Wall clock time and date at job start Wed Apr 1 2020 05:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.45863 * 2 1 4 4 C 1.53041 * 109.45269 * 240.03300 * 2 1 3 5 5 C 1.53615 * 109.24256 * 178.49432 * 4 2 1 6 6 N 1.46928 * 108.54616 * 54.86000 * 5 4 2 7 7 C 1.34775 * 120.63333 * 126.36248 * 6 5 4 8 8 O 1.21730 * 119.99800 * 185.16617 * 7 6 5 9 9 C 1.46491 * 119.99876 * 5.17181 * 7 6 5 10 10 C 1.36112 * 125.70994 * 221.33976 * 9 7 6 11 11 C 1.42221 * 107.62975 * 179.97438 * 10 9 7 12 12 C 1.45598 * 140.78484 * 180.02562 * 11 10 9 13 13 C 1.31810 * 114.63174 * 179.97438 * 12 11 10 14 14 S 1.75356 * 111.24882 * 359.97438 * 13 12 11 15 15 C 1.38180 * 106.99379 * 359.97438 * 11 10 9 16 16 N 1.37461 * 108.16308 * 359.82104 * 15 11 10 17 17 H 0.97008 * 125.67568 * 180.27886 * 16 15 11 18 18 C 1.46933 * 118.73275 * 306.09652 * 6 5 4 19 19 C 1.53042 * 109.45974 * 119.97367 * 2 1 3 20 20 H 1.09001 * 109.49828 * 61.42329 * 19 2 1 21 21 C 1.53007 * 109.52024 * 301.34318 * 19 2 1 22 22 N 1.46497 * 109.46782 * 175.14874 * 21 19 2 23 23 C 1.36935 * 120.00153 * 179.97438 * 22 21 19 24 24 H 1.08003 * 119.99977 * 359.97438 * 23 22 21 25 25 C 1.38813 * 120.00244 * 179.97438 * 23 22 21 26 26 N 1.31612 * 119.99970 * 359.97438 * 25 23 22 27 27 Si 1.86802 * 119.99914 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47090 * 89.99664 * 27 25 23 29 29 H 1.48499 * 109.47242 * 209.99571 * 27 25 23 30 30 H 1.48503 * 109.47292 * 329.99890 * 27 25 23 31 31 H 1.08992 * 109.47585 * 300.02488 * 1 2 3 32 32 H 1.08999 * 109.47385 * 60.03298 * 1 2 3 33 33 H 1.09004 * 109.46954 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.49717 * 298.57337 * 4 2 1 35 35 H 1.09002 * 109.49390 * 58.66724 * 4 2 1 36 36 H 1.09004 * 109.74425 * 295.12243 * 5 4 2 37 37 H 1.09002 * 109.66774 * 174.55301 * 5 4 2 38 38 H 1.08001 * 126.18730 * 359.97274 * 10 9 7 39 39 H 1.07995 * 122.67982 * 359.93146 * 12 11 10 40 40 H 1.08002 * 124.37324 * 180.02562 * 13 12 11 41 41 H 1.09006 * 109.58358 * 173.64840 * 18 6 5 42 42 H 1.08998 * 109.58694 * 294.06765 * 18 6 5 43 43 H 1.09007 * 109.46825 * 295.14325 * 21 19 2 44 44 H 1.08992 * 109.47195 * 55.14789 * 21 19 2 45 45 H 0.96999 * 120.00297 * 359.97438 * 22 21 19 46 46 H 0.97007 * 119.99871 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0397 -0.7208 -1.2501 5 6 3.5754 -0.6851 -1.2644 6 7 4.0677 -1.2492 -0.0003 7 6 4.9618 -2.2577 -0.0004 8 8 5.2909 -2.7794 1.0491 9 6 5.5374 -2.7261 -1.2634 10 6 5.7531 -4.0259 -1.6046 11 6 6.3224 -4.0405 -2.9078 12 6 6.8095 -4.9715 -3.9157 13 6 7.2602 -4.4033 -5.0164 14 16 7.1314 -2.6567 -4.9285 15 6 6.4319 -2.7247 -3.3154 16 7 5.9470 -1.9228 -2.3097 17 1 5.9009 -0.9541 -2.3311 18 6 3.5713 -0.6889 1.2641 19 6 2.0399 -0.7209 1.2500 20 1 1.6977 -1.7558 1.2382 21 6 1.5029 -0.0197 2.4994 22 7 1.8952 -0.7766 3.6908 23 6 1.5253 -0.3370 4.9338 24 1 0.9447 0.5679 5.0359 25 6 1.8965 -1.0545 6.0626 26 7 2.6036 -2.1576 5.9382 27 14 1.3913 -0.4552 7.7582 28 1 0.0771 -1.0443 8.1202 29 1 2.4113 -0.8707 8.7544 30 1 1.2839 1.0259 7.7481 31 1 -0.3634 0.5142 0.8897 32 1 -0.3634 0.5133 -0.8903 33 1 -0.3633 -1.0277 0.0005 34 1 1.6975 -1.7556 -1.2384 35 1 1.6570 -0.2207 -2.1398 36 1 3.9188 0.3447 -1.3633 37 1 3.9484 -1.2785 -2.0992 38 1 5.5320 -4.8901 -0.9957 39 1 6.8028 -6.0419 -3.7726 40 1 7.6566 -4.9437 -5.8632 41 1 3.9417 -1.2849 2.0982 42 1 3.9144 0.3405 1.3672 43 1 1.9159 0.9875 2.5565 44 1 0.4157 0.0359 2.4459 45 1 2.4169 -1.5892 3.5991 46 1 2.8627 -2.6592 6.7270 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133032361.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:07 Heat of formation + Delta-G solvation = 49.696611 kcal Electronic energy + Delta-G solvation = -28084.768249 eV Core-core repulsion = 24294.996253 eV Total energy + Delta-G solvation = -3789.771997 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -41.66404 -39.84704 -37.90283 -35.67977 -34.94889 -33.73453 -31.91546 -30.74675 -29.95135 -29.14083 -27.89735 -25.67533 -24.10018 -23.27987 -23.13802 -22.00009 -21.25966 -20.30422 -19.75988 -19.48264 -18.49832 -17.12554 -16.78841 -16.13097 -15.52093 -15.29328 -14.90446 -14.85580 -14.70546 -14.38996 -14.21235 -13.93510 -13.69260 -13.53065 -13.16944 -13.09602 -12.98988 -12.67736 -12.54498 -12.10255 -12.05855 -11.82438 -11.80343 -11.52209 -11.11306 -11.02159 -10.89126 -10.82379 -10.64189 -10.33547 -10.20808 -10.07230 -9.86195 -9.71678 -9.58912 -8.84463 -8.64614 -8.50543 -7.91977 -6.86980 -5.70008 -2.99897 0.78381 1.07426 1.32219 1.70223 2.54983 2.79222 2.86745 3.30904 3.46849 3.51374 3.53829 4.23974 4.54302 4.55681 4.63663 4.74050 4.75883 4.84706 5.06047 5.14488 5.15994 5.24378 5.34606 5.49756 5.57238 5.60052 5.63068 5.65960 5.75418 5.84486 5.86240 5.90544 5.96538 6.01109 6.13348 6.19821 6.21339 6.29915 6.41337 6.46281 6.51434 6.56842 6.79349 6.87626 6.89232 7.33392 7.73988 8.08711 8.47597 9.58588 10.16457 10.50497 11.52201 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.017443 B = 0.002426 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.846194 B =11539.432980 C =12707.534578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 H 0.071 0.929 4 C -0.126 4.126 5 C 0.096 3.904 6 N -0.606 5.606 7 C 0.580 3.420 8 O -0.506 6.506 9 C 0.009 3.991 10 C -0.083 4.083 11 C -0.157 4.157 12 C -0.068 4.068 13 C -0.223 4.223 14 S 0.126 5.874 15 C -0.017 4.017 16 N -0.524 5.524 17 H 0.421 0.579 18 C 0.120 3.880 19 C -0.102 4.102 20 H 0.076 0.924 21 C 0.159 3.841 22 N -0.733 5.733 23 C -0.242 4.242 24 H 0.069 0.931 25 C -0.013 4.013 26 N -0.929 5.929 27 Si 0.906 3.094 28 H -0.290 1.290 29 H -0.291 1.291 30 H -0.283 1.283 31 H 0.066 0.934 32 H 0.049 0.951 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.155 0.845 39 H 0.145 0.855 40 H 0.169 0.831 41 H 0.107 0.893 42 H 0.068 0.932 43 H 0.018 0.982 44 H 0.028 0.972 45 H 0.385 0.615 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.177 0.646 -27.718 28.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.103 4.103 3 H 0.089 0.911 4 C -0.164 4.164 5 C -0.027 4.027 6 N -0.340 5.340 7 C 0.366 3.634 8 O -0.380 6.380 9 C -0.104 4.104 10 C -0.110 4.110 11 C -0.170 4.170 12 C -0.099 4.099 13 C -0.357 4.357 14 S 0.380 5.620 15 C -0.245 4.245 16 N -0.129 5.129 17 H 0.261 0.739 18 C -0.001 4.001 19 C -0.121 4.121 20 H 0.094 0.906 21 C 0.031 3.969 22 N -0.378 5.378 23 C -0.373 4.373 24 H 0.087 0.913 25 C -0.209 4.209 26 N -0.577 5.577 27 Si 0.737 3.263 28 H -0.218 1.218 29 H -0.218 1.218 30 H -0.208 1.208 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.100 0.900 38 H 0.173 0.827 39 H 0.163 0.837 40 H 0.187 0.813 41 H 0.125 0.875 42 H 0.087 0.913 43 H 0.036 0.964 44 H 0.045 0.955 45 H 0.219 0.781 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 6.635 1.738 -27.901 28.732 hybrid contribution -0.483 -0.600 1.780 1.940 sum 6.152 1.138 -26.121 26.860 Atomic orbital electron populations 1.21877 0.94810 1.02064 1.01748 1.21097 0.96127 0.99268 0.93837 0.91084 1.22022 0.93884 1.01912 0.98577 1.22026 0.95810 0.98779 0.86080 1.48160 1.42820 1.34844 1.08131 1.17109 0.79572 0.79874 0.86821 1.90964 1.60886 1.55072 1.31032 1.20046 1.09717 0.90742 0.89943 1.20707 1.01200 0.95134 0.93997 1.19358 1.09766 0.90898 0.97001 1.20354 0.98266 0.99899 0.91351 1.24844 1.11353 0.96039 1.03479 1.83870 1.66677 1.05122 1.06357 1.23529 1.09798 0.93928 0.97250 1.41658 1.51368 1.08292 1.11590 0.73923 1.21819 0.94023 0.99081 0.85167 1.21720 0.94260 1.00949 0.95195 0.90579 1.20716 0.96870 0.94001 0.85315 1.42418 1.65314 1.29261 1.00781 1.19184 1.27973 1.06415 0.83762 0.91275 1.24759 1.00804 0.97534 0.97813 1.69673 1.42220 1.17240 1.28552 0.86216 0.77615 0.77875 0.84607 1.21777 1.21784 1.20832 0.91536 0.93227 0.92696 0.91194 0.90835 0.91305 0.90046 0.82710 0.83737 0.81316 0.87477 0.91346 0.96432 0.95474 0.78090 0.93462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 8.81 37.16 0.33 -1.36 16 2 C -0.08 -1.00 2.23 -90.58 -0.20 -1.20 16 3 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 4 C -0.13 -1.24 5.38 -26.39 -0.14 -1.38 16 5 C 0.10 0.93 5.59 -3.49 -0.02 0.91 16 6 N -0.61 -8.30 2.97 -174.11 -0.52 -8.81 16 7 C 0.58 9.10 7.56 -12.94 -0.10 9.01 16 8 O -0.51 -10.32 16.49 5.16 0.09 -10.24 16 9 C 0.01 0.11 5.76 -82.47 -0.48 -0.36 16 10 C -0.08 -1.05 10.79 -38.82 -0.42 -1.47 16 11 C -0.16 -1.77 6.80 -105.46 -0.72 -2.49 16 12 C -0.07 -0.60 10.42 -38.54 -0.40 -1.00 16 13 C -0.22 -1.63 11.03 28.84 0.32 -1.31 16 14 S 0.13 0.98 23.24 -107.50 -2.50 -1.52 16 15 C -0.02 -0.18 8.41 -15.05 -0.13 -0.30 16 16 N -0.52 -5.26 4.74 -7.94 -0.04 -5.30 16 17 H 0.42 3.19 7.90 -40.82 -0.32 2.87 16 18 C 0.12 1.96 5.52 -3.71 -0.02 1.94 16 19 C -0.10 -1.62 1.92 -90.50 -0.17 -1.79 16 20 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 21 C 0.16 3.12 5.41 -4.04 -0.02 3.10 16 22 N -0.73 -18.74 5.38 -59.91 -0.32 -19.06 16 23 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 24 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 25 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 26 N -0.93 -28.96 13.06 55.49 0.72 -28.23 16 27 Si 0.91 22.83 29.55 -169.99 -5.02 17.80 16 28 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 29 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 30 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 31 H 0.07 0.84 6.30 -51.93 -0.33 0.51 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.71 5.09 -51.93 -0.26 0.45 16 38 H 0.16 1.88 8.06 -52.49 -0.42 1.46 16 39 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 40 H 0.17 0.76 8.06 -52.49 -0.42 0.34 16 41 H 0.11 2.21 6.20 -51.93 -0.32 1.89 16 42 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 43 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.03 0.54 6.15 -51.93 -0.32 0.22 16 45 H 0.38 10.58 6.89 -40.82 -0.28 10.30 16 46 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 379.99 15.07 5.73 5.73 Total: -1.00 -34.28 379.99 -10.74 -45.02 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -6.46 Total: 9.81 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: -2.42 Total: -5.19 kcal Atomic # 7 Polarization: -61.26 SS G_CDS: -0.15 Total: -61.41 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.09 Total: -10.24 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.80 kcal Atomic # 16 Polarization: 0.98 SS G_CDS: -2.50 Total: -1.52 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.28 -10.74 -45.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133032361.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.715 kcal (2) G-P(sol) polarization free energy of solvation -34.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds