Wall clock time and date at job start Wed Apr 1 2020 05:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.45863 * 2 1 4 4 C 1.53041 * 109.45269 * 240.03300 * 2 1 3 5 5 C 1.53615 * 109.24256 * 178.49432 * 4 2 1 6 6 N 1.46928 * 108.54616 * 54.86000 * 5 4 2 7 7 C 1.34775 * 120.63333 * 126.36248 * 6 5 4 8 8 O 1.21730 * 119.99800 * 185.16617 * 7 6 5 9 9 C 1.46491 * 119.99876 * 5.17181 * 7 6 5 10 10 C 1.36112 * 125.70994 * 221.33976 * 9 7 6 11 11 C 1.42221 * 107.62975 * 179.97438 * 10 9 7 12 12 C 1.45598 * 140.78484 * 180.02562 * 11 10 9 13 13 C 1.31810 * 114.63174 * 179.97438 * 12 11 10 14 14 S 1.75356 * 111.24882 * 359.97438 * 13 12 11 15 15 C 1.38180 * 106.99379 * 359.97438 * 11 10 9 16 16 N 1.37461 * 108.16308 * 359.82104 * 15 11 10 17 17 H 0.97008 * 125.67568 * 180.27886 * 16 15 11 18 18 C 1.46933 * 118.73275 * 306.09652 * 6 5 4 19 19 C 1.53042 * 109.45974 * 119.97367 * 2 1 3 20 20 H 1.09001 * 109.49828 * 61.42329 * 19 2 1 21 21 C 1.53007 * 109.52024 * 301.34318 * 19 2 1 22 22 N 1.46497 * 109.46782 * 175.14874 * 21 19 2 23 23 C 1.36935 * 120.00153 * 179.97438 * 22 21 19 24 24 H 1.08003 * 119.99977 * 359.97438 * 23 22 21 25 25 C 1.38813 * 120.00244 * 179.97438 * 23 22 21 26 26 N 1.31612 * 119.99970 * 359.97438 * 25 23 22 27 27 Si 1.86802 * 119.99914 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47090 * 89.99664 * 27 25 23 29 29 H 1.48499 * 109.47242 * 209.99571 * 27 25 23 30 30 H 1.48503 * 109.47292 * 329.99890 * 27 25 23 31 31 H 1.08992 * 109.47585 * 300.02488 * 1 2 3 32 32 H 1.08999 * 109.47385 * 60.03298 * 1 2 3 33 33 H 1.09004 * 109.46954 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.49717 * 298.57337 * 4 2 1 35 35 H 1.09002 * 109.49390 * 58.66724 * 4 2 1 36 36 H 1.09004 * 109.74425 * 295.12243 * 5 4 2 37 37 H 1.09002 * 109.66774 * 174.55301 * 5 4 2 38 38 H 1.08001 * 126.18730 * 359.97274 * 10 9 7 39 39 H 1.07995 * 122.67982 * 359.93146 * 12 11 10 40 40 H 1.08002 * 124.37324 * 180.02562 * 13 12 11 41 41 H 1.09006 * 109.58358 * 173.64840 * 18 6 5 42 42 H 1.08998 * 109.58694 * 294.06765 * 18 6 5 43 43 H 1.09007 * 109.46825 * 295.14325 * 21 19 2 44 44 H 1.08992 * 109.47195 * 55.14789 * 21 19 2 45 45 H 0.96999 * 120.00297 * 359.97438 * 22 21 19 46 46 H 0.97007 * 119.99871 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0397 -0.7208 -1.2501 5 6 3.5754 -0.6851 -1.2644 6 7 4.0677 -1.2492 -0.0003 7 6 4.9618 -2.2577 -0.0004 8 8 5.2909 -2.7794 1.0491 9 6 5.5374 -2.7261 -1.2634 10 6 5.7531 -4.0259 -1.6046 11 6 6.3224 -4.0405 -2.9078 12 6 6.8095 -4.9715 -3.9157 13 6 7.2602 -4.4033 -5.0164 14 16 7.1314 -2.6567 -4.9285 15 6 6.4319 -2.7247 -3.3154 16 7 5.9470 -1.9228 -2.3097 17 1 5.9009 -0.9541 -2.3311 18 6 3.5713 -0.6889 1.2641 19 6 2.0399 -0.7209 1.2500 20 1 1.6977 -1.7558 1.2382 21 6 1.5029 -0.0197 2.4994 22 7 1.8952 -0.7766 3.6908 23 6 1.5253 -0.3370 4.9338 24 1 0.9447 0.5679 5.0359 25 6 1.8965 -1.0545 6.0626 26 7 2.6036 -2.1576 5.9382 27 14 1.3913 -0.4552 7.7582 28 1 0.0771 -1.0443 8.1202 29 1 2.4113 -0.8707 8.7544 30 1 1.2839 1.0259 7.7481 31 1 -0.3634 0.5142 0.8897 32 1 -0.3634 0.5133 -0.8903 33 1 -0.3633 -1.0277 0.0005 34 1 1.6975 -1.7556 -1.2384 35 1 1.6570 -0.2207 -2.1398 36 1 3.9188 0.3447 -1.3633 37 1 3.9484 -1.2785 -2.0992 38 1 5.5320 -4.8901 -0.9957 39 1 6.8028 -6.0419 -3.7726 40 1 7.6566 -4.9437 -5.8632 41 1 3.9417 -1.2849 2.0982 42 1 3.9144 0.3405 1.3672 43 1 1.9159 0.9875 2.5565 44 1 0.4157 0.0359 2.4459 45 1 2.4169 -1.5892 3.5991 46 1 2.8627 -2.6592 6.7270 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133032361.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:07 Heat of formation + Delta-G solvation = 27.550073 kcal Electronic energy + Delta-G solvation = -28085.728595 eV Core-core repulsion = 24294.996253 eV Total energy + Delta-G solvation = -3790.732343 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.58678 -40.95607 -39.16982 -36.75323 -36.26191 -35.11107 -33.56151 -31.64025 -31.60931 -30.07715 -28.95896 -27.28268 -25.25622 -24.89223 -23.87151 -23.01748 -22.64150 -21.29022 -20.90985 -20.25324 -19.48452 -19.10431 -17.92122 -17.26158 -16.76456 -16.59151 -16.08354 -15.79913 -15.60369 -15.50293 -15.38874 -15.32144 -15.12718 -14.66841 -14.37464 -14.35678 -14.15307 -14.06643 -13.74116 -13.17479 -13.06758 -12.81574 -12.79728 -12.72582 -12.68371 -12.53482 -12.22067 -12.02967 -11.92733 -11.83483 -11.75307 -11.49612 -11.26808 -11.11669 -10.93002 -10.56419 -9.83276 -9.26668 -9.00192 -8.63394 -7.94626 -5.24992 0.05786 0.28774 0.44250 1.07516 1.44539 1.47503 1.54385 1.55960 1.70364 2.05168 2.34652 2.54928 3.29868 3.38229 3.61856 3.72335 3.78686 3.82995 3.94309 3.99566 4.16485 4.17515 4.30750 4.42068 4.43417 4.54479 4.63080 4.68770 4.73420 4.75774 4.76630 4.87028 4.93312 5.02397 5.09130 5.14446 5.18541 5.21330 5.26885 5.36055 5.42981 5.45956 5.47888 5.54996 5.62691 6.11663 6.22114 6.25910 6.88479 7.31275 8.08253 8.29875 9.28869 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.017443 B = 0.002426 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.846194 B =11539.432980 C =12707.534578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.077 4.077 3 H 0.090 0.910 4 C -0.120 4.120 5 C 0.091 3.909 6 N -0.598 5.598 7 C 0.577 3.423 8 O -0.570 6.570 9 C -0.004 4.004 10 C -0.099 4.099 11 C -0.178 4.178 12 C -0.090 4.090 13 C -0.211 4.211 14 S 0.169 5.831 15 C -0.023 4.023 16 N -0.512 5.512 17 H 0.434 0.566 18 C 0.127 3.873 19 C -0.089 4.089 20 H 0.048 0.952 21 C 0.157 3.843 22 N -0.749 5.749 23 C -0.243 4.243 24 H 0.080 0.920 25 C -0.081 4.081 26 N -0.972 5.972 27 Si 0.976 3.024 28 H -0.286 1.286 29 H -0.298 1.298 30 H -0.265 1.265 31 H 0.051 0.949 32 H 0.080 0.920 33 H 0.043 0.957 34 H 0.054 0.946 35 H 0.113 0.887 36 H 0.102 0.898 37 H 0.095 0.905 38 H 0.145 0.855 39 H 0.159 0.841 40 H 0.202 0.798 41 H 0.054 0.946 42 H 0.081 0.919 43 H 0.027 0.973 44 H 0.034 0.966 45 H 0.370 0.630 46 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.935 2.818 -31.534 32.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.096 4.096 3 H 0.108 0.892 4 C -0.158 4.158 5 C -0.030 4.030 6 N -0.330 5.330 7 C 0.366 3.634 8 O -0.449 6.449 9 C -0.117 4.117 10 C -0.127 4.127 11 C -0.190 4.190 12 C -0.120 4.120 13 C -0.344 4.344 14 S 0.422 5.578 15 C -0.251 4.251 16 N -0.118 5.118 17 H 0.275 0.725 18 C 0.005 3.995 19 C -0.108 4.108 20 H 0.067 0.933 21 C 0.031 3.969 22 N -0.391 5.391 23 C -0.375 4.375 24 H 0.098 0.902 25 C -0.273 4.273 26 N -0.623 5.623 27 Si 0.805 3.195 28 H -0.213 1.213 29 H -0.225 1.225 30 H -0.190 1.190 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.131 0.869 36 H 0.120 0.880 37 H 0.113 0.887 38 H 0.163 0.837 39 H 0.177 0.823 40 H 0.219 0.781 41 H 0.073 0.927 42 H 0.099 0.901 43 H 0.044 0.956 44 H 0.052 0.948 45 H 0.201 0.799 46 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 6.345 3.994 -31.796 32.668 hybrid contribution -0.392 -1.264 2.792 3.090 sum 5.953 2.730 -29.004 29.734 Atomic orbital electron populations 1.21854 0.94229 1.01643 1.02546 1.21086 0.96529 0.99744 0.92222 0.89209 1.22015 0.93641 1.01249 0.98868 1.22398 0.95908 1.00544 0.84130 1.48194 1.41886 1.34111 1.08806 1.17523 0.79397 0.79480 0.87045 1.90925 1.63163 1.57308 1.33491 1.19488 1.11338 0.91210 0.89699 1.20822 1.01682 0.95039 0.95130 1.19640 1.10195 0.92426 0.96772 1.20527 0.99515 1.00591 0.91371 1.25316 1.09346 0.96151 1.03637 1.83826 1.65346 1.05141 1.03498 1.23990 1.09097 0.93642 0.98373 1.41465 1.50917 1.08686 1.10707 0.72458 1.21512 0.94310 0.98630 0.85085 1.21568 0.93738 0.99587 0.95935 0.93339 1.20919 0.97220 0.93931 0.84831 1.42690 1.65118 1.29275 1.02031 1.19660 1.26708 1.06208 0.84944 0.90212 1.25665 1.01641 0.98014 1.01978 1.69871 1.44345 1.18960 1.29143 0.85096 0.76849 0.78144 0.79405 1.21311 1.22470 1.18997 0.92977 0.90137 0.93773 0.92708 0.86914 0.88005 0.88661 0.83673 0.82311 0.78109 0.92735 0.90072 0.95554 0.94818 0.79869 0.94157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 8.81 71.98 0.63 -2.37 16 2 C -0.08 -1.65 2.23 -10.77 -0.02 -1.68 16 3 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 4 C -0.12 -2.01 5.38 30.81 0.17 -1.84 16 5 C 0.09 1.55 5.59 86.50 0.48 2.03 16 6 N -0.60 -16.72 2.97 -822.95 -2.44 -19.16 16 7 C 0.58 19.35 7.56 86.39 0.65 20.01 16 8 O -0.57 -25.73 16.49 -4.44 -0.07 -25.80 16 9 C 0.00 -0.10 5.76 39.81 0.23 0.13 16 10 C -0.10 -2.64 10.79 22.76 0.25 -2.39 16 11 C -0.18 -3.89 6.80 -20.40 -0.14 -4.03 16 12 C -0.09 -1.42 10.42 23.40 0.24 -1.17 16 13 C -0.21 -2.37 11.03 67.05 0.74 -1.63 16 14 S 0.17 2.05 23.24 -56.49 -1.31 0.74 16 15 C -0.02 -0.43 8.41 83.80 0.70 0.28 16 16 N -0.51 -9.63 4.74 -179.04 -0.85 -10.48 16 17 H 0.43 5.59 7.90 -92.70 -0.73 4.86 16 18 C 0.13 4.35 5.52 86.36 0.48 4.83 16 19 C -0.09 -2.88 1.92 -10.71 -0.02 -2.90 16 20 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 21 C 0.16 6.28 5.41 86.38 0.47 6.75 16 22 N -0.75 -39.94 5.38 -343.45 -1.85 -41.78 16 23 C -0.24 -14.08 9.99 84.03 0.84 -13.25 16 24 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 25 C -0.08 -4.88 5.50 84.86 0.47 -4.42 16 26 N -0.97 -63.49 13.06 21.65 0.28 -63.21 16 27 Si 0.98 47.95 29.55 68.60 2.03 49.98 16 28 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 29 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 30 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 31 H 0.05 1.22 6.30 -2.39 -0.02 1.21 16 32 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 37 H 0.10 1.42 5.09 -2.39 -0.01 1.40 16 38 H 0.15 3.96 8.06 -2.91 -0.02 3.93 16 39 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 40 H 0.20 0.90 8.06 -2.91 -0.02 0.88 16 41 H 0.05 2.48 6.20 -2.38 -0.01 2.46 16 42 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 43 H 0.03 1.02 8.14 -2.38 -0.02 1.00 16 44 H 0.03 1.33 6.15 -2.39 -0.01 1.31 16 45 H 0.37 21.80 6.89 -92.71 -0.64 21.16 16 46 H 0.25 15.82 8.31 -92.70 -0.77 15.05 16 Total: -1.00 -80.56 379.99 1.61 -78.95 By element: Atomic # 1 Polarization: 32.76 SS G_CDS: -0.35 Total: 32.42 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: 6.17 Total: -1.65 kcal Atomic # 7 Polarization: -129.78 SS G_CDS: -4.85 Total: -134.63 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: -0.07 Total: -25.80 kcal Atomic # 14 Polarization: 47.95 SS G_CDS: 2.03 Total: 49.98 kcal Atomic # 16 Polarization: 2.05 SS G_CDS: -1.31 Total: 0.74 kcal Total: -80.56 1.61 -78.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133032361.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.501 kcal (2) G-P(sol) polarization free energy of solvation -80.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds