Wall clock time and date at job start Wed Apr 1 2020 05:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50698 * 119.99746 * 2 1 4 4 S 1.81001 * 109.47402 * 114.99919 * 3 2 1 5 5 C 1.76200 * 100.00348 * 180.02562 * 4 3 2 6 6 N 1.32502 * 119.83125 * 359.71946 * 5 4 3 7 7 C 1.31825 * 121.76718 * 179.74985 * 6 5 4 8 8 C 1.38405 * 121.22380 * 0.53921 * 7 6 5 9 9 C 1.38329 * 119.52524 * 359.73313 * 8 7 6 10 10 C 1.39972 * 118.37403 * 0.02562 * 9 8 7 11 11 C 1.47393 * 120.61358 * 180.02562 * 10 9 8 12 12 O 1.21610 * 120.00154 * 233.65059 * 11 10 9 13 13 N 1.34781 * 119.99871 * 53.65079 * 11 10 9 14 14 C 1.47076 * 120.87824 * 5.53641 * 13 11 10 15 15 C 1.53697 * 108.27715 * 128.75479 * 14 13 11 16 16 N 1.46901 * 109.25643 * 54.08282 * 15 14 13 17 17 C 1.46894 * 111.00093 * 172.60829 * 16 15 14 18 18 C 1.50692 * 109.47283 * 59.46382 * 17 16 15 19 19 H 1.08004 * 120.00065 * 355.05995 * 18 17 16 20 20 C 1.37885 * 120.00459 * 175.06484 * 18 17 16 21 21 N 1.31513 * 119.99297 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00316 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47298 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47322 * 119.99797 * 22 20 18 25 25 H 1.48506 * 109.47141 * 239.99857 * 22 20 18 26 26 C 1.46899 * 111.26719 * 296.75657 * 16 15 14 27 27 C 1.47077 * 120.88305 * 185.81506 * 13 11 10 28 28 H 1.08005 * 119.99142 * 180.02562 * 1 2 3 29 29 H 1.07994 * 120.00198 * 359.97438 * 1 2 3 30 30 H 1.08001 * 120.00453 * 179.97438 * 2 1 3 31 31 H 1.08995 * 109.47622 * 235.00076 * 3 2 1 32 32 H 1.08997 * 109.47196 * 355.00327 * 3 2 1 33 33 H 1.07995 * 119.38717 * 180.29684 * 7 6 5 34 34 H 1.07999 * 120.23477 * 179.76178 * 8 7 6 35 35 H 1.07995 * 120.81495 * 179.97438 * 9 8 7 36 36 H 1.09004 * 109.63183 * 248.52241 * 14 13 11 37 37 H 1.09000 * 109.63236 * 9.10025 * 14 13 11 38 38 H 1.08994 * 109.64860 * 294.07806 * 15 14 13 39 39 H 1.09007 * 109.42059 * 173.94071 * 15 14 13 40 40 H 1.09004 * 109.47047 * 179.46512 * 17 16 15 41 41 H 1.09000 * 109.47365 * 299.45836 * 17 16 15 42 42 H 0.97006 * 119.99280 * 180.02562 * 21 20 18 43 43 H 1.08999 * 109.49354 * 303.14401 * 26 16 15 44 44 H 1.08997 * 109.49384 * 183.06217 * 26 16 15 45 45 H 1.08998 * 109.62796 * 350.89765 * 27 13 11 46 46 H 1.08997 * 109.62972 * 111.47646 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 16 2.9897 1.4672 1.5466 5 6 3.7519 3.0339 1.2842 6 7 3.5318 3.6933 0.1561 7 6 4.0783 4.8699 -0.0780 8 6 4.9196 5.4666 0.8450 9 6 5.1894 4.8214 2.0384 10 6 4.5955 3.5753 2.2700 11 6 4.8486 2.8448 3.5250 12 8 5.2480 1.6967 3.4903 13 7 4.6373 3.4493 4.7109 14 6 4.0411 4.7921 4.7781 15 6 2.8621 4.7474 5.7631 16 7 3.3252 4.2090 7.0490 17 6 2.2755 4.3115 8.0714 18 6 1.0603 3.5416 7.6226 19 1 1.0368 3.0946 6.6397 20 6 -0.0218 3.4079 8.4667 21 7 0.0070 3.9520 9.6637 22 14 -1.5278 2.4530 7.9106 23 1 -1.3102 1.9439 6.5327 24 1 -1.7568 1.3101 8.8306 25 1 -2.7140 3.3463 7.9262 26 6 3.7908 2.8228 6.9097 27 6 5.0023 2.7861 5.9719 28 1 -0.5399 -0.9354 0.0004 29 1 -0.5400 0.9352 0.0004 30 1 1.8501 -0.9353 0.0004 31 1 2.7555 1.3252 -0.8418 32 1 1.3585 2.1316 -0.0895 33 1 3.8688 5.3757 -1.0088 34 1 5.3617 6.4293 0.6350 35 1 5.8431 5.2678 2.7732 36 1 4.7866 5.5068 5.1269 37 1 3.6840 5.0841 3.7905 38 1 2.0748 4.1082 5.3635 39 1 2.4736 5.7553 5.9095 40 1 2.6416 3.8973 9.0108 41 1 2.0095 5.3587 8.2154 42 1 -0.7542 3.8576 10.2576 43 1 2.9906 2.2103 6.4941 44 1 4.0760 2.4348 7.8875 45 1 5.2810 1.7512 5.7740 46 1 5.8384 3.3116 6.4333 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199735941.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:33 Heat of formation + Delta-G solvation = 16.305646 kcal Electronic energy + Delta-G solvation = -28283.237340 eV Core-core repulsion = 24492.017402 eV Total energy + Delta-G solvation = -3791.219938 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.80693 -40.39418 -38.95200 -36.10593 -35.81599 -34.47836 -33.75694 -32.68533 -31.83736 -29.89805 -28.50572 -27.35082 -25.67437 -25.00263 -24.45194 -23.94060 -22.14779 -21.10471 -20.37590 -19.02040 -18.65487 -18.24617 -17.78966 -17.30280 -16.77538 -16.74717 -16.22360 -16.13774 -16.03018 -15.59244 -15.43566 -15.22382 -15.07529 -14.99140 -14.64302 -14.29295 -14.15164 -13.76826 -13.60725 -13.51174 -13.15450 -13.01090 -12.95952 -12.58422 -12.52534 -12.25791 -12.25525 -12.02425 -11.88740 -11.82440 -11.65223 -11.21171 -11.05927 -10.82123 -10.64964 -10.61286 -10.31965 -9.81105 -9.09547 -8.71770 -8.20160 -6.38220 -0.35488 0.06618 0.21670 0.99662 1.30314 1.33240 1.43947 1.46683 1.63508 1.89050 2.33249 2.59073 3.05512 3.20651 3.28800 3.57649 3.75446 3.78965 3.92937 3.94628 3.99576 4.05933 4.15483 4.28418 4.32499 4.35193 4.44978 4.48838 4.59885 4.62729 4.71250 4.84413 4.87749 4.89726 5.01727 5.04238 5.13934 5.19120 5.30619 5.40751 5.51683 5.54423 5.63139 5.70834 5.97018 6.13114 6.30131 6.41075 6.60389 6.81657 6.95698 7.33214 8.82541 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.008999 B = 0.003854 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3110.616911 B = 7263.891341 C = 9088.612139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.169 4.169 3 C -0.061 4.061 4 S -0.094 6.094 5 C 0.138 3.862 6 N -0.507 5.507 7 C 0.130 3.870 8 C -0.164 4.164 9 C -0.027 4.027 10 C -0.183 4.183 11 C 0.560 3.440 12 O -0.561 6.561 13 N -0.599 5.599 14 C 0.121 3.879 15 C 0.050 3.950 16 N -0.530 5.530 17 C 0.201 3.799 18 C -0.557 4.557 19 H 0.046 0.954 20 C 0.019 3.981 21 N -0.920 5.920 22 Si 0.947 3.053 23 H -0.276 1.276 24 H -0.277 1.277 25 H -0.273 1.273 26 C 0.055 3.945 27 C 0.126 3.874 28 H 0.122 0.878 29 H 0.103 0.897 30 H 0.122 0.878 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.201 0.799 34 H 0.189 0.811 35 H 0.168 0.832 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.011 0.989 39 H 0.084 0.916 40 H 0.012 0.988 41 H 0.013 0.987 42 H 0.266 0.734 43 H 0.009 0.991 44 H 0.078 0.922 45 H 0.084 0.916 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.192 3.757 -22.080 24.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.188 4.188 3 C -0.209 4.209 4 S 0.152 5.848 5 C -0.110 4.110 6 N -0.220 5.220 7 C -0.031 4.031 8 C -0.186 4.186 9 C -0.054 4.054 10 C -0.195 4.195 11 C 0.348 3.652 12 O -0.441 6.441 13 N -0.331 5.331 14 C -0.001 4.001 15 C -0.079 4.079 16 N -0.254 5.254 17 C 0.074 3.926 18 C -0.596 4.596 19 H 0.064 0.936 20 C -0.181 4.181 21 N -0.560 5.560 22 Si 0.773 3.227 23 H -0.201 1.201 24 H -0.203 1.203 25 H -0.198 1.198 26 C -0.074 4.074 27 C 0.004 3.996 28 H 0.141 0.859 29 H 0.121 0.879 30 H 0.140 0.860 31 H 0.121 0.879 32 H 0.112 0.888 33 H 0.218 0.782 34 H 0.207 0.793 35 H 0.186 0.814 36 H 0.124 0.876 37 H 0.114 0.886 38 H 0.029 0.971 39 H 0.103 0.897 40 H 0.030 0.970 41 H 0.032 0.968 42 H 0.075 0.925 43 H 0.027 0.973 44 H 0.096 0.904 45 H 0.102 0.898 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 9.177 2.207 -21.445 23.430 hybrid contribution -1.419 -0.073 -0.230 1.440 sum 7.757 2.134 -21.676 23.121 Atomic orbital electron populations 1.24189 0.95297 1.03475 0.96580 1.22536 0.96387 0.96587 1.03299 1.22538 1.01698 0.99914 0.96723 1.86958 1.54091 1.16863 1.26869 1.23051 0.96782 0.98680 0.92492 1.68091 1.25177 1.10764 1.17959 1.23683 0.90119 0.89018 1.00291 1.22501 0.99776 1.03231 0.93098 1.22035 0.94989 0.89877 0.98468 1.20398 1.04584 0.98859 0.95697 1.18328 0.77356 0.85625 0.83855 1.90775 1.47895 1.18051 1.87358 1.48178 1.60596 1.18986 1.05361 1.22188 0.95391 0.82789 0.99747 1.22371 0.95458 1.00189 0.89930 1.62456 1.37239 1.18409 1.07285 1.19439 0.87381 0.95460 0.90296 1.21958 1.02349 1.34505 1.00749 0.93565 1.25672 1.01257 0.96303 0.94854 1.70039 1.32035 1.45522 1.08402 0.85668 0.79973 0.78843 0.78199 1.20119 1.20252 1.19817 1.22204 0.95690 0.90223 0.99290 1.21743 0.96831 0.98860 0.82164 0.85943 0.87887 0.85973 0.87863 0.88807 0.78230 0.79337 0.81443 0.87647 0.88623 0.97105 0.89728 0.97007 0.96849 0.92494 0.97304 0.90374 0.89796 0.88487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 14.32 67.78 0.97 -1.82 16 2 C -0.17 -3.51 9.52 25.65 0.24 -3.27 16 3 C -0.06 -1.43 5.28 71.24 0.38 -1.06 16 4 S -0.09 -2.94 20.30 -56.49 -1.15 -4.09 16 5 C 0.14 3.93 7.01 85.17 0.60 4.52 16 6 N -0.51 -11.68 9.13 -190.87 -1.74 -13.42 16 7 C 0.13 1.87 11.16 84.73 0.95 2.82 16 8 C -0.16 -1.86 10.09 22.33 0.23 -1.64 16 9 C -0.03 -0.46 7.96 22.71 0.18 -0.28 16 10 C -0.18 -4.93 4.63 -19.87 -0.09 -5.02 16 11 C 0.56 18.42 6.57 86.65 0.57 18.99 16 12 O -0.56 -22.27 15.48 -4.06 -0.06 -22.33 16 13 N -0.60 -18.48 3.00 -820.96 -2.47 -20.95 16 14 C 0.12 3.22 5.74 86.50 0.50 3.71 16 15 C 0.05 1.81 5.17 86.54 0.45 2.26 16 16 N -0.53 -21.82 4.83 -898.90 -4.34 -26.16 16 17 C 0.20 10.27 5.11 85.56 0.44 10.71 16 18 C -0.56 -30.96 7.76 25.60 0.20 -30.76 16 19 H 0.05 2.64 5.88 -2.91 -0.02 2.62 16 20 C 0.02 1.08 5.46 84.66 0.46 1.54 16 21 N -0.92 -54.12 13.29 21.45 0.28 -53.84 16 22 Si 0.95 44.69 29.54 68.60 2.03 46.72 16 23 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 24 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 25 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 26 C 0.06 2.18 5.25 86.38 0.45 2.63 16 27 C 0.13 4.05 6.61 86.35 0.57 4.62 16 28 H 0.12 1.76 8.06 -2.91 -0.02 1.74 16 29 H 0.10 1.78 7.84 -2.91 -0.02 1.76 16 30 H 0.12 2.39 8.06 -2.91 -0.02 2.36 16 31 H 0.10 2.27 8.12 -2.40 -0.02 2.25 16 32 H 0.09 2.16 7.78 -2.40 -0.02 2.14 16 33 H 0.20 1.24 8.06 -2.91 -0.02 1.21 16 34 H 0.19 0.48 8.06 -2.91 -0.02 0.46 16 35 H 0.17 2.04 7.79 -2.91 -0.02 2.02 16 36 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.10 2.22 5.53 -2.39 -0.01 2.20 16 38 H 0.01 0.46 6.62 -2.39 -0.02 0.45 16 39 H 0.08 2.96 8.11 -2.38 -0.02 2.94 16 40 H 0.01 0.65 8.07 -2.39 -0.02 0.63 16 41 H 0.01 0.72 8.14 -2.39 -0.02 0.71 16 42 H 0.27 14.71 8.31 -92.70 -0.77 13.94 16 43 H 0.01 0.40 7.11 -2.39 -0.02 0.38 16 44 H 0.08 3.05 8.06 -2.39 -0.02 3.03 16 45 H 0.08 2.81 7.04 -2.39 -0.02 2.80 16 46 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 Total: -1.00 -74.32 387.44 0.61 -73.71 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: 0.98 Total: 12.39 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: 7.08 Total: 7.98 kcal Atomic # 7 Polarization: -106.11 SS G_CDS: -8.26 Total: -114.37 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -0.06 Total: -22.33 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Atomic # 16 Polarization: -2.94 SS G_CDS: -1.15 Total: -4.09 kcal Total: -74.32 0.61 -73.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199735941.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.015 kcal (2) G-P(sol) polarization free energy of solvation -74.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds