163 -18.09141 -17.64924 -17.05538 -16.79920 -16.45271 -16.12676 -15.69758 -14.98393 -14.83171 -14.50877 -14.36707 -14.14107 -14.01606 -13.85700 -13.68607 -13.54150 -13.14167 -12.87497 -12.64739 -12.43846 -12.37839 -12.10996 -11.92719 -11.81537 -11.70692 -11.55159 -11.28591 -11.11829 -11.02380 -10.90920 -10.89922 -10.79631 -10.74825 -10.56903 -10.49444 -10.24540 -9.52327 -8.88588 -8.40212 -8.17917 -8.13458 -7.33055 -6.46973 -4.06083 1.72842 2.05297 2.27622 2.52247 3.11208 3.12975 3.15723 3.34898 3.64890 3.92601 4.40181 4.51800 4.59790 4.64880 4.86951 4.94223 4.98922 5.01695 5.08935 5.10740 5.20969 5.26584 5.28128 5.43748 5.49889 5.54194 5.59466 5.68374 5.76433 5.80447 5.85512 6.01893 6.02403 6.10612 6.17226 6.19514 6.26468 6.53925 6.59126 6.63961 6.81366 6.94314 7.02546 7.18144 7.23757 7.26996 7.59091 7.67089 7.88580 7.98703 8.93887 9.02568 9.64327 10.67741 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.011645 B = 0.003274 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.984382 B = 8551.370205 C = 9467.247687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.359 6.359 3 C 0.465 3.535 4 O -0.504 6.504 5 C -0.077 4.077 6 H 0.109 0.891 7 C -0.128 4.128 8 C 0.092 3.908 9 N -0.619 5.619 10 C 0.566 3.434 11 O -0.498 6.498 12 C -0.225 4.225 13 C -0.053 4.053 14 C -0.230 4.230 15 C -0.053 4.053 16 C -0.237 4.237 17 C 0.190 3.810 18 O -0.135 6.135 19 C -0.400 4.400 20 H 0.093 0.907 21 C 0.045 3.955 22 N -0.838 5.838 23 Si 0.941 3.059 24 H -0.268 1.268 25 H -0.277 1.277 26 H -0.269 1.269 27 C 0.153 3.847 28 H 0.066 0.934 29 C -0.137 4.137 30 C -0.117 4.117 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.100 0.900 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.117 0.883 38 H 0.126 0.874 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.131 0.869 42 H 0.272 0.728 43 H 0.072 0.928 44 H 0.036 0.964 45 H 0.083 0.917 46 H 0.080 0.920 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.035 -14.713 -9.401 18.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.276 6.276 3 C 0.307 3.693 4 O -0.391 6.391 5 C -0.096 4.096 6 H 0.127 0.873 7 C -0.166 4.166 8 C -0.031 4.031 9 N -0.356 5.356 10 C 0.357 3.643 11 O -0.372 6.372 12 C -0.229 4.229 13 C -0.071 4.071 14 C -0.249 4.249 15 C -0.071 4.071 16 C -0.256 4.256 17 C 0.131 3.869 18 O -0.033 6.033 19 C -0.476 4.476 20 H 0.110 0.890 21 C -0.163 4.163 22 N -0.470 5.470 23 Si 0.765 3.235 24 H -0.193 1.193 25 H -0.202 1.202 26 H -0.194 1.194 27 C 0.050 3.950 28 H 0.084 0.916 29 C -0.194 4.194 30 C -0.156 4.156 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.119 0.881 34 H 0.105 0.895 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.135 0.865 38 H 0.144 0.856 39 H 0.128 0.872 40 H 0.128 0.872 41 H 0.149 0.851 42 H 0.082 0.918 43 H 0.091 0.909 44 H 0.055 0.945 45 H 0.102 0.898 46 H 0.099 0.901 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.319 -13.249 -9.581 17.914 hybrid contribution -0.094 0.159 0.858 0.878 sum -7.413 -13.090 -8.723 17.389 Atomic orbital electron populations 1.23253 0.76565 1.03573 1.02544 1.86508 1.23259 1.33660 1.84174 1.23931 0.92133 0.81223 0.71990 1.90678 1.67160 1.36388 1.44826 1.21129 0.86527 0.99928 1.02002 0.87274 1.21997 0.96829 1.01314 0.96507 1.22385 0.93132 0.83416 1.04178 1.48022 1.46411 1.11922 1.29254 1.18219 0.78473 0.87119 0.80475 1.90918 1.60653 1.14941 1.70683 1.18851 1.15346 0.94217 0.94535 1.21100 0.95758 0.91719 0.98570 1.20492 1.09796 0.99324 0.95260 1.20898 0.95802 0.94224 0.96188 1.21159 1.09109 0.94450 1.00887 1.19236 0.90948 0.85122 0.91620 1.84087 1.65059 1.16619 1.37574 1.21388 1.33399 0.96456 0.96362 0.88958 1.25355 0.96321 0.95271 0.99304 1.70077 1.33575 1.08079 1.35243 0.85792 0.79274 0.78361 0.80083 1.19342 1.20162 1.19412 1.21046 0.91386 0.93762 0.88835 0.91635 1.22222 1.02214 0.92247 1.02675 1.21922 0.96123 0.93016 1.04504 0.91891 0.92020 0.88148 0.89491 0.90599 0.91452 0.86514 0.85619 0.87205 0.87230 0.85132 0.91776 0.90930 0.94528 0.89839 0.90108 0.90194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 101.05 1.07 1.34 16 2 O -0.36 -3.79 10.44 -39.25 -0.41 -4.20 16 3 C 0.46 5.73 7.25 36.00 0.26 6.00 16 4 O -0.50 -7.74 15.73 -18.75 -0.29 -8.04 16 5 C -0.08 -0.84 2.59 -91.73 -0.24 -1.08 16 6 H 0.11 0.93 8.14 -51.94 -0.42 0.51 16 7 C -0.13 -1.41 5.30 -26.61 -0.14 -1.55 16 8 C 0.09 1.10 4.75 -3.71 -0.02 1.08 16 9 N -0.62 -9.97 2.98 -166.68 -0.50 -10.47 16 10 C 0.57 12.01 7.24 -12.47 -0.09 11.92 16 11 O -0.50 -12.67 11.20 -13.57 -0.15 -12.82 16 12 C -0.22 -4.71 5.46 -104.81 -0.57 -5.28 16 13 C -0.05 -0.87 7.38 -39.20 -0.29 -1.16 16 14 C -0.23 -3.57 10.02 -39.61 -0.40 -3.97 16 15 C -0.05 -0.90 10.03 -39.54 -0.40 -1.29 16 16 C -0.24 -4.97 9.13 -39.44 -0.36 -5.33 16 17 C 0.19 4.58 6.63 -38.60 -0.26 4.33 16 18 O -0.13 -3.89 8.29 -18.04 -0.15 -4.04 16 19 C -0.40 -11.19 9.45 30.90 0.29 -10.90 16 20 H 0.09 2.35 5.28 -52.49 -0.28 2.07 16 21 C 0.04 1.24 5.49 -17.51 -0.10 1.14 16 22 N -0.84 -24.96 13.67 55.48 0.76 -24.21 16 23 Si 0.94 20.45 29.55 -169.99 -5.02 15.43 16 24 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 25 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 26 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 27 C 0.15 2.22 3.48 -67.82 -0.24 1.99 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 C -0.14 -2.39 7.59 37.16 0.28 -2.11 16 30 C -0.12 -1.56 3.92 -26.83 -0.11 -1.66 16 31 H 0.06 0.53 8.13 -51.93 -0.42 0.10 16 32 H 0.06 0.48 8.13 -51.93 -0.42 0.05 16 33 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.09 0.76 8.09 -51.93 -0.42 0.34 16 35 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.07 0.62 8.04 -51.93 -0.42 0.20 16 37 H 0.12 1.49 4.05 -51.93 -0.21 1.28 16 38 H 0.13 1.62 5.50 -52.49 -0.29 1.33 16 39 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 40 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 41 H 0.13 2.72 5.70 -52.48 -0.30 2.42 16 42 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 43 H 0.07 1.39 6.86 -51.93 -0.36 1.04 16 44 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.08 1.81 6.62 -51.93 -0.34 1.46 16 46 H 0.08 1.00 8.07 -51.93 -0.42 0.58 16 47 H 0.08 1.29 8.13 -51.93 -0.42 0.86 16 LS Contribution 377.19 15.07 5.68 5.68 Total: -1.00 -34.82 377.19 -7.77 -42.59 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -6.39 Total: 6.59 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: -1.29 Total: -6.53 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: 0.26 Total: -34.67 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -1.01 Total: -29.09 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.82 -7.77 -42.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906448140.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.024 kcal (2) G-P(sol) polarization free energy of solvation -34.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds