Wall clock time and date at job start Wed Apr 1 2020 05:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34228 * 117.00385 * 2 1 4 4 O 1.20824 * 119.99672 * 0.02562 * 3 2 1 5 5 C 1.50696 * 119.99979 * 180.02562 * 3 2 1 6 6 H 1.08988 * 109.45298 * 59.96701 * 5 3 2 7 7 C 1.53042 * 109.45854 * 299.99279 * 5 3 2 8 8 C 1.53197 * 109.31053 * 178.61398 * 7 5 3 9 9 N 1.46928 * 108.76996 * 54.64377 * 8 7 5 10 10 C 1.34772 * 120.63066 * 126.36925 * 9 8 7 11 11 O 1.21597 * 120.00147 * 184.39600 * 10 9 8 12 12 C 1.47539 * 120.00099 * 4.39525 * 10 9 8 13 13 C 1.39668 * 120.19786 * 31.18393 * 12 10 9 14 14 C 1.37826 * 119.91879 * 180.02562 * 13 12 10 15 15 C 1.38575 * 120.32475 * 0.02562 * 14 13 12 16 16 C 1.38021 * 120.40081 * 359.97438 * 15 14 13 17 17 C 1.38836 * 120.07561 * 0.02562 * 16 15 14 18 18 O 1.35514 * 120.16385 * 179.97438 * 17 16 15 19 19 C 1.34816 * 116.99931 * 5.73085 * 18 17 16 20 20 H 1.07998 * 120.00145 * 4.58672 * 19 18 17 21 21 C 1.38701 * 120.00099 * 184.58149 * 19 18 17 22 22 N 1.31523 * 119.99894 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00142 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47123 * 60.00102 * 23 21 19 25 25 H 1.48499 * 109.47305 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.46750 * 300.00331 * 23 21 19 27 27 C 1.46930 * 118.73866 * 306.63530 * 9 8 7 28 28 H 1.08998 * 109.58860 * 293.57671 * 27 9 8 29 29 C 1.53000 * 109.58514 * 173.14940 * 27 9 8 30 30 C 1.52760 * 109.00532 * 53.31310 * 27 9 8 31 31 H 1.08999 * 109.47040 * 299.99967 * 1 2 3 32 32 H 1.08991 * 109.47110 * 60.00052 * 1 2 3 33 33 H 1.09007 * 109.47217 * 180.02562 * 1 2 3 34 34 H 1.09005 * 109.49481 * 58.67294 * 7 5 3 35 35 H 1.09000 * 109.52985 * 298.58571 * 7 5 3 36 36 H 1.08998 * 109.58960 * 294.85166 * 8 7 5 37 37 H 1.08999 * 109.70023 * 174.48950 * 8 7 5 38 38 H 1.08001 * 120.03370 * 0.05112 * 13 12 10 39 39 H 1.08000 * 119.83622 * 180.02562 * 14 13 12 40 40 H 1.07994 * 119.79636 * 179.97438 * 15 14 13 41 41 H 1.08006 * 119.96312 * 180.27316 * 16 15 14 42 42 H 0.96996 * 119.99920 * 179.97438 * 22 21 19 43 43 H 1.09004 * 109.47153 * 66.10487 * 29 27 9 44 44 H 1.09000 * 109.46811 * 186.10628 * 29 27 9 45 45 H 1.08999 * 109.46909 * 306.10538 * 29 27 9 46 46 H 1.08996 * 109.56252 * 185.54713 * 30 27 9 47 47 H 1.09005 * 109.38621 * 65.51654 * 30 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9554 0.7802 -0.8905 7 6 4.1137 0.5807 1.2488 8 6 5.6446 0.6324 1.2274 9 7 6.0684 2.0315 1.0798 10 6 6.9346 2.5824 1.9531 11 8 7.2160 3.7623 1.8680 12 6 7.5415 1.7539 3.0123 13 6 7.7837 0.3964 2.7903 14 6 8.3503 -0.3723 3.7840 15 6 8.6812 0.1947 5.0044 16 6 8.4477 1.5348 5.2381 17 6 7.8777 2.3246 4.2488 18 8 7.6471 3.6404 4.4766 19 6 8.1018 4.1491 5.6394 20 1 8.6870 3.5332 6.3061 21 6 7.8180 5.4635 5.9794 22 7 7.1049 6.2135 5.1676 23 14 8.4484 6.1686 7.5902 24 1 9.9319 6.1049 7.6115 25 1 8.0114 7.5822 7.7166 26 1 7.9028 5.3790 8.7233 27 6 5.5253 2.8204 -0.0344 28 1 5.8891 2.4168 -0.9793 29 6 5.9656 4.2788 0.1072 30 6 4.0000 2.7424 -0.0022 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 3.7850 -0.4585 1.2612 35 1 3.7449 1.0896 2.1394 36 1 6.0184 0.0468 0.3876 37 1 6.0390 0.2277 2.1595 38 1 7.5275 -0.0502 1.8409 39 1 8.5374 -1.4218 3.6107 40 1 9.1245 -0.4157 5.7772 41 1 8.7125 1.9704 6.1903 42 1 6.9061 7.1326 5.4056 43 1 7.0466 4.3456 -0.0158 44 1 5.4749 4.8822 -0.6565 45 1 5.6888 4.6475 1.0949 46 1 3.5904 3.2419 -0.8801 47 1 3.6317 3.2316 0.8996 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906448140.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:38 Heat of formation + Delta-G solvation = -111.603391 kcal Electronic energy + Delta-G solvation = -31597.557470 eV Core-core repulsion = 27325.745359 eV Total energy + Delta-G solvation = -4271.812112 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.08169 -41.40969 -40.28599 -38.27902 -38.13057 -37.44716 -34.46472 -34.31760 -33.97380 -31.50389 -30.62611 -29.12396 -28.50682 -27.39850 -26.26181 -24.61841 -24.06805 -22.94181 -22.42421 -21.36505 -20.41659 -19.88085 -18.63135 -18.58742 -17.85147 -17.65324 -17.24677 -17.08425 -16.49382 -16.33637 -16.05768 -15.74147 -15.44801 -15.39374 -15.09047 -15.02629 -14.70686 -14.49586 -14.26544 -14.02189 -13.72257 -13.59987 -13.40801 -13.39563 -13.21666 -12.97752 -12.84285 -12.72731 -12.50420 -12.45038 -12.28310 -12.16509 -12.08132 -11.84829 -11.75167 -11.67921 -11.42383 -11.25368 -10.81830 -9.99401 -9.65858 -9.49277 -8.99756 -8.46448 -6.16032 0.21236 0.74188 1.11319 1.30379 1.43211 1.48080 1.69215 1.96399 2.14691 2.19214 2.85595 3.20749 3.42550 3.46733 3.64664 3.69572 3.79633 3.97134 4.09531 4.16230 4.21218 4.30296 4.31622 4.31867 4.37161 4.48969 4.52716 4.57600 4.64226 4.69159 4.72022 4.74997 4.82381 4.93821 4.98607 4.99980 5.08045 5.09666 5.17186 5.25196 5.35723 5.43284 5.54689 5.62489 5.73550 5.81894 5.95645 6.20835 6.54662 6.68062 6.94442 7.48526 7.79941 8.74756 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.011645 B = 0.003274 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.984382 B = 8551.370205 C = 9467.247687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.354 6.354 3 C 0.467 3.533 4 O -0.544 6.544 5 C -0.070 4.070 6 H 0.155 0.845 7 C -0.122 4.122 8 C 0.084 3.916 9 N -0.611 5.611 10 C 0.552 3.448 11 O -0.559 6.559 12 C -0.239 4.239 13 C -0.042 4.042 14 C -0.196 4.196 15 C -0.045 4.045 16 C -0.258 4.258 17 C 0.147 3.853 18 O -0.201 6.201 19 C -0.422 4.422 20 H 0.105 0.895 21 C -0.023 4.023 22 N -0.910 5.910 23 Si 1.020 2.980 24 H -0.256 1.256 25 H -0.274 1.274 26 H -0.252 1.252 27 C 0.154 3.846 28 H 0.113 0.887 29 C -0.127 4.127 30 C -0.111 4.111 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.136 0.864 34 H 0.125 0.875 35 H 0.040 0.960 36 H 0.122 0.878 37 H 0.112 0.888 38 H 0.175 0.825 39 H 0.167 0.833 40 H 0.151 0.849 41 H 0.119 0.881 42 H 0.270 0.730 43 H 0.049 0.951 44 H 0.060 0.940 45 H 0.026 0.974 46 H 0.092 0.908 47 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.599 -21.007 -10.961 24.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.270 6.270 3 C 0.311 3.689 4 O -0.434 6.434 5 C -0.089 4.089 6 H 0.173 0.827 7 C -0.160 4.160 8 C -0.037 4.037 9 N -0.346 5.346 10 C 0.344 3.656 11 O -0.438 6.438 12 C -0.244 4.244 13 C -0.060 4.060 14 C -0.214 4.214 15 C -0.063 4.063 16 C -0.277 4.277 17 C 0.093 3.907 18 O -0.105 6.105 19 C -0.497 4.497 20 H 0.122 0.878 21 C -0.221 4.221 22 N -0.547 5.547 23 Si 0.838 3.162 24 H -0.180 1.180 25 H -0.199 1.199 26 H -0.176 1.176 27 C 0.052 3.948 28 H 0.130 0.870 29 C -0.185 4.185 30 C -0.149 4.149 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.154 0.846 34 H 0.143 0.857 35 H 0.059 0.941 36 H 0.139 0.861 37 H 0.130 0.870 38 H 0.192 0.808 39 H 0.185 0.815 40 H 0.169 0.831 41 H 0.137 0.863 42 H 0.079 0.921 43 H 0.068 0.932 44 H 0.079 0.921 45 H 0.045 0.955 46 H 0.110 0.890 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -6.895 -19.690 -11.164 23.661 hybrid contribution -0.286 1.637 1.135 2.013 sum -7.181 -18.052 -10.029 21.864 Atomic orbital electron populations 1.23542 0.75119 1.05796 1.02169 1.86489 1.24637 1.32299 1.83537 1.24165 0.92626 0.81183 0.70889 1.90678 1.68099 1.37833 1.46811 1.21136 0.85835 0.97993 1.03890 0.82746 1.21970 0.96032 1.03012 0.94989 1.22779 0.93796 0.81013 1.06070 1.48089 1.44571 1.13830 1.28135 1.18569 0.79307 0.86557 0.81209 1.90917 1.63050 1.17484 1.72305 1.19320 1.15202 0.96445 0.93385 1.21660 0.94045 0.89300 1.00961 1.21224 1.05198 1.01655 0.93360 1.21418 0.94258 0.92453 0.98156 1.21290 1.10021 0.96391 1.00022 1.20042 0.92143 0.84616 0.93932 1.84081 1.68482 1.19342 1.38568 1.21899 1.33912 0.97275 0.96657 0.87808 1.26705 0.96530 0.95431 1.03482 1.70279 1.37528 1.08466 1.38405 0.84649 0.79049 0.77417 0.75047 1.18010 1.19897 1.17633 1.21194 0.92109 0.91541 0.89967 0.86980 1.21981 1.00896 0.95521 1.00064 1.21785 0.94992 0.95243 1.02922 0.92882 0.91934 0.84594 0.85691 0.94115 0.86050 0.87028 0.80836 0.81504 0.83094 0.86320 0.92125 0.93244 0.92139 0.95493 0.88962 0.94593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 113.37 1.20 1.56 16 2 O -0.35 -6.31 10.44 -51.40 -0.54 -6.84 16 3 C 0.47 10.56 7.25 71.23 0.52 11.08 16 4 O -0.54 -16.67 15.73 21.97 0.35 -16.32 16 5 C -0.07 -1.30 2.59 -11.51 -0.03 -1.33 16 6 H 0.16 1.61 8.14 -2.39 -0.02 1.59 16 7 C -0.12 -2.24 5.30 30.67 0.16 -2.08 16 8 C 0.08 1.63 4.75 86.36 0.41 2.04 16 9 N -0.61 -19.09 2.98 -799.53 -2.38 -21.47 16 10 C 0.55 24.54 7.24 86.70 0.63 25.17 16 11 O -0.56 -31.43 11.20 14.00 0.16 -31.27 16 12 C -0.24 -10.10 5.46 -19.98 -0.11 -10.21 16 13 C -0.04 -1.18 7.38 22.52 0.17 -1.02 16 14 C -0.20 -4.86 10.02 22.25 0.22 -4.64 16 15 C -0.04 -1.35 10.03 22.30 0.22 -1.13 16 16 C -0.26 -10.95 9.13 22.36 0.20 -10.74 16 17 C 0.15 7.50 6.63 22.91 0.15 7.65 16 18 O -0.20 -12.82 8.29 -1.99 -0.02 -12.84 16 19 C -0.42 -25.71 9.45 67.93 0.64 -25.07 16 20 H 0.10 5.70 5.28 -2.91 -0.02 5.69 16 21 C -0.02 -1.37 5.49 84.85 0.47 -0.91 16 22 N -0.91 -60.12 13.67 21.62 0.30 -59.82 16 23 Si 1.02 44.93 29.55 68.60 2.03 46.96 16 24 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 25 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 26 H -0.25 -10.23 7.11 99.48 0.71 -9.52 16 27 C 0.15 4.35 3.48 44.83 0.16 4.51 16 28 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 29 C -0.13 -4.83 7.59 71.98 0.55 -4.28 16 30 C -0.11 -2.89 3.92 30.53 0.12 -2.77 16 31 H 0.05 0.83 8.13 -2.39 -0.02 0.81 16 32 H 0.06 0.85 8.13 -2.39 -0.02 0.83 16 33 H 0.14 0.85 8.14 -2.38 -0.02 0.83 16 34 H 0.12 1.44 8.09 -2.38 -0.02 1.42 16 35 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.12 1.22 8.04 -2.39 -0.02 1.20 16 37 H 0.11 2.30 4.05 -2.39 -0.01 2.29 16 38 H 0.17 3.24 5.50 -2.91 -0.02 3.22 16 39 H 0.17 2.49 8.06 -2.91 -0.02 2.47 16 40 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 41 H 0.12 5.18 5.70 -2.91 -0.02 5.17 16 42 H 0.27 16.43 8.31 -92.71 -0.77 15.66 16 43 H 0.05 2.06 6.86 -2.39 -0.02 2.05 16 44 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 45 H 0.03 1.30 6.62 -2.39 -0.02 1.29 16 46 H 0.09 2.19 8.07 -2.39 -0.02 2.17 16 47 H 0.04 1.24 8.13 -2.38 -0.02 1.22 16 Total: -1.00 -94.36 377.19 6.56 -87.79 By element: Atomic # 1 Polarization: 24.98 SS G_CDS: 1.00 Total: 25.98 kcal Atomic # 6 Polarization: -17.84 SS G_CDS: 5.67 Total: -12.17 kcal Atomic # 7 Polarization: -79.21 SS G_CDS: -2.09 Total: -81.29 kcal Atomic # 8 Polarization: -67.22 SS G_CDS: -0.05 Total: -67.28 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -94.36 6.56 -87.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906448140.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.809 kcal (2) G-P(sol) polarization free energy of solvation -94.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds