Wall clock time and date at job start Wed Apr 1 2020 05:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.44902 * 2 1 4 4 C 1.53040 * 109.46336 * 119.96439 * 2 1 3 5 5 C 1.53189 * 109.31537 * 181.38526 * 4 2 1 6 6 N 1.46921 * 108.77723 * 305.36842 * 5 4 2 7 7 C 1.34780 * 120.63101 * 233.58591 * 6 5 4 8 8 O 1.21730 * 119.99827 * 173.23418 * 7 6 5 9 9 C 1.46454 * 119.99895 * 353.23519 * 7 6 5 10 10 C 1.37462 * 125.80145 * 156.16712 * 9 7 6 11 11 C 1.40659 * 107.55044 * 179.97438 * 10 9 7 12 12 S 1.76022 * 142.39495 * 179.97438 * 11 10 9 13 13 C 1.75588 * 91.31218 * 180.02562 * 12 11 10 14 14 C 1.32774 * 110.47450 * 0.02562 * 13 12 11 15 15 C 1.38246 * 108.03573 * 359.97438 * 11 10 9 16 16 N 1.37913 * 125.80614 * 335.86078 * 9 7 6 17 17 H 0.97005 * 125.68309 * 0.02963 * 16 9 7 18 18 C 1.46930 * 118.73799 * 53.60642 * 6 5 4 19 19 C 1.53039 * 109.46224 * 240.03827 * 2 1 3 20 20 H 1.09000 * 109.52225 * 298.57968 * 19 2 1 21 21 C 1.53003 * 109.49956 * 58.66022 * 19 2 1 22 22 N 1.46497 * 109.46896 * 184.83970 * 21 19 2 23 23 C 1.36938 * 119.99878 * 179.97438 * 22 21 19 24 24 H 1.08004 * 119.99729 * 0.02562 * 23 22 21 25 25 C 1.38805 * 120.00465 * 179.97438 * 23 22 21 26 26 N 1.31617 * 120.00580 * 180.02562 * 25 23 22 27 27 Si 1.86803 * 119.99824 * 0.02562 * 25 23 22 28 28 H 1.48502 * 109.47256 * 269.99943 * 27 25 23 29 29 H 1.48503 * 109.46944 * 29.99787 * 27 25 23 30 30 H 1.48501 * 109.47254 * 149.99862 * 27 25 23 31 31 H 1.08999 * 109.46964 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47289 * 299.96677 * 1 2 3 33 33 H 1.09007 * 109.46914 * 59.96482 * 1 2 3 34 34 H 1.08998 * 109.49339 * 61.43471 * 4 2 1 35 35 H 1.08998 * 109.49917 * 301.34450 * 4 2 1 36 36 H 1.09001 * 109.58774 * 185.58216 * 5 4 2 37 37 H 1.09005 * 109.70116 * 65.22394 * 5 4 2 38 38 H 1.08001 * 126.22603 * 359.94180 * 10 9 7 39 39 H 1.08000 * 124.76455 * 179.97438 * 13 12 11 40 40 H 1.07998 * 122.15974 * 179.97438 * 14 13 12 41 41 H 1.09000 * 109.58670 * 186.60416 * 18 6 5 42 42 H 1.09002 * 109.58596 * 66.18120 * 18 6 5 43 43 H 1.08996 * 109.46693 * 64.84009 * 21 19 2 44 44 H 1.09001 * 109.46694 * 304.83902 * 21 19 2 45 45 H 0.97001 * 120.00721 * 0.02562 * 22 21 19 46 46 H 0.97001 * 120.00135 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0279 0.0000 4 6 2.0399 -0.7207 1.2501 5 6 3.5714 -0.6885 1.2642 6 7 4.0679 -1.2487 0.0000 7 6 4.9622 -2.2571 0.0000 8 8 5.2729 -2.7950 -1.0469 9 6 5.5600 -2.7057 1.2594 10 6 6.0945 -3.9495 1.4978 11 6 6.5588 -3.9643 2.8254 12 16 7.3446 -4.9950 4.0165 13 6 7.2940 -3.7147 5.2171 14 6 6.7238 -2.6270 4.7125 15 6 6.3017 -2.7256 3.3827 16 7 5.6877 -1.9502 2.4061 17 1 5.3958 -1.0314 2.5138 18 6 3.5714 -0.6884 -1.2643 19 6 2.0399 -0.7206 -1.2501 20 1 1.6979 -1.7555 -1.2390 21 6 1.5028 -0.0187 -2.4990 22 7 1.8951 -0.7749 -3.6909 23 6 1.5241 -0.3351 -4.9336 24 1 0.9427 0.5694 -5.0349 25 6 1.8962 -1.0512 -6.0629 26 7 1.5401 -0.6283 -7.2573 27 14 2.9024 -2.6153 -5.8876 28 1 4.3487 -2.2806 -5.9276 29 1 2.5810 -3.2681 -4.5931 30 1 2.5775 -3.5405 -7.0028 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5133 0.8902 33 1 -0.3633 0.5144 -0.8897 34 1 1.6979 -1.7556 1.2383 35 1 1.6572 -0.2208 2.1398 36 1 3.9417 -1.2845 2.0984 37 1 3.9164 0.3402 1.3685 38 1 6.1478 -4.7669 0.7938 39 1 7.6726 -3.8003 6.2250 40 1 6.5951 -1.7243 5.2912 41 1 3.9417 -1.2843 -2.0984 42 1 3.9143 0.3411 -1.3673 43 1 1.9155 0.9885 -2.5555 44 1 0.4155 0.0366 -2.4454 45 1 2.4169 -1.5875 -3.5999 46 1 1.7999 -1.1289 -8.0465 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133217124.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:23 Heat of formation + Delta-G solvation = 38.565331 kcal Electronic energy + Delta-G solvation = -28260.106005 eV Core-core repulsion = 24469.851320 eV Total energy + Delta-G solvation = -3790.254685 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.69687 -41.02332 -39.24659 -36.93052 -36.27351 -35.17466 -33.74780 -32.35101 -31.77859 -30.05649 -28.95885 -27.41831 -25.20971 -24.73583 -23.95211 -22.98980 -22.64005 -21.78428 -21.11499 -20.22099 -19.68340 -19.07069 -17.72237 -17.27211 -16.76854 -16.69046 -16.50027 -15.95065 -15.80661 -15.50010 -15.30884 -15.08250 -14.99622 -14.78230 -14.63884 -14.40787 -14.22127 -14.13544 -13.84531 -13.44310 -13.27023 -12.92917 -12.84693 -12.74241 -12.69535 -12.52928 -12.26179 -12.08065 -11.91128 -11.85321 -11.74077 -11.52201 -11.31711 -11.15376 -11.01191 -10.77175 -9.89015 -9.31523 -9.12910 -8.68058 -8.08008 -5.39353 -0.27564 0.55565 0.81087 1.16156 1.31517 1.35330 1.39598 1.55445 1.76651 1.78613 2.16629 2.41307 3.24272 3.30972 3.48477 3.63192 3.75396 3.78831 3.90782 3.95994 3.96390 4.11067 4.23740 4.36599 4.38932 4.49649 4.51481 4.64327 4.70267 4.72979 4.74793 4.84979 4.89512 4.93166 5.00838 5.07006 5.07963 5.16736 5.19241 5.30959 5.37615 5.43875 5.52640 5.54058 5.72462 6.14408 6.17234 6.29054 6.84564 7.03192 7.80965 7.96917 9.13514 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.014967 B = 0.002748 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.295162 B =10185.056474 C =11703.677422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.077 4.077 3 H 0.091 0.909 4 C -0.120 4.120 5 C 0.080 3.920 6 N -0.601 5.601 7 C 0.578 3.422 8 O -0.572 6.572 9 C 0.002 3.998 10 C -0.092 4.092 11 C -0.251 4.251 12 S 0.122 5.878 13 C -0.167 4.167 14 C -0.125 4.125 15 C 0.072 3.928 16 N -0.528 5.528 17 H 0.436 0.564 18 C 0.122 3.878 19 C -0.094 4.094 20 H 0.055 0.945 21 C 0.159 3.841 22 N -0.763 5.763 23 C -0.227 4.227 24 H 0.066 0.934 25 C -0.056 4.056 26 N -0.979 5.979 27 Si 0.942 3.058 28 H -0.284 1.284 29 H -0.266 1.266 30 H -0.290 1.290 31 H 0.045 0.955 32 H 0.079 0.921 33 H 0.050 0.950 34 H 0.055 0.945 35 H 0.115 0.885 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.143 0.857 39 H 0.209 0.791 40 H 0.175 0.825 41 H 0.057 0.943 42 H 0.087 0.913 43 H 0.034 0.966 44 H 0.039 0.961 45 H 0.360 0.640 46 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.050 -1.056 36.541 37.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.096 4.096 3 H 0.110 0.890 4 C -0.158 4.158 5 C -0.041 4.041 6 N -0.332 5.332 7 C 0.368 3.632 8 O -0.452 6.452 9 C -0.112 4.112 10 C -0.123 4.123 11 C -0.371 4.371 12 S 0.381 5.619 13 C -0.303 4.303 14 C -0.157 4.157 15 C -0.048 4.048 16 N -0.137 5.137 17 H 0.282 0.718 18 C -0.001 4.001 19 C -0.114 4.114 20 H 0.074 0.926 21 C 0.033 3.967 22 N -0.408 5.408 23 C -0.358 4.358 24 H 0.084 0.916 25 C -0.248 4.248 26 N -0.630 5.630 27 Si 0.771 3.229 28 H -0.211 1.211 29 H -0.192 1.192 30 H -0.216 1.216 31 H 0.064 0.936 32 H 0.098 0.902 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.133 0.867 36 H 0.119 0.881 37 H 0.124 0.876 38 H 0.161 0.839 39 H 0.225 0.775 40 H 0.192 0.808 41 H 0.076 0.924 42 H 0.105 0.895 43 H 0.052 0.948 44 H 0.057 0.943 45 H 0.193 0.807 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 9.561 -2.442 35.852 37.185 hybrid contribution -0.192 0.573 -1.327 1.458 sum 9.368 -1.869 34.525 35.822 Atomic orbital electron populations 1.21869 0.94307 1.01725 1.02553 1.21081 0.96457 0.99897 0.92169 0.89050 1.21944 0.93482 1.01359 0.98968 1.22585 0.96212 1.00991 0.84336 1.48133 1.41897 1.34376 1.08831 1.17426 0.79332 0.79481 0.87004 1.90887 1.64025 1.56812 1.33429 1.19782 1.10552 0.93615 0.87284 1.20491 1.00978 0.96413 0.94383 1.22903 1.14241 1.00077 0.99839 1.84056 1.61439 1.14889 1.01495 1.25747 1.04955 0.95071 1.04524 1.19211 1.03630 1.02158 0.90702 1.18887 1.02894 0.90379 0.92667 1.42539 1.49331 1.14110 1.07763 0.71769 1.21599 0.94183 0.99116 0.85181 1.21648 0.93884 0.99978 0.95895 0.92632 1.20926 0.97714 0.94110 0.83941 1.42891 1.66015 1.29174 1.02727 1.19065 1.26561 1.06533 0.83659 0.91613 1.25315 1.02564 1.01907 0.94981 1.69839 1.52998 1.42370 0.97766 0.85613 0.79055 0.81040 0.77217 1.21073 1.19187 1.21619 0.93604 0.90180 0.93106 0.92590 0.86663 0.88100 0.87551 0.83941 0.77458 0.80756 0.92443 0.89518 0.94832 0.94314 0.80681 0.93284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 8.81 71.98 0.63 -2.12 16 2 C -0.08 -1.45 2.23 -10.77 -0.02 -1.47 16 3 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 4 C -0.12 -1.62 5.36 30.67 0.16 -1.45 16 5 C 0.08 1.08 5.28 86.36 0.46 1.54 16 6 N -0.60 -14.76 2.97 -823.85 -2.45 -17.21 16 7 C 0.58 17.57 7.61 86.38 0.66 18.22 16 8 O -0.57 -23.40 16.37 -4.44 -0.07 -23.47 16 9 C 0.00 0.04 6.34 40.14 0.25 0.30 16 10 C -0.09 -2.35 10.68 22.68 0.24 -2.11 16 11 C -0.25 -5.25 7.26 22.86 0.17 -5.09 16 12 S 0.12 1.82 23.31 -56.49 -1.32 0.51 16 13 C -0.17 -1.45 11.13 66.64 0.74 -0.71 16 14 C -0.12 -1.22 10.16 21.49 0.22 -1.00 16 15 C 0.07 1.17 7.67 38.40 0.29 1.46 16 16 N -0.53 -8.42 4.87 -177.15 -0.86 -9.28 16 17 H 0.44 4.04 6.39 -92.70 -0.59 3.45 16 18 C 0.12 3.67 5.53 86.36 0.48 4.15 16 19 C -0.09 -2.73 1.92 -10.72 -0.02 -2.75 16 20 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 21 C 0.16 5.92 5.41 86.38 0.47 6.39 16 22 N -0.76 -37.38 5.18 -343.46 -1.78 -39.16 16 23 C -0.23 -13.37 10.47 84.03 0.88 -12.49 16 24 H 0.07 4.13 8.06 -2.91 -0.02 4.11 16 25 C -0.06 -3.44 5.50 84.86 0.47 -2.97 16 26 N -0.98 -64.53 13.97 21.65 0.30 -64.23 16 27 Si 0.94 49.84 27.74 68.60 1.90 51.75 16 28 H -0.28 -15.02 7.11 99.48 0.71 -14.31 16 29 H -0.27 -13.49 6.52 99.48 0.65 -12.84 16 30 H -0.29 -15.18 7.11 99.48 0.71 -14.48 16 31 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.05 1.13 6.30 -2.38 -0.02 1.11 16 34 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.10 1.09 4.22 -2.39 -0.01 1.08 16 37 H 0.11 0.83 8.14 -2.38 -0.02 0.81 16 38 H 0.14 3.82 8.06 -2.91 -0.02 3.80 16 39 H 0.21 0.28 8.06 -2.91 -0.02 0.25 16 40 H 0.18 0.54 8.06 -2.91 -0.02 0.52 16 41 H 0.06 2.26 6.20 -2.39 -0.01 2.24 16 42 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 43 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.04 1.45 6.15 -2.39 -0.01 1.44 16 45 H 0.36 17.91 4.75 -92.71 -0.44 17.47 16 46 H 0.26 16.26 8.31 -92.71 -0.77 15.49 16 Total: -1.00 -82.28 374.34 1.74 -80.54 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: -0.06 Total: 20.64 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: 6.08 Total: -0.10 kcal Atomic # 7 Polarization: -125.08 SS G_CDS: -4.79 Total: -129.87 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: -0.07 Total: -23.47 kcal Atomic # 14 Polarization: 49.84 SS G_CDS: 1.90 Total: 51.75 kcal Atomic # 16 Polarization: 1.82 SS G_CDS: -1.32 Total: 0.51 kcal Total: -82.28 1.74 -80.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133217124.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.110 kcal (2) G-P(sol) polarization free energy of solvation -82.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds