Wall clock time and date at job start Wed Apr 1 2020 05:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.44609 * 2 1 4 4 C 1.53034 * 109.48418 * 240.04388 * 2 1 3 5 5 C 1.53193 * 109.33543 * 178.64627 * 4 2 1 6 6 N 1.46925 * 108.77622 * 54.62230 * 5 4 2 7 7 C 1.34778 * 120.62921 * 126.36827 * 6 5 4 8 8 O 1.21735 * 120.00060 * 179.78160 * 7 6 5 9 9 C 1.46455 * 120.00268 * 359.77830 * 7 6 5 10 10 C 1.37461 * 125.80658 * 210.20056 * 9 7 6 11 11 C 1.40660 * 107.55652 * 179.97438 * 10 9 7 12 12 S 1.76013 * 142.39599 * 179.97438 * 11 10 9 13 13 C 1.75599 * 91.31131 * 180.02562 * 12 11 10 14 14 C 1.32777 * 110.47106 * 0.02562 * 13 12 11 15 15 C 1.38248 * 108.03174 * 0.02562 * 11 10 9 16 16 N 1.37915 * 125.80114 * 29.89389 * 9 7 6 17 17 H 0.96998 * 125.69059 * 0.02562 * 16 9 7 18 18 C 1.46928 * 118.73907 * 306.39221 * 6 5 4 19 19 C 1.53046 * 109.45692 * 119.96291 * 2 1 3 20 20 H 1.08994 * 109.49596 * 61.39938 * 19 2 1 21 21 C 1.53005 * 109.49431 * 301.33545 * 19 2 1 22 22 N 1.46506 * 109.46727 * 175.06499 * 21 19 2 23 23 C 1.36939 * 120.00009 * 179.97438 * 22 21 19 24 24 H 1.07998 * 119.99665 * 0.02562 * 23 22 21 25 25 C 1.38810 * 119.99757 * 180.02562 * 23 22 21 26 26 N 1.31625 * 119.99491 * 180.02562 * 25 23 22 27 27 Si 1.86793 * 120.00274 * 359.72931 * 25 23 22 28 28 H 1.48504 * 109.47481 * 89.99771 * 27 25 23 29 29 H 1.48501 * 109.46992 * 210.00075 * 27 25 23 30 30 H 1.48498 * 109.47171 * 329.99623 * 27 25 23 31 31 H 1.08997 * 109.47097 * 300.03810 * 1 2 3 32 32 H 1.08997 * 109.47044 * 60.04003 * 1 2 3 33 33 H 1.09001 * 109.47326 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.49391 * 58.68551 * 4 2 1 35 35 H 1.08994 * 109.50389 * 298.61597 * 4 2 1 36 36 H 1.09005 * 109.58834 * 294.83576 * 5 4 2 37 37 H 1.08999 * 109.70170 * 174.48309 * 5 4 2 38 38 H 1.08002 * 126.22132 * 359.94759 * 10 9 7 39 39 H 1.08001 * 124.76386 * 180.02562 * 13 12 11 40 40 H 1.07992 * 122.15947 * 180.02562 * 14 13 12 41 41 H 1.08998 * 109.58293 * 293.81887 * 18 6 5 42 42 H 1.09001 * 109.58746 * 173.39581 * 18 6 5 43 43 H 1.08997 * 109.47391 * 55.07197 * 21 19 2 44 44 H 1.09002 * 109.47332 * 295.06604 * 21 19 2 45 45 H 0.96998 * 119.99891 * 0.02562 * 22 21 19 46 46 H 0.96994 * 119.99521 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0405 -0.7204 -1.2500 5 6 3.5721 -0.6889 -1.2637 6 7 4.0679 -1.2495 0.0006 7 6 4.9611 -2.2589 0.0007 8 8 5.3673 -2.7121 1.0550 9 6 5.4428 -2.8106 -1.2675 10 6 5.8416 -4.1088 -1.4800 11 6 6.2274 -4.2190 -2.8282 12 16 6.8439 -5.3653 -4.0130 13 6 6.8494 -4.1320 -5.2630 14 6 6.4157 -2.9754 -4.7762 15 6 6.0594 -2.9827 -3.4237 16 7 5.5678 -2.1174 -2.4532 17 1 5.3515 -1.1814 -2.5870 18 6 3.5713 -0.6892 1.2648 19 6 2.0399 -0.7207 1.2502 20 1 1.6973 -1.7554 1.2387 21 6 1.5027 -0.0187 2.4990 22 7 1.8929 -0.7761 3.6909 23 6 1.5225 -0.3359 4.9335 24 1 0.9423 0.5694 5.0349 25 6 1.8926 -1.0533 6.0628 26 7 1.5361 -0.6304 7.2572 27 14 2.8896 -2.6231 5.8869 28 1 4.3378 -2.2966 5.9238 29 1 2.5615 -3.5455 7.0034 30 1 2.5620 -3.2752 4.5936 31 1 -0.3633 0.5144 0.8896 32 1 -0.3633 0.5132 -0.8903 33 1 -0.3634 -1.0277 0.0005 34 1 1.6584 -0.2200 -2.1397 35 1 1.6980 -1.7551 -1.2390 36 1 3.9155 0.3405 -1.3666 37 1 3.9444 -1.2833 -2.0980 38 1 5.8565 -4.9003 -0.7452 39 1 7.1618 -4.2919 -6.2845 40 1 6.3420 -2.0867 -5.3853 41 1 3.9147 0.3401 1.3681 42 1 3.9412 -1.2854 2.0990 43 1 0.4156 0.0383 2.4446 44 1 1.9169 0.9880 2.5565 45 1 2.4143 -1.5889 3.5998 46 1 1.7951 -1.1314 8.0462 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133217125.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:27 Heat of formation + Delta-G solvation = 39.813281 kcal Electronic energy + Delta-G solvation = -28280.269271 eV Core-core repulsion = 24490.068701 eV Total energy + Delta-G solvation = -3790.200570 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.70472 -41.02416 -39.25114 -36.93000 -36.27524 -35.17081 -33.74711 -32.36850 -31.78208 -30.05454 -28.96253 -27.41887 -25.21418 -24.73434 -23.94826 -22.99772 -22.63822 -21.81070 -21.10322 -20.21888 -19.68825 -19.07692 -17.76268 -17.27694 -16.76713 -16.66895 -16.50774 -15.95007 -15.78584 -15.55087 -15.31269 -15.08324 -14.99324 -14.78861 -14.62753 -14.41292 -14.17823 -14.13247 -13.85960 -13.44250 -13.27179 -12.93134 -12.84432 -12.73744 -12.69834 -12.52521 -12.26260 -12.07632 -11.91538 -11.85850 -11.74008 -11.52494 -11.32054 -11.15046 -11.01120 -10.76695 -9.89737 -9.31557 -9.12633 -8.68087 -8.07988 -5.39360 -0.25854 0.55111 0.82474 1.16275 1.31520 1.35412 1.39404 1.54590 1.73109 1.76963 2.17323 2.41406 3.24312 3.29922 3.48360 3.63202 3.75175 3.78955 3.90411 3.95878 3.96189 4.11001 4.23776 4.36796 4.39641 4.49589 4.51954 4.64003 4.70120 4.73129 4.74673 4.85353 4.89514 4.93511 5.01076 5.07031 5.08077 5.16355 5.18958 5.30384 5.37516 5.44030 5.52519 5.53886 5.72497 6.13571 6.17298 6.28344 6.83940 7.03157 7.80849 7.96837 9.13574 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.014821 B = 0.002771 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.816054 B =10101.909233 C =11572.564553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.077 4.077 3 H 0.091 0.909 4 C -0.120 4.120 5 C 0.079 3.921 6 N -0.598 5.598 7 C 0.578 3.422 8 O -0.572 6.572 9 C 0.004 3.996 10 C -0.095 4.095 11 C -0.250 4.250 12 S 0.122 5.878 13 C -0.168 4.168 14 C -0.124 4.124 15 C 0.070 3.930 16 N -0.528 5.528 17 H 0.436 0.564 18 C 0.121 3.879 19 C -0.094 4.094 20 H 0.056 0.944 21 C 0.159 3.841 22 N -0.762 5.762 23 C -0.227 4.227 24 H 0.066 0.934 25 C -0.056 4.056 26 N -0.979 5.979 27 Si 0.942 3.058 28 H -0.284 1.284 29 H -0.290 1.290 30 H -0.266 1.266 31 H 0.050 0.950 32 H 0.079 0.921 33 H 0.045 0.955 34 H 0.114 0.886 35 H 0.056 0.944 36 H 0.106 0.894 37 H 0.102 0.898 38 H 0.142 0.858 39 H 0.208 0.792 40 H 0.175 0.825 41 H 0.086 0.914 42 H 0.057 0.943 43 H 0.040 0.960 44 H 0.033 0.967 45 H 0.360 0.640 46 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.212 -1.896 -36.646 37.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.096 4.096 3 H 0.109 0.891 4 C -0.158 4.158 5 C -0.042 4.042 6 N -0.330 5.330 7 C 0.367 3.633 8 O -0.451 6.451 9 C -0.110 4.110 10 C -0.125 4.125 11 C -0.369 4.369 12 S 0.381 5.619 13 C -0.304 4.304 14 C -0.156 4.156 15 C -0.049 4.049 16 N -0.138 5.138 17 H 0.283 0.717 18 C -0.001 4.001 19 C -0.114 4.114 20 H 0.075 0.925 21 C 0.033 3.967 22 N -0.408 5.408 23 C -0.358 4.358 24 H 0.084 0.916 25 C -0.248 4.248 26 N -0.630 5.630 27 Si 0.771 3.229 28 H -0.211 1.211 29 H -0.216 1.216 30 H -0.191 1.191 31 H 0.069 0.931 32 H 0.098 0.902 33 H 0.064 0.936 34 H 0.133 0.867 35 H 0.075 0.925 36 H 0.124 0.876 37 H 0.120 0.880 38 H 0.160 0.840 39 H 0.225 0.775 40 H 0.192 0.808 41 H 0.104 0.896 42 H 0.076 0.924 43 H 0.057 0.943 44 H 0.051 0.949 45 H 0.193 0.807 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 8.641 -3.279 -35.926 37.096 hybrid contribution 0.006 0.667 1.292 1.454 sum 8.647 -2.612 -34.634 35.793 Atomic orbital electron populations 1.21868 0.94279 1.01749 1.02547 1.21081 0.96470 0.99881 0.92179 0.89115 1.21940 0.93514 1.01372 0.98939 1.22624 0.96222 1.00989 0.84401 1.48155 1.41844 1.34093 1.08874 1.17435 0.79301 0.79395 0.87206 1.90891 1.59899 1.61176 1.33183 1.19773 1.12084 0.93236 0.85908 1.20470 1.02598 0.95200 0.94279 1.22893 1.15665 0.99258 0.99125 1.84058 1.67640 1.11355 0.98849 1.25744 1.05556 0.94726 1.04333 1.19207 1.04834 1.01264 0.90341 1.18881 1.04734 0.88902 0.92414 1.42560 1.53313 1.12119 1.05777 0.71719 1.21597 0.94132 0.99188 0.85178 1.21650 0.93797 1.00040 0.95901 0.92527 1.20929 0.97747 0.94085 0.83928 1.42886 1.66104 1.29073 1.02733 1.19066 1.26634 1.06467 0.83661 0.91622 1.25323 1.02579 1.01914 0.94980 1.69843 1.52964 1.42399 0.97777 0.85610 0.79005 0.81056 0.77247 1.21087 1.21615 1.19123 0.93101 0.90200 0.93561 0.86728 0.92544 0.87605 0.88000 0.83984 0.77471 0.80763 0.89625 0.92405 0.94260 0.94873 0.80690 0.93288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 8.82 71.98 0.63 -2.11 16 2 C -0.08 -1.45 2.23 -10.76 -0.02 -1.47 16 3 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 4 C -0.12 -1.62 5.36 30.67 0.16 -1.46 16 5 C 0.08 1.07 5.55 86.36 0.48 1.55 16 6 N -0.60 -14.73 2.97 -823.84 -2.45 -17.18 16 7 C 0.58 17.54 7.61 86.38 0.66 18.19 16 8 O -0.57 -23.36 16.41 -4.46 -0.07 -23.44 16 9 C 0.00 0.10 6.32 40.14 0.25 0.35 16 10 C -0.09 -2.43 10.72 22.68 0.24 -2.18 16 11 C -0.25 -5.24 7.26 22.86 0.17 -5.08 16 12 S 0.12 1.83 23.31 -56.49 -1.32 0.51 16 13 C -0.17 -1.47 11.13 66.64 0.74 -0.72 16 14 C -0.12 -1.22 10.16 21.49 0.22 -1.00 16 15 C 0.07 1.15 7.67 38.40 0.29 1.45 16 16 N -0.53 -8.41 4.86 -177.14 -0.86 -9.27 16 17 H 0.44 4.02 6.49 -92.71 -0.60 3.42 16 18 C 0.12 3.68 5.52 86.36 0.48 4.15 16 19 C -0.09 -2.72 1.92 -10.71 -0.02 -2.74 16 20 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 21 C 0.16 5.92 5.41 86.38 0.47 6.38 16 22 N -0.76 -37.31 5.18 -343.43 -1.78 -39.09 16 23 C -0.23 -13.37 10.47 84.03 0.88 -12.49 16 24 H 0.07 4.12 8.06 -2.91 -0.02 4.10 16 25 C -0.06 -3.45 5.50 84.86 0.47 -2.99 16 26 N -0.98 -64.52 13.97 21.65 0.30 -64.22 16 27 Si 0.94 49.74 27.73 68.60 1.90 51.64 16 28 H -0.28 -15.02 7.11 99.48 0.71 -14.31 16 29 H -0.29 -15.15 7.11 99.48 0.71 -14.44 16 30 H -0.27 -13.38 6.53 99.48 0.65 -12.73 16 31 H 0.05 1.13 6.30 -2.39 -0.02 1.11 16 32 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.11 0.86 8.14 -2.38 -0.02 0.84 16 37 H 0.10 1.10 3.89 -2.39 -0.01 1.09 16 38 H 0.14 3.81 8.06 -2.91 -0.02 3.79 16 39 H 0.21 0.29 8.06 -2.91 -0.02 0.27 16 40 H 0.18 0.55 8.06 -2.91 -0.02 0.52 16 41 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 42 H 0.06 2.27 6.21 -2.39 -0.01 2.26 16 43 H 0.04 1.47 6.14 -2.39 -0.01 1.45 16 44 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.36 17.84 4.76 -92.71 -0.44 17.40 16 46 H 0.26 16.25 8.31 -92.71 -0.77 15.48 16 Total: -1.00 -82.18 374.43 1.75 -80.43 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: -0.07 Total: 20.77 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: 6.10 Total: -0.16 kcal Atomic # 7 Polarization: -124.97 SS G_CDS: -4.79 Total: -129.76 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.07 Total: -23.44 kcal Atomic # 14 Polarization: 49.74 SS G_CDS: 1.90 Total: 51.64 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -1.32 Total: 0.51 kcal Total: -82.18 1.75 -80.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133217125.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.246 kcal (2) G-P(sol) polarization free energy of solvation -82.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds