Wall clock time and date at job start Wed Apr 1 2020 05:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.44609 * 2 1 4 4 C 1.53034 * 109.48418 * 240.04388 * 2 1 3 5 5 C 1.53193 * 109.33543 * 178.64627 * 4 2 1 6 6 N 1.46925 * 108.77622 * 54.62230 * 5 4 2 7 7 C 1.34778 * 120.62921 * 126.36827 * 6 5 4 8 8 O 1.21735 * 120.00060 * 179.78160 * 7 6 5 9 9 C 1.46455 * 120.00268 * 359.77830 * 7 6 5 10 10 C 1.37461 * 125.80658 * 210.20056 * 9 7 6 11 11 C 1.40660 * 107.55652 * 179.97438 * 10 9 7 12 12 S 1.76013 * 142.39599 * 179.97438 * 11 10 9 13 13 C 1.75599 * 91.31131 * 180.02562 * 12 11 10 14 14 C 1.32777 * 110.47106 * 0.02562 * 13 12 11 15 15 C 1.38248 * 108.03174 * 0.02562 * 11 10 9 16 16 N 1.37915 * 125.80114 * 29.89389 * 9 7 6 17 17 H 0.96998 * 125.69059 * 0.02562 * 16 9 7 18 18 C 1.46928 * 118.73907 * 306.39221 * 6 5 4 19 19 C 1.53046 * 109.45692 * 119.96291 * 2 1 3 20 20 H 1.08994 * 109.49596 * 61.39938 * 19 2 1 21 21 C 1.53005 * 109.49431 * 301.33545 * 19 2 1 22 22 N 1.46506 * 109.46727 * 175.06499 * 21 19 2 23 23 C 1.36939 * 120.00009 * 179.97438 * 22 21 19 24 24 H 1.07998 * 119.99665 * 0.02562 * 23 22 21 25 25 C 1.38810 * 119.99757 * 180.02562 * 23 22 21 26 26 N 1.31625 * 119.99491 * 180.02562 * 25 23 22 27 27 Si 1.86793 * 120.00274 * 359.72931 * 25 23 22 28 28 H 1.48504 * 109.47481 * 89.99771 * 27 25 23 29 29 H 1.48501 * 109.46992 * 210.00075 * 27 25 23 30 30 H 1.48498 * 109.47171 * 329.99623 * 27 25 23 31 31 H 1.08997 * 109.47097 * 300.03810 * 1 2 3 32 32 H 1.08997 * 109.47044 * 60.04003 * 1 2 3 33 33 H 1.09001 * 109.47326 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.49391 * 58.68551 * 4 2 1 35 35 H 1.08994 * 109.50389 * 298.61597 * 4 2 1 36 36 H 1.09005 * 109.58834 * 294.83576 * 5 4 2 37 37 H 1.08999 * 109.70170 * 174.48309 * 5 4 2 38 38 H 1.08002 * 126.22132 * 359.94759 * 10 9 7 39 39 H 1.08001 * 124.76386 * 180.02562 * 13 12 11 40 40 H 1.07992 * 122.15947 * 180.02562 * 14 13 12 41 41 H 1.08998 * 109.58293 * 293.81887 * 18 6 5 42 42 H 1.09001 * 109.58746 * 173.39581 * 18 6 5 43 43 H 1.08997 * 109.47391 * 55.07197 * 21 19 2 44 44 H 1.09002 * 109.47332 * 295.06604 * 21 19 2 45 45 H 0.96998 * 119.99891 * 0.02562 * 22 21 19 46 46 H 0.96994 * 119.99521 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0405 -0.7204 -1.2500 5 6 3.5721 -0.6889 -1.2637 6 7 4.0679 -1.2495 0.0006 7 6 4.9611 -2.2589 0.0007 8 8 5.3673 -2.7121 1.0550 9 6 5.4428 -2.8106 -1.2675 10 6 5.8416 -4.1088 -1.4800 11 6 6.2274 -4.2190 -2.8282 12 16 6.8439 -5.3653 -4.0130 13 6 6.8494 -4.1320 -5.2630 14 6 6.4157 -2.9754 -4.7762 15 6 6.0594 -2.9827 -3.4237 16 7 5.5678 -2.1174 -2.4532 17 1 5.3515 -1.1814 -2.5870 18 6 3.5713 -0.6892 1.2648 19 6 2.0399 -0.7207 1.2502 20 1 1.6973 -1.7554 1.2387 21 6 1.5027 -0.0187 2.4990 22 7 1.8929 -0.7761 3.6909 23 6 1.5225 -0.3359 4.9335 24 1 0.9423 0.5694 5.0349 25 6 1.8926 -1.0533 6.0628 26 7 1.5361 -0.6304 7.2572 27 14 2.8896 -2.6231 5.8869 28 1 4.3378 -2.2966 5.9238 29 1 2.5615 -3.5455 7.0034 30 1 2.5620 -3.2752 4.5936 31 1 -0.3633 0.5144 0.8896 32 1 -0.3633 0.5132 -0.8903 33 1 -0.3634 -1.0277 0.0005 34 1 1.6584 -0.2200 -2.1397 35 1 1.6980 -1.7551 -1.2390 36 1 3.9155 0.3405 -1.3666 37 1 3.9444 -1.2833 -2.0980 38 1 5.8565 -4.9003 -0.7452 39 1 7.1618 -4.2919 -6.2845 40 1 6.3420 -2.0867 -5.3853 41 1 3.9147 0.3401 1.3681 42 1 3.9412 -1.2854 2.0990 43 1 0.4156 0.0383 2.4446 44 1 1.9169 0.9880 2.5565 45 1 2.4143 -1.5889 3.5998 46 1 1.7951 -1.1314 8.0462 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133217125.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:28 Heat of formation + Delta-G solvation = 63.046175 kcal Electronic energy + Delta-G solvation = -28279.261817 eV Core-core repulsion = 24490.068701 eV Total energy + Delta-G solvation = -3789.193116 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 2.76 seconds Orbital eigenvalues (eV) -41.87099 -40.02500 -38.09442 -35.79008 -35.15432 -33.89528 -32.06114 -31.36384 -30.32355 -29.17200 -27.98436 -25.96165 -24.33870 -23.26876 -23.08815 -22.04894 -21.19534 -20.99795 -19.99702 -19.41416 -18.32196 -17.50343 -16.83648 -16.25995 -15.83583 -15.65398 -14.96317 -14.91819 -14.62707 -14.43953 -14.30436 -14.11206 -13.91121 -13.52782 -13.44904 -13.22784 -13.06020 -12.81424 -12.56002 -12.22055 -12.16523 -11.93033 -11.89506 -11.69310 -11.31710 -11.16185 -11.02905 -10.92993 -10.70986 -10.45767 -10.28407 -10.12622 -10.05069 -9.93573 -9.54052 -8.89981 -8.78999 -8.38648 -7.99353 -7.19816 -5.73607 -3.09346 0.45867 1.20796 1.69039 1.76123 2.40147 2.43066 2.70278 3.12268 3.45994 3.50822 3.54414 4.18988 4.38776 4.39901 4.61798 4.62987 4.64816 4.67254 4.90444 4.97830 5.01055 5.03568 5.18724 5.38991 5.41934 5.46431 5.50349 5.56943 5.60988 5.63368 5.65363 5.69013 5.76708 5.78428 5.93032 6.04170 6.13523 6.18186 6.25260 6.27147 6.30799 6.40781 6.67616 6.73001 6.90712 7.17057 7.92902 8.01522 8.45296 9.24159 9.97090 10.15985 11.44552 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.014821 B = 0.002771 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.816054 B =10101.909233 C =11572.564553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.083 4.083 3 H 0.074 0.926 4 C -0.126 4.126 5 C 0.085 3.915 6 N -0.605 5.605 7 C 0.581 3.419 8 O -0.513 6.513 9 C 0.020 3.980 10 C -0.078 4.078 11 C -0.214 4.214 12 S 0.132 5.868 13 C -0.191 4.191 14 C -0.114 4.114 15 C 0.056 3.944 16 N -0.543 5.543 17 H 0.422 0.578 18 C 0.119 3.881 19 C -0.107 4.107 20 H 0.075 0.925 21 C 0.163 3.837 22 N -0.757 5.757 23 C -0.245 4.245 24 H 0.090 0.910 25 C 0.006 3.994 26 N -0.934 5.934 27 Si 0.881 3.119 28 H -0.282 1.282 29 H -0.291 1.291 30 H -0.276 1.276 31 H 0.068 0.932 32 H 0.050 0.950 33 H 0.054 0.946 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.156 0.844 39 H 0.172 0.828 40 H 0.140 0.860 41 H 0.074 0.926 42 H 0.100 0.900 43 H 0.036 0.964 44 H 0.028 0.972 45 H 0.362 0.638 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.702 -2.723 -31.364 32.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.102 4.102 3 H 0.092 0.908 4 C -0.165 4.165 5 C -0.039 4.039 6 N -0.338 5.338 7 C 0.368 3.632 8 O -0.388 6.388 9 C -0.094 4.094 10 C -0.109 4.109 11 C -0.335 4.335 12 S 0.392 5.608 13 C -0.327 4.327 14 C -0.147 4.147 15 C -0.061 4.061 16 N -0.152 5.152 17 H 0.266 0.734 18 C -0.002 4.002 19 C -0.127 4.127 20 H 0.094 0.906 21 C 0.036 3.964 22 N -0.403 5.403 23 C -0.375 4.375 24 H 0.108 0.892 25 C -0.190 4.190 26 N -0.582 5.582 27 Si 0.711 3.289 28 H -0.208 1.208 29 H -0.217 1.217 30 H -0.202 1.202 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.173 0.827 39 H 0.190 0.810 40 H 0.158 0.842 41 H 0.092 0.908 42 H 0.119 0.881 43 H 0.054 0.946 44 H 0.045 0.955 45 H 0.195 0.805 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.166 -4.155 -30.560 31.904 hybrid contribution 0.182 0.880 -0.192 0.919 sum 8.348 -3.275 -30.752 32.033 Atomic orbital electron populations 1.21887 0.94590 1.02120 1.02002 1.21080 0.96294 0.99366 0.93496 0.90796 1.21954 0.93727 1.01992 0.98799 1.22250 0.96173 0.99225 0.86250 1.48121 1.42748 1.34838 1.08122 1.17071 0.79484 0.79590 0.87025 1.90934 1.57649 1.59193 1.30995 1.20306 1.10252 0.93004 0.85856 1.20408 1.02133 0.95033 0.93304 1.22690 1.14070 0.97421 0.99308 1.83984 1.67701 1.10628 0.98497 1.25242 1.07744 0.96103 1.03612 1.18875 1.04720 0.99697 0.91425 1.18415 1.06453 0.89694 0.91573 1.42736 1.53849 1.11619 1.06979 0.73407 1.21823 0.93985 0.99411 0.85022 1.21792 0.94183 1.01040 0.95639 0.90619 1.20703 0.97456 0.94071 0.84198 1.42776 1.66274 1.28657 1.02571 1.19021 1.28716 1.07922 0.81805 0.89236 1.24657 1.00562 0.98640 0.95117 1.69706 1.50754 1.40724 0.97020 0.86600 0.80797 0.84458 0.77019 1.20833 1.21712 1.20239 0.91339 0.93067 0.92700 0.90581 0.91206 0.90801 0.89570 0.82651 0.81045 0.84189 0.90789 0.88147 0.94592 0.95450 0.80533 0.93075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 8.82 37.16 0.33 -1.25 16 2 C -0.08 -0.90 2.23 -90.57 -0.20 -1.10 16 3 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 4 C -0.13 -1.10 5.36 -26.61 -0.14 -1.24 16 5 C 0.08 0.72 5.55 -3.71 -0.02 0.70 16 6 N -0.61 -7.69 2.97 -174.39 -0.52 -8.21 16 7 C 0.58 8.60 7.61 -12.95 -0.10 8.51 16 8 O -0.51 -9.82 16.41 5.16 0.08 -9.73 16 9 C 0.02 0.25 6.32 -82.10 -0.52 -0.27 16 10 C -0.08 -0.97 10.72 -38.95 -0.42 -1.39 16 11 C -0.21 -2.35 7.26 -38.66 -0.28 -2.63 16 12 S 0.13 1.11 23.31 -107.50 -2.51 -1.40 16 13 C -0.19 -1.24 11.13 28.86 0.32 -0.92 16 14 C -0.11 -0.81 10.16 -40.85 -0.42 -1.23 16 15 C 0.06 0.54 7.67 -84.00 -0.64 -0.10 16 16 N -0.54 -4.98 4.86 -7.34 -0.04 -5.01 16 17 H 0.42 2.71 6.49 -40.82 -0.27 2.45 16 18 C 0.12 1.80 5.52 -3.71 -0.02 1.78 16 19 C -0.11 -1.57 1.92 -90.50 -0.17 -1.75 16 20 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 21 C 0.16 3.03 5.41 -4.04 -0.02 3.01 16 22 N -0.76 -18.16 5.18 -59.90 -0.31 -18.47 16 23 C -0.24 -7.02 10.47 -15.06 -0.16 -7.18 16 24 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 25 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 26 N -0.93 -29.88 13.97 55.49 0.78 -29.10 16 27 Si 0.88 23.25 27.73 -169.99 -4.71 18.54 16 28 H -0.28 -7.47 7.11 56.52 0.40 -7.07 16 29 H -0.29 -7.71 7.11 56.52 0.40 -7.30 16 30 H -0.28 -7.02 6.53 56.52 0.37 -6.65 16 31 H 0.07 0.81 6.30 -51.93 -0.33 0.49 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.09 0.63 3.89 -51.93 -0.20 0.42 16 38 H 0.16 1.88 8.06 -52.49 -0.42 1.45 16 39 H 0.17 0.61 8.06 -52.49 -0.42 0.18 16 40 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 41 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.10 1.88 6.21 -51.93 -0.32 1.56 16 43 H 0.04 0.67 6.14 -51.93 -0.32 0.36 16 44 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.36 8.75 4.76 -40.82 -0.19 8.56 16 46 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 LS Contribution 374.43 15.07 5.64 5.64 Total: -1.00 -35.29 374.43 -10.44 -45.72 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -6.29 Total: 7.00 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: -2.56 Total: -4.99 kcal Atomic # 7 Polarization: -60.70 SS G_CDS: -0.09 Total: -60.79 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.08 Total: -9.73 kcal Atomic # 14 Polarization: 23.25 SS G_CDS: -4.71 Total: 18.54 kcal Atomic # 16 Polarization: 1.11 SS G_CDS: -2.51 Total: -1.40 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.29 -10.44 -45.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133217125.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.768 kcal (2) G-P(sol) polarization free energy of solvation -35.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.76 seconds