Wall clock time and date at job start Wed Apr 1 2020 05:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09006 * 109.45517 * 2 1 4 4 C 1.53039 * 109.44836 * 240.03423 * 2 1 3 5 5 C 1.52758 * 109.38482 * 301.22318 * 4 2 1 6 6 N 1.46928 * 109.00699 * 305.59082 * 5 4 2 7 7 C 1.34779 * 120.62898 * 233.58200 * 6 5 4 8 8 O 1.21731 * 119.99995 * 183.29781 * 7 6 5 9 9 C 1.46410 * 119.99769 * 3.02196 * 7 6 5 10 10 C 1.35783 * 124.95800 * 134.83097 * 9 7 6 11 11 C 1.38870 * 115.18710 * 179.82575 * 10 9 7 12 12 N 1.39739 * 139.91712 * 180.11729 * 11 10 9 13 13 H 0.96994 * 125.63152 * 0.30288 * 12 11 10 14 14 C 1.36217 * 108.73363 * 180.32267 * 12 11 10 15 15 C 1.34506 * 109.29669 * 359.97438 * 14 12 11 16 16 C 1.38251 * 113.39035 * 0.45120 * 11 10 9 17 17 S 1.75623 * 124.96004 * 315.13178 * 9 7 6 18 18 C 1.46925 * 118.74044 * 53.30979 * 6 5 4 19 19 C 1.53035 * 109.46146 * 119.97007 * 2 1 3 20 20 H 1.09001 * 109.49714 * 178.59425 * 19 2 1 21 21 C 1.53008 * 109.49940 * 298.69314 * 19 2 1 22 22 N 1.46497 * 109.46822 * 184.83711 * 21 19 2 23 23 C 1.36942 * 119.99407 * 179.97438 * 22 21 19 24 24 H 1.08000 * 120.00579 * 359.97438 * 23 22 21 25 25 C 1.38814 * 119.99706 * 180.02562 * 23 22 21 26 26 N 1.31621 * 120.00316 * 359.97438 * 25 23 22 27 27 Si 1.86805 * 120.00054 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.46992 * 59.99651 * 27 25 23 29 29 H 1.48500 * 109.46925 * 180.02562 * 27 25 23 30 30 H 1.48497 * 109.46620 * 299.99831 * 27 25 23 31 31 H 1.09001 * 109.47069 * 300.02518 * 1 2 3 32 32 H 1.08999 * 109.47409 * 60.02908 * 1 2 3 33 33 H 1.09001 * 109.46730 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.49663 * 61.30151 * 4 2 1 35 35 H 1.09002 * 109.49771 * 181.36233 * 4 2 1 36 36 H 1.08992 * 109.51130 * 185.70715 * 5 4 2 37 37 H 1.09005 * 109.42794 * 65.42405 * 5 4 2 38 38 H 1.08004 * 122.40508 * 0.02562 * 10 9 7 39 39 H 1.08001 * 125.35218 * 180.02562 * 14 12 11 40 40 H 1.08005 * 126.07186 * 180.02562 * 15 14 12 41 41 H 1.08998 * 109.58817 * 66.42433 * 18 6 5 42 42 H 1.09002 * 109.58882 * 186.85502 * 18 6 5 43 43 H 1.08999 * 109.46807 * 304.83706 * 21 19 2 44 44 H 1.08993 * 109.46860 * 64.83732 * 21 19 2 45 45 H 0.96994 * 120.00542 * 0.02562 * 22 21 19 46 46 H 0.96992 * 120.00361 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0396 -0.7208 -1.2502 5 6 1.5041 -2.1513 -1.2643 6 7 1.8621 -2.8089 -0.0001 7 6 2.5159 -3.9875 -0.0002 8 8 2.7539 -4.5516 1.0519 9 6 2.9344 -4.5923 -1.2662 10 6 4.1557 -5.1367 -1.5021 11 6 4.3341 -5.6582 -2.7767 12 7 5.3108 -6.3010 -3.5419 13 1 6.2019 -6.5358 -3.2391 14 6 4.8050 -6.5430 -4.7833 15 6 3.5429 -6.0823 -4.8465 16 6 3.2233 -5.5174 -3.5877 17 16 1.9325 -4.7129 -2.7036 18 6 1.4994 -2.1542 1.2642 19 6 2.0399 -0.7208 1.2500 20 1 3.1296 -0.7430 1.2381 21 6 1.5572 0.0194 2.4990 22 7 2.1397 -0.6024 3.6908 23 6 1.8487 -0.1061 4.9335 24 1 1.1902 0.7438 5.0350 25 6 2.4010 -0.6949 6.0627 26 7 3.2040 -1.7305 5.9391 27 14 2.0036 -0.0185 7.7580 28 1 0.5393 -0.0978 7.9918 29 1 2.7140 -0.8174 8.7887 30 1 2.4421 1.3978 7.8410 31 1 -0.3633 0.5142 0.8898 32 1 -0.3634 0.5134 -0.8902 33 1 -0.3633 -1.0277 0.0005 34 1 1.6955 -0.1934 -2.1398 35 1 3.1294 -0.7425 -1.2389 36 1 1.9458 -2.6972 -2.0979 37 1 0.4195 -2.1314 -1.3715 38 1 4.9316 -5.1650 -0.7513 39 1 5.3338 -7.0292 -5.5897 40 1 2.8893 -6.1339 -5.7049 41 1 0.4145 -2.1345 1.3674 42 1 1.9380 -2.7019 2.0984 43 1 1.8671 1.0630 2.4454 44 1 0.4700 -0.0343 2.5557 45 1 2.7320 -1.3651 3.5996 46 1 3.5902 -2.1417 6.7281 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133271593.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:32 Heat of formation + Delta-G solvation = 27.776982 kcal Electronic energy + Delta-G solvation = -28157.333935 eV Core-core repulsion = 24366.611432 eV Total energy + Delta-G solvation = -3790.722503 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.12041 -41.51438 -39.38329 -36.66850 -36.13655 -34.91520 -33.52368 -31.86999 -31.59034 -29.62307 -28.63498 -27.20700 -26.03252 -24.96532 -24.44560 -22.63189 -22.49886 -21.64374 -20.43199 -19.56251 -19.22992 -18.89454 -18.04586 -17.20644 -16.78438 -16.51586 -16.41761 -16.16136 -15.75285 -15.56834 -15.43390 -15.29628 -14.84686 -14.61316 -14.55173 -14.26306 -14.15851 -13.82110 -13.63194 -13.19726 -13.04896 -12.96652 -12.83688 -12.66132 -12.49655 -12.42626 -12.18226 -12.05386 -11.96632 -11.90295 -11.71598 -11.43339 -11.25039 -11.03960 -10.91805 -10.61515 -9.70446 -9.06267 -9.00514 -8.56738 -7.94214 -5.24800 -0.42755 0.31735 0.91752 1.41867 1.44474 1.49172 1.55283 1.67883 1.75635 2.04042 2.24711 2.55454 3.38385 3.41537 3.68721 3.78910 3.84342 3.95118 4.05345 4.14442 4.19279 4.22871 4.25997 4.37943 4.49886 4.56197 4.57030 4.67632 4.73434 4.77217 4.81262 4.90854 4.97254 5.00039 5.07202 5.10662 5.16831 5.25986 5.29993 5.39140 5.45430 5.48708 5.59465 5.60898 5.81787 6.25782 6.26777 6.61456 6.96230 7.31361 8.08225 8.30319 9.29213 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.016836 B = 0.002627 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.743730 B =10654.750653 C =11844.683158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.079 4.079 3 H 0.084 0.916 4 C -0.120 4.120 5 C 0.084 3.916 6 N -0.595 5.595 7 C 0.580 3.420 8 O -0.580 6.580 9 C -0.263 4.263 10 C -0.039 4.039 11 C -0.004 4.004 12 N -0.549 5.549 13 H 0.433 0.567 14 C 0.086 3.914 15 C -0.194 4.194 16 C -0.207 4.207 17 S 0.208 5.792 18 C 0.130 3.870 19 C -0.090 4.090 20 H 0.049 0.951 21 C 0.160 3.840 22 N -0.749 5.749 23 C -0.245 4.245 24 H 0.080 0.920 25 C -0.081 4.081 26 N -0.973 5.973 27 Si 0.978 3.022 28 H -0.275 1.275 29 H -0.298 1.298 30 H -0.274 1.274 31 H 0.051 0.949 32 H 0.083 0.917 33 H 0.053 0.947 34 H 0.115 0.885 35 H 0.057 0.943 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.135 0.865 39 H 0.226 0.774 40 H 0.168 0.832 41 H 0.078 0.922 42 H 0.051 0.949 43 H 0.026 0.974 44 H 0.033 0.967 45 H 0.369 0.631 46 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.382 -5.605 -32.178 32.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.098 4.098 3 H 0.103 0.897 4 C -0.158 4.158 5 C -0.038 4.038 6 N -0.326 5.326 7 C 0.368 3.632 8 O -0.462 6.462 9 C -0.383 4.383 10 C -0.075 4.075 11 C -0.117 4.117 12 N -0.151 5.151 13 H 0.273 0.727 14 C -0.049 4.049 15 C -0.223 4.223 16 C -0.330 4.330 17 S 0.472 5.528 18 C 0.007 3.993 19 C -0.109 4.109 20 H 0.068 0.932 21 C 0.034 3.966 22 N -0.392 5.392 23 C -0.377 4.377 24 H 0.098 0.902 25 C -0.273 4.273 26 N -0.624 5.624 27 Si 0.806 3.194 28 H -0.201 1.201 29 H -0.224 1.224 30 H -0.200 1.200 31 H 0.070 0.930 32 H 0.102 0.898 33 H 0.072 0.928 34 H 0.134 0.866 35 H 0.075 0.925 36 H 0.120 0.880 37 H 0.114 0.886 38 H 0.153 0.847 39 H 0.242 0.758 40 H 0.186 0.814 41 H 0.096 0.904 42 H 0.069 0.931 43 H 0.044 0.956 44 H 0.051 0.949 45 H 0.201 0.799 46 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -1.696 -5.356 -31.785 32.278 hybrid contribution 2.270 -0.743 2.368 3.363 sum 0.574 -6.099 -29.417 30.049 Atomic orbital electron populations 1.21971 0.93808 1.02106 1.02813 1.21077 0.97103 0.99398 0.92194 0.89723 1.21846 1.00711 0.94208 0.98992 1.22466 1.02226 0.94590 0.84543 1.48084 1.55939 1.19890 1.08729 1.17472 0.77337 0.80989 0.87405 1.90872 1.57701 1.63389 1.34203 1.23385 1.00799 1.14624 0.99468 1.19229 0.96683 0.96827 0.94770 1.17850 0.91682 1.08699 0.93446 1.42080 1.14139 1.48250 1.10587 0.72718 1.22707 0.94559 1.00333 0.87311 1.20553 0.97812 1.07998 0.95908 1.23800 0.98259 1.09882 1.01015 1.83479 1.13043 1.57460 0.98836 1.21474 0.99924 0.92895 0.84958 1.21554 0.99366 0.93937 0.96077 0.93199 1.20866 0.96110 0.94826 0.84804 1.42693 1.57069 1.37337 1.02058 1.19645 1.22501 1.10578 0.84958 0.90183 1.25682 1.00610 0.98987 1.02031 1.69867 1.37371 1.25955 1.29215 0.85146 0.77668 0.77480 0.79073 1.20137 1.22416 1.20027 0.93037 0.89841 0.92771 0.86646 0.92460 0.87981 0.88624 0.84728 0.75788 0.81425 0.90378 0.93073 0.95593 0.94947 0.79903 0.94159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 8.11 71.98 0.58 -2.46 16 2 C -0.08 -1.84 2.71 -10.77 -0.03 -1.87 16 3 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 4 C -0.12 -2.28 5.61 30.53 0.17 -2.11 16 5 C 0.08 1.79 5.35 86.22 0.46 2.26 16 6 N -0.60 -18.89 2.98 -824.72 -2.46 -21.34 16 7 C 0.58 21.32 7.51 86.37 0.65 21.97 16 8 O -0.58 -27.68 16.50 -4.45 -0.07 -27.75 16 9 C -0.26 -7.63 5.42 23.83 0.13 -7.50 16 10 C -0.04 -1.05 10.10 21.85 0.22 -0.83 16 11 C 0.00 -0.08 7.67 38.03 0.29 0.21 16 12 N -0.55 -6.80 6.21 -188.38 -1.17 -7.97 16 13 H 0.43 2.93 8.96 -92.71 -0.83 2.10 16 14 C 0.09 0.69 11.85 83.16 0.99 1.68 16 15 C -0.19 -2.49 10.84 22.25 0.24 -2.24 16 16 C -0.21 -4.10 7.31 23.11 0.17 -3.93 16 17 S 0.21 4.35 20.03 -56.49 -1.13 3.22 16 18 C 0.13 4.83 5.04 86.36 0.44 5.26 16 19 C -0.09 -3.08 2.15 -10.71 -0.02 -3.11 16 20 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 21 C 0.16 6.64 5.19 86.38 0.45 7.08 16 22 N -0.75 -40.87 5.38 -343.45 -1.85 -42.72 16 23 C -0.25 -14.41 9.99 84.03 0.84 -13.57 16 24 H 0.08 4.43 7.83 -2.91 -0.02 4.40 16 25 C -0.08 -4.95 5.50 84.86 0.47 -4.48 16 26 N -0.97 -64.18 13.06 21.65 0.28 -63.90 16 27 Si 0.98 48.42 29.55 68.60 2.03 50.45 16 28 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 29 H -0.30 -14.92 7.11 99.48 0.71 -14.21 16 30 H -0.27 -12.90 7.11 99.48 0.71 -12.20 16 31 H 0.05 1.18 6.57 -2.39 -0.02 1.17 16 32 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.05 1.14 4.99 -2.39 -0.01 1.13 16 34 H 0.12 1.38 8.14 -2.39 -0.02 1.37 16 35 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.10 1.99 4.01 -16.43 -0.07 1.92 16 37 H 0.10 1.68 6.70 -2.38 -0.02 1.66 16 38 H 0.13 3.70 8.06 -2.91 -0.02 3.67 16 39 H 0.23 -0.43 8.06 -2.91 -0.02 -0.45 16 40 H 0.17 1.34 8.06 -2.91 -0.02 1.31 16 41 H 0.08 2.73 6.69 -2.39 -0.02 2.71 16 42 H 0.05 2.46 6.22 -2.39 -0.01 2.44 16 43 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.03 1.30 6.72 -2.39 -0.02 1.29 16 45 H 0.37 22.21 6.89 -92.71 -0.64 21.57 16 46 H 0.25 15.98 8.31 -92.71 -0.77 15.21 16 Total: -1.00 -84.85 372.32 1.19 -83.67 By element: Atomic # 1 Polarization: 30.47 SS G_CDS: -0.49 Total: 29.99 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: 6.04 Total: -3.64 kcal Atomic # 7 Polarization: -130.74 SS G_CDS: -5.19 Total: -135.93 kcal Atomic # 8 Polarization: -27.68 SS G_CDS: -0.07 Total: -27.75 kcal Atomic # 14 Polarization: 48.42 SS G_CDS: 2.03 Total: 50.45 kcal Atomic # 16 Polarization: 4.35 SS G_CDS: -1.13 Total: 3.22 kcal Total: -84.85 1.19 -83.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133271593.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.443 kcal (2) G-P(sol) polarization free energy of solvation -84.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds