Wall clock time and date at job start Wed Apr 1 2020 05:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46261 * 2 1 4 4 C 1.53044 * 109.44404 * 240.04010 * 2 1 3 5 5 C 1.52756 * 109.38341 * 301.22718 * 4 2 1 6 6 N 1.46928 * 109.00664 * 305.58496 * 5 4 2 7 7 C 1.34780 * 120.63394 * 233.58383 * 6 5 4 8 8 O 1.21731 * 120.00108 * 179.85888 * 7 6 5 9 9 C 1.46450 * 119.99485 * 359.85484 * 7 6 5 10 10 C 1.37471 * 125.80150 * 150.65515 * 9 7 6 11 11 C 1.40657 * 107.55858 * 179.97438 * 10 9 7 12 12 S 1.76021 * 142.39988 * 180.02562 * 11 10 9 13 13 C 1.75593 * 91.31174 * 179.97438 * 12 11 10 14 14 C 1.32775 * 110.47046 * 0.24456 * 13 12 11 15 15 C 1.38252 * 108.03030 * 359.97438 * 11 10 9 16 16 N 1.37916 * 125.81270 * 330.61130 * 9 7 6 17 17 H 0.96996 * 125.68446 * 0.04186 * 16 9 7 18 18 C 1.46932 * 118.73568 * 53.31422 * 6 5 4 19 19 C 1.53038 * 109.46213 * 119.98055 * 2 1 3 20 20 H 1.08997 * 109.49652 * 178.58938 * 19 2 1 21 21 C 1.52995 * 109.52192 * 298.66867 * 19 2 1 22 22 N 1.46504 * 109.47213 * 184.85288 * 21 19 2 23 23 C 1.36935 * 120.00218 * 179.97438 * 22 21 19 24 24 H 1.08002 * 119.99728 * 0.02562 * 23 22 21 25 25 C 1.38805 * 120.00140 * 179.97438 * 23 22 21 26 26 N 1.31621 * 120.00144 * 0.02562 * 25 23 22 27 27 Si 1.86797 * 120.00200 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47184 * 60.00355 * 27 25 23 29 29 H 1.48501 * 109.47107 * 180.02562 * 27 25 23 30 30 H 1.48504 * 109.47256 * 300.00103 * 27 25 23 31 31 H 1.09001 * 109.46642 * 300.02596 * 1 2 3 32 32 H 1.09000 * 109.47258 * 60.01734 * 1 2 3 33 33 H 1.08997 * 109.47313 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.49861 * 61.30660 * 4 2 1 35 35 H 1.09003 * 109.49488 * 181.36694 * 4 2 1 36 36 H 1.09003 * 109.51004 * 185.70738 * 5 4 2 37 37 H 1.08991 * 109.43546 * 65.42477 * 5 4 2 38 38 H 1.08008 * 126.22252 * 359.94051 * 10 9 7 39 39 H 1.07998 * 124.75807 * 179.97438 * 13 12 11 40 40 H 1.08005 * 122.15844 * 179.74018 * 14 13 12 41 41 H 1.09003 * 109.58404 * 66.42978 * 18 6 5 42 42 H 1.08999 * 109.58463 * 186.85216 * 18 6 5 43 43 H 1.08997 * 109.47750 * 304.85841 * 21 19 2 44 44 H 1.09004 * 109.47226 * 64.85723 * 21 19 2 45 45 H 0.96999 * 119.99376 * 0.02562 * 22 21 19 46 46 H 0.97000 * 120.00191 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0395 -0.7207 -1.2503 5 6 1.5038 -2.1512 -1.2646 6 7 1.8620 -2.8089 -0.0005 7 6 2.5156 -3.9876 -0.0008 8 8 2.8090 -4.5212 1.0533 9 6 2.8728 -4.6265 -1.2693 10 6 3.9541 -5.4489 -1.4790 11 6 3.9300 -5.8459 -2.8282 12 16 4.7977 -6.8179 -4.0116 13 6 3.6440 -6.3938 -5.2656 14 6 2.7098 -5.5836 -4.7823 15 6 2.8306 -5.2595 -3.4271 16 7 2.1811 -4.5060 -2.4564 17 1 1.3757 -3.9827 -2.5913 18 6 1.4993 -2.1543 1.2639 19 6 2.0399 -0.7210 1.2499 20 1 3.1296 -0.7433 1.2379 21 6 1.5580 0.0188 2.4993 22 7 2.1411 -0.6033 3.6906 23 6 1.8509 -0.1075 4.9336 24 1 1.1919 0.7421 5.0358 25 6 2.4029 -0.6973 6.0624 26 7 3.2057 -1.7329 5.9380 27 14 2.0066 -0.0213 7.7581 28 1 0.5423 -0.0995 7.9923 29 1 2.7165 -0.8213 8.7882 30 1 2.4464 1.3946 7.8417 31 1 -0.3633 0.5143 0.8898 32 1 -0.3634 0.5136 -0.8901 33 1 -0.3634 -1.0276 0.0005 34 1 1.6954 -0.1932 -2.1399 35 1 3.1292 -0.7425 -1.2390 36 1 1.9455 -2.6970 -2.0984 37 1 0.4194 -2.1313 -1.3717 38 1 4.6890 -5.7374 -0.7419 39 1 3.6906 -6.7398 -6.2876 40 1 1.9065 -5.2021 -5.3953 41 1 0.4144 -2.1347 1.3672 42 1 1.9380 -2.7021 2.0979 43 1 1.8679 1.0625 2.4459 44 1 0.4708 -0.0348 2.5567 45 1 2.7332 -1.3661 3.5988 46 1 3.5917 -2.1449 6.7267 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133217122.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:18 Heat of formation + Delta-G solvation = 62.982068 kcal Electronic energy + Delta-G solvation = -28295.652117 eV Core-core repulsion = 24506.456221 eV Total energy + Delta-G solvation = -3789.195896 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.78576 -40.03763 -38.05393 -35.68023 -34.94138 -33.60464 -31.97798 -31.25440 -29.93495 -28.78201 -27.58973 -25.65938 -25.04773 -23.43071 -23.23748 -22.18392 -21.25073 -20.88766 -19.56802 -18.78874 -17.86021 -17.08706 -16.75423 -16.11400 -15.73235 -15.51636 -15.14182 -14.98355 -14.60270 -14.45776 -14.37329 -13.92260 -13.71125 -13.58466 -13.23844 -13.09181 -13.00976 -12.74193 -12.53090 -12.15863 -12.07875 -11.75610 -11.70009 -11.28952 -11.15134 -11.07988 -10.91551 -10.79470 -10.67794 -10.34631 -10.24210 -10.07921 -9.95938 -9.86553 -9.59297 -8.83591 -8.63012 -8.29312 -7.90777 -6.87652 -5.69934 -3.00060 0.54536 1.28623 1.79104 1.84538 2.48328 2.53207 2.84483 3.26268 3.47343 3.51306 3.53180 4.31492 4.46895 4.49249 4.61953 4.71998 4.72897 4.83586 5.05106 5.07665 5.10574 5.12727 5.26109 5.46261 5.49746 5.55412 5.57996 5.63365 5.69062 5.73490 5.75954 5.81442 5.88567 5.95604 6.10293 6.22652 6.26628 6.27671 6.31526 6.39030 6.50407 6.59165 6.75156 6.86734 7.00206 7.33101 7.73373 8.09224 8.47644 9.58509 10.16093 10.50184 11.52208 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.017218 B = 0.002475 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.812292 B =11310.900527 C =12617.966096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.085 4.085 3 H 0.076 0.924 4 C -0.127 4.127 5 C 0.084 3.916 6 N -0.604 5.604 7 C 0.579 3.421 8 O -0.507 6.507 9 C 0.022 3.978 10 C -0.079 4.079 11 C -0.213 4.213 12 S 0.131 5.869 13 C -0.193 4.193 14 C -0.113 4.113 15 C 0.054 3.946 16 N -0.544 5.544 17 H 0.422 0.578 18 C 0.120 3.880 19 C -0.102 4.102 20 H 0.075 0.925 21 C 0.161 3.839 22 N -0.733 5.733 23 C -0.243 4.243 24 H 0.069 0.931 25 C -0.012 4.012 26 N -0.929 5.929 27 Si 0.906 3.094 28 H -0.286 1.286 29 H -0.291 1.291 30 H -0.287 1.287 31 H 0.065 0.935 32 H 0.050 0.950 33 H 0.055 0.945 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.157 0.843 39 H 0.171 0.829 40 H 0.140 0.860 41 H 0.071 0.929 42 H 0.106 0.894 43 H 0.021 0.979 44 H 0.023 0.977 45 H 0.385 0.615 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.778 -5.328 -27.995 28.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.104 4.104 3 H 0.094 0.906 4 C -0.165 4.165 5 C -0.039 4.039 6 N -0.337 5.337 7 C 0.366 3.634 8 O -0.381 6.381 9 C -0.092 4.092 10 C -0.110 4.110 11 C -0.334 4.334 12 S 0.390 5.610 13 C -0.329 4.329 14 C -0.146 4.146 15 C -0.064 4.064 16 N -0.152 5.152 17 H 0.266 0.734 18 C -0.001 4.001 19 C -0.122 4.122 20 H 0.093 0.907 21 C 0.033 3.967 22 N -0.378 5.378 23 C -0.375 4.375 24 H 0.087 0.913 25 C -0.209 4.209 26 N -0.577 5.577 27 Si 0.737 3.263 28 H -0.213 1.213 29 H -0.217 1.217 30 H -0.213 1.213 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.102 0.898 37 H 0.092 0.908 38 H 0.174 0.826 39 H 0.189 0.811 40 H 0.157 0.843 41 H 0.090 0.910 42 H 0.125 0.875 43 H 0.039 0.961 44 H 0.041 0.959 45 H 0.219 0.781 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.561 -6.326 -27.226 27.995 hybrid contribution -1.686 1.347 0.701 2.269 sum -3.247 -4.979 -26.525 27.183 Atomic orbital electron populations 1.21993 0.95196 1.01895 1.01945 1.21079 0.96004 0.99523 0.93778 0.90608 1.21839 1.01458 0.94461 0.98749 1.22154 1.00472 0.94896 0.86420 1.48105 1.57039 1.20574 1.08029 1.17060 0.78406 0.80955 0.86974 1.90961 1.52861 1.63427 1.30837 1.20378 0.97413 1.05557 0.85854 1.20425 0.98634 0.98637 0.93277 1.22688 1.02304 1.09131 0.99269 1.83964 1.28493 1.50085 0.98414 1.25223 0.99588 1.04476 1.03579 1.18868 1.02128 1.02236 0.91405 1.18410 0.95761 1.00703 0.91495 1.42753 1.24806 1.40711 1.06927 0.73444 1.21832 1.00086 0.93075 0.85060 1.21696 1.01044 0.94234 0.95234 0.90652 1.20669 0.95979 0.94731 0.85313 1.42411 1.57058 1.37530 1.00775 1.19136 1.23576 1.10980 0.83765 0.91319 1.24758 1.00013 0.98265 0.97820 1.69662 1.35389 1.23954 1.28698 0.86286 0.77618 0.77985 0.84362 1.21308 1.21693 1.21341 0.91599 0.93125 0.92561 0.90734 0.91264 0.89778 0.90769 0.82582 0.81116 0.84265 0.91044 0.87549 0.96134 0.95949 0.78091 0.93392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 8.11 37.16 0.30 -1.30 16 2 C -0.08 -0.99 2.71 -90.58 -0.25 -1.23 16 3 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 4 C -0.13 -1.21 5.61 -26.83 -0.15 -1.36 16 5 C 0.08 0.79 5.03 -3.93 -0.02 0.77 16 6 N -0.60 -8.25 2.98 -174.65 -0.52 -8.77 16 7 C 0.58 9.14 7.61 -12.95 -0.10 9.04 16 8 O -0.51 -10.32 16.40 5.16 0.08 -10.23 16 9 C 0.02 0.29 6.33 -82.10 -0.52 -0.23 16 10 C -0.08 -1.05 10.72 -38.95 -0.42 -1.47 16 11 C -0.21 -2.48 7.26 -38.66 -0.28 -2.76 16 12 S 0.13 1.17 23.31 -107.50 -2.51 -1.34 16 13 C -0.19 -1.35 11.13 28.86 0.32 -1.03 16 14 C -0.11 -0.87 10.16 -40.85 -0.42 -1.28 16 15 C 0.05 0.55 7.67 -84.00 -0.64 -0.09 16 16 N -0.54 -5.37 4.86 -7.34 -0.04 -5.41 16 17 H 0.42 3.03 6.47 -40.82 -0.26 2.76 16 18 C 0.12 1.96 5.05 -3.71 -0.02 1.94 16 19 C -0.10 -1.62 2.15 -90.51 -0.19 -1.82 16 20 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 21 C 0.16 3.16 5.19 -4.04 -0.02 3.14 16 22 N -0.73 -18.75 5.38 -59.91 -0.32 -19.07 16 23 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 24 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 25 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 26 N -0.93 -28.96 13.06 55.49 0.72 -28.24 16 27 Si 0.91 22.83 29.55 -169.99 -5.02 17.80 16 28 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 29 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 30 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 31 H 0.07 0.77 6.58 -51.93 -0.34 0.43 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.59 4.99 -51.93 -0.26 0.33 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.68 3.90 -51.93 -0.20 0.48 16 37 H 0.07 0.57 6.70 -51.93 -0.35 0.22 16 38 H 0.16 2.01 8.06 -52.48 -0.42 1.59 16 39 H 0.17 0.68 8.06 -52.49 -0.42 0.26 16 40 H 0.14 0.71 8.06 -52.48 -0.42 0.28 16 41 H 0.07 1.11 6.69 -51.93 -0.35 0.76 16 42 H 0.11 2.20 6.20 -51.93 -0.32 1.88 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.02 0.44 6.73 -51.93 -0.35 0.09 16 45 H 0.38 10.57 6.89 -40.82 -0.28 10.29 16 46 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 LS Contribution 371.40 15.07 5.60 5.60 Total: -1.00 -34.40 371.40 -10.72 -45.11 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -6.07 Total: 9.71 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: -2.65 Total: -5.17 kcal Atomic # 7 Polarization: -61.33 SS G_CDS: -0.15 Total: -61.48 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.08 Total: -10.23 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.80 kcal Atomic # 16 Polarization: 1.17 SS G_CDS: -2.51 Total: -1.34 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.40 -10.72 -45.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133217122.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.094 kcal (2) G-P(sol) polarization free energy of solvation -34.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds