Wall clock time and date at job start Wed Apr 1 2020 05:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.44902 * 2 1 4 4 C 1.53040 * 109.46336 * 119.96439 * 2 1 3 5 5 C 1.53189 * 109.31537 * 181.38526 * 4 2 1 6 6 N 1.46921 * 108.77723 * 305.36842 * 5 4 2 7 7 C 1.34780 * 120.63101 * 233.58591 * 6 5 4 8 8 O 1.21730 * 119.99827 * 173.23418 * 7 6 5 9 9 C 1.46454 * 119.99895 * 353.23519 * 7 6 5 10 10 C 1.37462 * 125.80145 * 156.16712 * 9 7 6 11 11 C 1.40659 * 107.55044 * 179.97438 * 10 9 7 12 12 S 1.76022 * 142.39495 * 179.97438 * 11 10 9 13 13 C 1.75588 * 91.31218 * 180.02562 * 12 11 10 14 14 C 1.32774 * 110.47450 * 0.02562 * 13 12 11 15 15 C 1.38246 * 108.03573 * 359.97438 * 11 10 9 16 16 N 1.37913 * 125.80614 * 335.86078 * 9 7 6 17 17 H 0.97005 * 125.68309 * 0.02963 * 16 9 7 18 18 C 1.46930 * 118.73799 * 53.60642 * 6 5 4 19 19 C 1.53039 * 109.46224 * 240.03827 * 2 1 3 20 20 H 1.09000 * 109.52225 * 298.57968 * 19 2 1 21 21 C 1.53003 * 109.49956 * 58.66022 * 19 2 1 22 22 N 1.46497 * 109.46896 * 184.83970 * 21 19 2 23 23 C 1.36938 * 119.99878 * 179.97438 * 22 21 19 24 24 H 1.08004 * 119.99729 * 0.02562 * 23 22 21 25 25 C 1.38805 * 120.00465 * 179.97438 * 23 22 21 26 26 N 1.31617 * 120.00580 * 180.02562 * 25 23 22 27 27 Si 1.86803 * 119.99824 * 0.02562 * 25 23 22 28 28 H 1.48502 * 109.47256 * 269.99943 * 27 25 23 29 29 H 1.48503 * 109.46944 * 29.99787 * 27 25 23 30 30 H 1.48501 * 109.47254 * 149.99862 * 27 25 23 31 31 H 1.08999 * 109.46964 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47289 * 299.96677 * 1 2 3 33 33 H 1.09007 * 109.46914 * 59.96482 * 1 2 3 34 34 H 1.08998 * 109.49339 * 61.43471 * 4 2 1 35 35 H 1.08998 * 109.49917 * 301.34450 * 4 2 1 36 36 H 1.09001 * 109.58774 * 185.58216 * 5 4 2 37 37 H 1.09005 * 109.70116 * 65.22394 * 5 4 2 38 38 H 1.08001 * 126.22603 * 359.94180 * 10 9 7 39 39 H 1.08000 * 124.76455 * 179.97438 * 13 12 11 40 40 H 1.07998 * 122.15974 * 179.97438 * 14 13 12 41 41 H 1.09000 * 109.58670 * 186.60416 * 18 6 5 42 42 H 1.09002 * 109.58596 * 66.18120 * 18 6 5 43 43 H 1.08996 * 109.46693 * 64.84009 * 21 19 2 44 44 H 1.09001 * 109.46694 * 304.83902 * 21 19 2 45 45 H 0.97001 * 120.00721 * 0.02562 * 22 21 19 46 46 H 0.97001 * 120.00135 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0279 0.0000 4 6 2.0399 -0.7207 1.2501 5 6 3.5714 -0.6885 1.2642 6 7 4.0679 -1.2487 0.0000 7 6 4.9622 -2.2571 0.0000 8 8 5.2729 -2.7950 -1.0469 9 6 5.5600 -2.7057 1.2594 10 6 6.0945 -3.9495 1.4978 11 6 6.5588 -3.9643 2.8254 12 16 7.3446 -4.9950 4.0165 13 6 7.2940 -3.7147 5.2171 14 6 6.7238 -2.6270 4.7125 15 6 6.3017 -2.7256 3.3827 16 7 5.6877 -1.9502 2.4061 17 1 5.3958 -1.0314 2.5138 18 6 3.5714 -0.6884 -1.2643 19 6 2.0399 -0.7206 -1.2501 20 1 1.6979 -1.7555 -1.2390 21 6 1.5028 -0.0187 -2.4990 22 7 1.8951 -0.7749 -3.6909 23 6 1.5241 -0.3351 -4.9336 24 1 0.9427 0.5694 -5.0349 25 6 1.8962 -1.0512 -6.0629 26 7 1.5401 -0.6283 -7.2573 27 14 2.9024 -2.6153 -5.8876 28 1 4.3487 -2.2806 -5.9276 29 1 2.5810 -3.2681 -4.5931 30 1 2.5775 -3.5405 -7.0028 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5133 0.8902 33 1 -0.3633 0.5144 -0.8897 34 1 1.6979 -1.7556 1.2383 35 1 1.6572 -0.2208 2.1398 36 1 3.9417 -1.2845 2.0984 37 1 3.9164 0.3402 1.3685 38 1 6.1478 -4.7669 0.7938 39 1 7.6726 -3.8003 6.2250 40 1 6.5951 -1.7243 5.2912 41 1 3.9417 -1.2843 -2.0984 42 1 3.9143 0.3411 -1.3673 43 1 1.9155 0.9885 -2.5555 44 1 0.4155 0.0366 -2.4454 45 1 2.4169 -1.5875 -3.5999 46 1 1.7999 -1.1289 -8.0465 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133217124.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:23 Heat of formation + Delta-G solvation = 61.816561 kcal Electronic energy + Delta-G solvation = -28259.097756 eV Core-core repulsion = 24469.851320 eV Total energy + Delta-G solvation = -3789.246436 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 3.00 seconds Orbital eigenvalues (eV) -41.86478 -40.02630 -38.09162 -35.78942 -35.15642 -33.89997 -32.05758 -31.34674 -30.32407 -29.17513 -27.98133 -25.96215 -24.33591 -23.27406 -23.08965 -22.04495 -21.19569 -20.97166 -20.00597 -19.42096 -18.31141 -17.50386 -16.80427 -16.25187 -15.83723 -15.66900 -14.96127 -14.94570 -14.58499 -14.45155 -14.28601 -14.10821 -13.90958 -13.52889 -13.47211 -13.22940 -13.07619 -12.82199 -12.55627 -12.21811 -12.16598 -11.93441 -11.89272 -11.69938 -11.31688 -11.16444 -11.03445 -10.92330 -10.70623 -10.45232 -10.28090 -10.12555 -10.05250 -9.93685 -9.53878 -8.89672 -8.78740 -8.39020 -7.99612 -7.19596 -5.73429 -3.09179 0.44515 1.20753 1.67750 1.75292 2.40024 2.43836 2.73473 3.13079 3.46282 3.51371 3.54814 4.20127 4.38693 4.38870 4.61853 4.62707 4.64996 4.67266 4.89913 4.97870 5.00378 5.03140 5.18381 5.38884 5.41757 5.46176 5.50124 5.57024 5.60418 5.63434 5.65121 5.68972 5.76797 5.78594 5.93029 6.04273 6.13017 6.18508 6.25260 6.27337 6.30740 6.41735 6.67856 6.73343 6.91259 7.17630 7.93232 8.01733 8.45396 9.24444 9.97374 10.16287 11.44683 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.014967 B = 0.002748 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.295162 B =10185.056474 C =11703.677422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.083 4.083 3 H 0.074 0.926 4 C -0.126 4.126 5 C 0.086 3.914 6 N -0.608 5.608 7 C 0.582 3.418 8 O -0.513 6.513 9 C 0.018 3.982 10 C -0.076 4.076 11 C -0.216 4.216 12 S 0.132 5.868 13 C -0.190 4.190 14 C -0.114 4.114 15 C 0.058 3.942 16 N -0.544 5.544 17 H 0.422 0.578 18 C 0.119 3.881 19 C -0.107 4.107 20 H 0.076 0.924 21 C 0.163 3.837 22 N -0.757 5.757 23 C -0.245 4.245 24 H 0.090 0.910 25 C 0.006 3.994 26 N -0.934 5.934 27 Si 0.881 3.119 28 H -0.282 1.282 29 H -0.276 1.276 30 H -0.291 1.291 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.073 0.927 38 H 0.156 0.844 39 H 0.172 0.828 40 H 0.141 0.859 41 H 0.100 0.900 42 H 0.074 0.926 43 H 0.027 0.973 44 H 0.036 0.964 45 H 0.362 0.638 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.422 -2.072 31.297 32.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.102 4.102 3 H 0.092 0.908 4 C -0.164 4.164 5 C -0.038 4.038 6 N -0.341 5.341 7 C 0.369 3.631 8 O -0.387 6.387 9 C -0.096 4.096 10 C -0.106 4.106 11 C -0.336 4.336 12 S 0.392 5.608 13 C -0.326 4.326 14 C -0.148 4.148 15 C -0.060 4.060 16 N -0.152 5.152 17 H 0.266 0.734 18 C -0.002 4.002 19 C -0.126 4.126 20 H 0.094 0.906 21 C 0.036 3.964 22 N -0.403 5.403 23 C -0.375 4.375 24 H 0.108 0.892 25 C -0.190 4.190 26 N -0.582 5.582 27 Si 0.711 3.289 28 H -0.209 1.209 29 H -0.202 1.202 30 H -0.217 1.217 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.104 0.896 37 H 0.091 0.909 38 H 0.174 0.826 39 H 0.190 0.810 40 H 0.158 0.842 41 H 0.118 0.882 42 H 0.092 0.908 43 H 0.045 0.955 44 H 0.054 0.946 45 H 0.195 0.805 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.969 -3.508 30.524 32.007 hybrid contribution 0.011 0.840 0.144 0.853 sum 8.979 -2.667 30.668 32.066 Atomic orbital electron populations 1.21887 0.94595 1.02121 1.02001 1.21080 0.96299 0.99354 0.93505 0.90799 1.21955 0.93662 1.02013 0.98815 1.22207 0.96193 0.99151 0.86208 1.48100 1.42790 1.35128 1.08074 1.17058 0.79400 0.79749 0.86847 1.90930 1.61889 1.54683 1.31228 1.20317 1.09014 0.93094 0.87216 1.20429 1.00496 0.96309 0.93408 1.22698 1.12666 0.98306 0.99942 1.83983 1.61641 1.13955 1.01254 1.25243 1.06886 0.96655 1.03862 1.18880 1.03541 1.00548 0.91787 1.18419 1.04485 0.91207 0.91918 1.42717 1.49772 1.13756 1.08914 0.73439 1.21821 0.94083 0.99284 0.85036 1.21788 0.94209 1.01045 0.95606 0.90599 1.20699 0.97436 0.94075 0.84218 1.42779 1.66181 1.28772 1.02553 1.19019 1.28654 1.07985 0.81812 0.89247 1.24653 1.00542 0.98660 0.95112 1.69703 1.50790 1.40702 0.97016 0.86601 0.80841 0.84399 0.77045 1.20856 1.20191 1.21720 0.92698 0.93067 0.91341 0.91187 0.90548 0.89624 0.90882 0.82602 0.81037 0.84176 0.88152 0.90808 0.95467 0.94619 0.80501 0.93076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 53. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 8.81 37.16 0.33 -1.25 16 2 C -0.08 -0.90 2.23 -90.58 -0.20 -1.10 16 3 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 4 C -0.13 -1.10 5.36 -26.61 -0.14 -1.24 16 5 C 0.09 0.73 5.28 -3.72 -0.02 0.71 16 6 N -0.61 -7.71 2.97 -174.39 -0.52 -8.23 16 7 C 0.58 8.62 7.61 -12.95 -0.10 8.52 16 8 O -0.51 -9.81 16.37 5.16 0.08 -9.72 16 9 C 0.02 0.22 6.34 -82.10 -0.52 -0.30 16 10 C -0.08 -0.94 10.68 -38.95 -0.42 -1.36 16 11 C -0.22 -2.36 7.26 -38.67 -0.28 -2.64 16 12 S 0.13 1.10 23.31 -107.50 -2.51 -1.40 16 13 C -0.19 -1.23 11.13 28.86 0.32 -0.91 16 14 C -0.11 -0.81 10.16 -40.84 -0.42 -1.23 16 15 C 0.06 0.55 7.67 -84.00 -0.64 -0.09 16 16 N -0.54 -4.99 4.87 -7.34 -0.04 -5.02 16 17 H 0.42 2.74 6.39 -40.82 -0.26 2.48 16 18 C 0.12 1.80 5.53 -3.71 -0.02 1.78 16 19 C -0.11 -1.58 1.92 -90.50 -0.17 -1.75 16 20 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 21 C 0.16 3.04 5.41 -4.04 -0.02 3.02 16 22 N -0.76 -18.19 5.18 -59.91 -0.31 -18.50 16 23 C -0.24 -7.03 10.47 -15.06 -0.16 -7.18 16 24 H 0.09 2.72 8.06 -52.48 -0.42 2.29 16 25 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 26 N -0.93 -29.89 13.97 55.49 0.78 -29.12 16 27 Si 0.88 23.29 27.74 -169.99 -4.71 18.57 16 28 H -0.28 -7.49 7.11 56.52 0.40 -7.08 16 29 H -0.28 -7.03 6.52 56.52 0.37 -6.66 16 30 H -0.29 -7.72 7.11 56.52 0.40 -7.32 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.81 6.30 -51.92 -0.33 0.49 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.09 0.63 4.22 -51.93 -0.22 0.41 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.16 1.88 8.06 -52.49 -0.42 1.45 16 39 H 0.17 0.60 8.06 -52.49 -0.42 0.18 16 40 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 41 H 0.10 1.88 6.20 -51.93 -0.32 1.56 16 42 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.04 0.67 6.15 -51.93 -0.32 0.35 16 45 H 0.36 8.78 4.75 -40.82 -0.19 8.59 16 46 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16 LS Contribution 374.34 15.07 5.64 5.64 Total: -1.00 -35.29 374.34 -10.45 -45.74 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -6.31 Total: 6.99 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -2.56 Total: -4.95 kcal Atomic # 7 Polarization: -60.77 SS G_CDS: -0.09 Total: -60.86 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.08 Total: -9.72 kcal Atomic # 14 Polarization: 23.29 SS G_CDS: -4.71 Total: 18.57 kcal Atomic # 16 Polarization: 1.10 SS G_CDS: -2.51 Total: -1.40 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.29 -10.45 -45.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133217124.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.556 kcal (2) G-P(sol) polarization free energy of solvation -35.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.00 seconds