Wall clock time and date at job start Wed Apr 1 2020 05:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50698 * 119.99746 * 2 1 4 4 S 1.81001 * 109.47402 * 114.99919 * 3 2 1 5 5 C 1.76200 * 100.00348 * 180.02562 * 4 3 2 6 6 N 1.32502 * 119.83125 * 359.71946 * 5 4 3 7 7 C 1.31825 * 121.76718 * 179.74985 * 6 5 4 8 8 C 1.38405 * 121.22380 * 0.53921 * 7 6 5 9 9 C 1.38329 * 119.52524 * 359.73313 * 8 7 6 10 10 C 1.39972 * 118.37403 * 0.02562 * 9 8 7 11 11 C 1.47393 * 120.61358 * 180.02562 * 10 9 8 12 12 O 1.21610 * 120.00154 * 233.65059 * 11 10 9 13 13 N 1.34781 * 119.99871 * 53.65079 * 11 10 9 14 14 C 1.47076 * 120.87824 * 5.53641 * 13 11 10 15 15 C 1.53697 * 108.27715 * 128.75479 * 14 13 11 16 16 N 1.46901 * 109.25643 * 54.08282 * 15 14 13 17 17 C 1.46894 * 111.00093 * 172.60829 * 16 15 14 18 18 C 1.50692 * 109.47283 * 59.46382 * 17 16 15 19 19 H 1.08004 * 120.00065 * 355.05995 * 18 17 16 20 20 C 1.37885 * 120.00459 * 175.06484 * 18 17 16 21 21 N 1.31513 * 119.99297 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00316 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47298 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47322 * 119.99797 * 22 20 18 25 25 H 1.48506 * 109.47141 * 239.99857 * 22 20 18 26 26 C 1.46899 * 111.26719 * 296.75657 * 16 15 14 27 27 C 1.47077 * 120.88305 * 185.81506 * 13 11 10 28 28 H 1.08005 * 119.99142 * 180.02562 * 1 2 3 29 29 H 1.07994 * 120.00198 * 359.97438 * 1 2 3 30 30 H 1.08001 * 120.00453 * 179.97438 * 2 1 3 31 31 H 1.08995 * 109.47622 * 235.00076 * 3 2 1 32 32 H 1.08997 * 109.47196 * 355.00327 * 3 2 1 33 33 H 1.07995 * 119.38717 * 180.29684 * 7 6 5 34 34 H 1.07999 * 120.23477 * 179.76178 * 8 7 6 35 35 H 1.07995 * 120.81495 * 179.97438 * 9 8 7 36 36 H 1.09004 * 109.63183 * 248.52241 * 14 13 11 37 37 H 1.09000 * 109.63236 * 9.10025 * 14 13 11 38 38 H 1.08994 * 109.64860 * 294.07806 * 15 14 13 39 39 H 1.09007 * 109.42059 * 173.94071 * 15 14 13 40 40 H 1.09004 * 109.47047 * 179.46512 * 17 16 15 41 41 H 1.09000 * 109.47365 * 299.45836 * 17 16 15 42 42 H 0.97006 * 119.99280 * 180.02562 * 21 20 18 43 43 H 1.08999 * 109.49354 * 303.14401 * 26 16 15 44 44 H 1.08997 * 109.49384 * 183.06217 * 26 16 15 45 45 H 1.08998 * 109.62796 * 350.89765 * 27 13 11 46 46 H 1.08997 * 109.62972 * 111.47646 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 16 2.9897 1.4672 1.5466 5 6 3.7519 3.0339 1.2842 6 7 3.5318 3.6933 0.1561 7 6 4.0783 4.8699 -0.0780 8 6 4.9196 5.4666 0.8450 9 6 5.1894 4.8214 2.0384 10 6 4.5955 3.5753 2.2700 11 6 4.8486 2.8448 3.5250 12 8 5.2480 1.6967 3.4903 13 7 4.6373 3.4493 4.7109 14 6 4.0411 4.7921 4.7781 15 6 2.8621 4.7474 5.7631 16 7 3.3252 4.2090 7.0490 17 6 2.2755 4.3115 8.0714 18 6 1.0603 3.5416 7.6226 19 1 1.0368 3.0946 6.6397 20 6 -0.0218 3.4079 8.4667 21 7 0.0070 3.9520 9.6637 22 14 -1.5278 2.4530 7.9106 23 1 -1.3102 1.9439 6.5327 24 1 -1.7568 1.3101 8.8306 25 1 -2.7140 3.3463 7.9262 26 6 3.7908 2.8228 6.9097 27 6 5.0023 2.7861 5.9719 28 1 -0.5399 -0.9354 0.0004 29 1 -0.5400 0.9352 0.0004 30 1 1.8501 -0.9353 0.0004 31 1 2.7555 1.3252 -0.8418 32 1 1.3585 2.1316 -0.0895 33 1 3.8688 5.3757 -1.0088 34 1 5.3617 6.4293 0.6350 35 1 5.8431 5.2678 2.7732 36 1 4.7866 5.5068 5.1269 37 1 3.6840 5.0841 3.7905 38 1 2.0748 4.1082 5.3635 39 1 2.4736 5.7553 5.9095 40 1 2.6416 3.8973 9.0108 41 1 2.0095 5.3587 8.2154 42 1 -0.7542 3.8576 10.2576 43 1 2.9906 2.2103 6.4941 44 1 4.0760 2.4348 7.8875 45 1 5.2810 1.7512 5.7740 46 1 5.8384 3.3116 6.4333 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199735941.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:34 Heat of formation + Delta-G solvation = 37.059305 kcal Electronic energy + Delta-G solvation = -28282.337394 eV Core-core repulsion = 24492.017402 eV Total energy + Delta-G solvation = -3790.319991 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.75401 -39.27553 -37.45963 -34.99900 -34.53938 -33.04027 -32.27442 -31.74822 -30.52100 -28.19841 -27.64044 -25.65231 -24.46873 -24.10432 -23.10470 -22.30052 -20.74368 -20.22779 -19.06331 -18.04081 -17.36815 -16.87214 -16.31296 -16.13949 -15.83033 -15.35520 -14.97766 -14.75852 -14.57364 -14.43900 -14.29657 -13.99404 -13.83329 -13.67002 -13.39091 -13.34880 -12.73205 -12.65419 -12.30539 -12.21860 -11.87734 -11.46631 -11.17777 -11.12480 -11.02711 -10.89081 -10.70109 -10.63671 -10.34986 -10.22066 -10.16307 -9.93969 -9.91019 -9.69400 -9.57228 -9.43695 -8.48086 -8.46491 -7.65607 -7.29143 -6.07784 -4.16846 0.52162 0.86203 1.14961 1.91487 2.46278 2.65862 3.05126 3.24231 3.32867 3.37608 3.44257 4.18202 4.37913 4.46042 4.51724 4.56929 4.76481 4.78747 4.86909 4.90941 5.14701 5.17488 5.22614 5.29269 5.44708 5.51458 5.57162 5.61635 5.63787 5.67693 5.76063 5.85121 5.97148 6.06554 6.19979 6.31629 6.37606 6.41414 6.58284 6.69166 6.72546 7.17347 7.39651 7.46324 7.49937 7.84035 7.93809 8.14900 8.18974 8.22816 8.93175 9.50910 10.97469 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.008999 B = 0.003854 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3110.616911 B = 7263.891341 C = 9088.612139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.151 4.151 3 C -0.087 4.087 4 S -0.011 6.011 5 C 0.151 3.849 6 N -0.493 5.493 7 C 0.132 3.868 8 C -0.187 4.187 9 C -0.026 4.026 10 C -0.158 4.158 11 C 0.560 3.440 12 O -0.524 6.524 13 N -0.595 5.595 14 C 0.108 3.892 15 C 0.050 3.950 16 N -0.540 5.540 17 C 0.188 3.812 18 C -0.551 4.551 19 H 0.057 0.943 20 C 0.067 3.933 21 N -0.890 5.890 22 Si 0.886 3.114 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.283 1.283 26 C 0.050 3.950 27 C 0.116 3.884 28 H 0.105 0.895 29 H 0.100 0.900 30 H 0.118 0.882 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.162 0.838 34 H 0.143 0.857 35 H 0.144 0.856 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.045 0.955 39 H 0.078 0.922 40 H 0.036 0.964 41 H 0.030 0.970 42 H 0.262 0.738 43 H 0.044 0.956 44 H 0.079 0.921 45 H 0.089 0.911 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.561 1.643 -19.725 21.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.170 4.170 3 C -0.235 4.235 4 S 0.236 5.764 5 C -0.098 4.098 6 N -0.206 5.206 7 C -0.029 4.029 8 C -0.210 4.210 9 C -0.054 4.054 10 C -0.170 4.170 11 C 0.346 3.654 12 O -0.402 6.402 13 N -0.328 5.328 14 C -0.016 4.016 15 C -0.080 4.080 16 N -0.264 5.264 17 C 0.062 3.938 18 C -0.590 4.590 19 H 0.075 0.925 20 C -0.136 4.136 21 N -0.528 5.528 22 Si 0.714 3.286 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.209 1.209 26 C -0.079 4.079 27 C -0.006 4.006 28 H 0.123 0.877 29 H 0.118 0.882 30 H 0.136 0.864 31 H 0.119 0.881 32 H 0.113 0.887 33 H 0.179 0.821 34 H 0.161 0.839 35 H 0.162 0.838 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.063 0.937 39 H 0.097 0.903 40 H 0.054 0.946 41 H 0.048 0.952 42 H 0.072 0.928 43 H 0.063 0.937 44 H 0.098 0.902 45 H 0.107 0.893 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 8.536 0.070 -19.079 20.901 hybrid contribution -1.228 0.492 -0.871 1.584 sum 7.308 0.562 -19.950 21.254 Atomic orbital electron populations 1.23974 0.95603 1.02478 0.98457 1.22463 0.95920 0.96839 1.01813 1.22653 1.02372 0.99413 0.99082 1.86796 1.52120 1.14163 1.23356 1.23299 0.95851 0.99176 0.91424 1.68097 1.24406 1.09387 1.18736 1.22887 0.91138 0.90197 0.98714 1.21993 1.01754 1.02285 0.94986 1.21674 0.95411 0.91364 0.96927 1.20464 1.02668 0.97126 0.96777 1.17912 0.78394 0.86022 0.83041 1.90807 1.46243 1.16338 1.86762 1.48099 1.60619 1.18486 1.05609 1.22184 0.96451 0.82939 0.99980 1.22307 0.94292 1.00973 0.90378 1.62504 1.39183 1.17787 1.06953 1.19766 0.86925 0.97172 0.89901 1.21777 1.01374 1.34610 1.01238 0.92489 1.24940 0.98514 0.95386 0.94756 1.69949 1.31024 1.44370 1.07489 0.86622 0.83091 0.79948 0.78930 1.19769 1.20853 1.20904 1.22240 0.95422 0.91595 0.98665 1.21899 0.97958 0.98389 0.82378 0.87674 0.88159 0.86391 0.88148 0.88668 0.82066 0.83910 0.83780 0.90815 0.90586 0.93682 0.90318 0.94594 0.95237 0.92823 0.93748 0.90221 0.89254 0.91073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 14.32 29.01 0.42 -1.13 16 2 C -0.15 -1.56 9.52 -36.03 -0.34 -1.90 16 3 C -0.09 -1.00 5.28 36.00 0.19 -0.81 16 4 S -0.01 -0.16 20.30 -107.50 -2.18 -2.34 16 5 C 0.15 2.18 7.01 -16.37 -0.11 2.06 16 6 N -0.49 -6.12 9.13 -11.68 -0.11 -6.23 16 7 C 0.13 1.22 11.16 -17.49 -0.20 1.02 16 8 C -0.19 -1.54 10.09 -39.49 -0.40 -1.94 16 9 C -0.03 -0.27 7.96 -38.90 -0.31 -0.58 16 10 C -0.16 -2.22 4.63 -104.63 -0.48 -2.70 16 11 C 0.56 9.21 6.57 -12.53 -0.08 9.13 16 12 O -0.52 -10.06 15.48 5.27 0.08 -9.98 16 13 N -0.60 -9.39 3.00 -173.46 -0.52 -9.91 16 14 C 0.11 1.54 5.74 -3.37 -0.02 1.52 16 15 C 0.05 0.91 5.17 -3.46 -0.02 0.89 16 16 N -0.54 -10.96 4.83 -235.47 -1.14 -12.09 16 17 C 0.19 4.65 5.11 -4.98 -0.03 4.62 16 18 C -0.55 -14.84 7.76 -34.44 -0.27 -15.11 16 19 H 0.06 1.56 5.88 -52.48 -0.31 1.25 16 20 C 0.07 1.85 5.46 -17.82 -0.10 1.76 16 21 N -0.89 -25.73 13.29 55.43 0.74 -25.00 16 22 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 23 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 26 C 0.05 0.96 5.25 -3.70 -0.02 0.94 16 27 C 0.12 1.86 6.61 -3.60 -0.02 1.84 16 28 H 0.10 0.83 8.06 -52.48 -0.42 0.40 16 29 H 0.10 0.91 7.84 -52.49 -0.41 0.50 16 30 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 31 H 0.10 1.09 8.12 -51.92 -0.42 0.67 16 32 H 0.09 1.09 7.78 -51.92 -0.40 0.68 16 33 H 0.16 0.93 8.06 -52.49 -0.42 0.51 16 34 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 35 H 0.14 1.22 7.79 -52.49 -0.41 0.81 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.08 0.98 5.53 -51.93 -0.29 0.69 16 38 H 0.04 0.94 6.62 -51.93 -0.34 0.60 16 39 H 0.08 1.40 8.11 -51.93 -0.42 0.98 16 40 H 0.04 0.96 8.07 -51.93 -0.42 0.54 16 41 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 43 H 0.04 0.97 7.11 -51.93 -0.37 0.60 16 44 H 0.08 1.50 8.06 -51.93 -0.42 1.08 16 45 H 0.09 1.46 7.04 -51.93 -0.37 1.10 16 46 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 387.44 15.07 5.84 5.84 Total: -1.00 -32.19 387.44 -10.78 -42.97 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -6.67 Total: 0.75 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: -1.79 Total: -0.41 kcal Atomic # 7 Polarization: -52.20 SS G_CDS: -1.03 Total: -53.23 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.08 Total: -9.98 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -0.16 SS G_CDS: -2.18 Total: -2.34 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.19 -10.78 -42.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199735941.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.025 kcal (2) G-P(sol) polarization free energy of solvation -32.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds