Wall clock time and date at job start Wed Apr 1 2020 05:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 F 1.39900 * 109.46867 * 2 1 4 4 F 1.39902 * 109.46987 * 240.00303 * 2 1 3 5 5 C 1.50693 * 109.47362 * 120.00210 * 2 1 3 6 6 O 1.21285 * 120.00003 * 334.99957 * 5 2 1 7 7 N 1.34779 * 120.00144 * 155.00208 * 5 2 1 8 8 C 1.45815 * 117.47170 * 359.86780 * 7 5 2 9 9 C 1.53283 * 109.09084 * 156.32726 * 8 7 5 10 10 O 1.43187 * 107.35130 * 52.15391 * 9 8 7 11 11 C 1.42281 * 114.05022 * 289.46221 * 10 9 8 12 12 H 1.09003 * 109.78459 * 289.33684 * 11 10 9 13 13 C 1.54005 * 108.97939 * 169.06651 * 11 10 9 14 14 N 1.47338 * 107.42528 * 235.27876 * 13 11 10 15 15 C 1.46903 * 111.00150 * 142.17478 * 14 13 11 16 16 C 1.50701 * 109.46635 * 69.87834 * 15 14 13 17 17 O 1.21293 * 120.00114 * 359.97438 * 16 15 14 18 18 N 1.34782 * 120.00056 * 179.97438 * 16 15 14 19 19 C 1.37091 * 120.00353 * 180.02562 * 18 16 15 20 20 H 1.08010 * 119.99700 * 359.97438 * 19 18 16 21 21 C 1.38944 * 120.00212 * 180.02562 * 19 18 16 22 22 N 1.31410 * 120.00112 * 359.97438 * 21 19 18 23 23 Si 1.86809 * 120.00046 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47272 * 89.99464 * 23 21 19 25 25 H 1.48497 * 109.46862 * 209.99747 * 23 21 19 26 26 H 1.48499 * 109.46761 * 329.99713 * 23 21 19 27 27 C 1.47680 * 107.62252 * 20.52937 * 14 13 11 28 28 C 1.44217 * 117.51664 * 180.02562 * 7 5 2 29 29 H 1.09006 * 107.95682 * 307.84402 * 28 7 5 30 30 H 1.08998 * 109.46729 * 299.99505 * 1 2 3 31 31 H 1.08992 * 109.47143 * 59.99775 * 1 2 3 32 32 H 1.09005 * 109.46815 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.50621 * 36.49460 * 8 7 5 34 34 H 1.08997 * 109.66257 * 276.25976 * 8 7 5 35 35 H 1.09002 * 109.89514 * 292.66939 * 9 8 7 36 36 H 1.09003 * 109.89317 * 171.63575 * 9 8 7 37 37 H 1.09006 * 109.85274 * 354.74282 * 13 11 10 38 38 H 1.09002 * 109.86118 * 115.81029 * 13 11 10 39 39 H 1.08993 * 109.47238 * 189.87140 * 15 14 13 40 40 H 1.08996 * 109.47557 * 309.88210 * 15 14 13 41 41 H 0.96999 * 119.99594 * 359.97438 * 18 16 15 42 42 H 0.97001 * 119.99965 * 180.02562 * 22 21 19 43 43 H 1.09003 * 110.24908 * 89.76236 * 27 14 13 44 44 H 1.09002 * 110.24745 * 211.67182 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6594 -1.1423 5 6 2.0324 -0.7104 1.2304 6 8 1.3370 -0.7706 2.2223 7 7 3.2544 -1.2789 1.2286 8 6 4.0423 -1.1760 0.0059 9 6 5.5281 -1.3222 0.3533 10 8 5.6708 -2.5212 1.1229 11 6 5.1247 -2.4371 2.4340 12 1 5.7393 -1.7790 3.0482 13 6 5.0904 -3.8466 3.0536 14 7 3.7022 -4.1120 3.4698 15 6 3.3372 -5.5133 3.2227 16 6 4.0875 -6.4039 4.1793 17 8 4.8514 -5.9190 4.9870 18 7 3.9096 -7.7393 4.1373 19 6 4.5917 -8.5494 5.0078 20 1 5.2720 -8.1176 5.7271 21 6 4.4087 -9.9261 4.9641 22 7 3.5815 -10.4515 4.0886 23 14 5.3388 -11.0300 6.1499 24 1 4.5385 -11.2126 7.3874 25 1 5.5756 -12.3509 5.5140 26 1 6.6415 -10.4039 6.4907 27 6 2.8256 -3.1955 2.7130 28 6 3.6811 -1.9452 2.4343 29 1 3.5543 -1.2507 3.2649 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 3.8707 -0.2043 -0.4570 34 1 3.7508 -1.9662 -0.6859 35 1 5.8583 -0.4641 0.9388 36 1 6.1172 -1.3959 -0.5609 37 1 5.4026 -4.5839 2.3139 38 1 5.7507 -3.8864 3.9200 39 1 2.2652 -5.6413 3.3721 40 1 3.5959 -5.7810 2.1983 41 1 3.2984 -8.1270 3.4915 42 1 3.4535 -11.4126 4.0584 43 1 2.5160 -3.6577 1.7757 44 1 1.9521 -2.9310 3.3090 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001217180096.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:04 Heat of formation + Delta-G solvation = -174.206248 kcal Electronic energy + Delta-G solvation = -32018.375628 eV Core-core repulsion = 27221.912074 eV Total energy + Delta-G solvation = -4796.463554 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.149 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.82084 -47.72835 -41.31501 -39.29340 -38.32145 -36.76935 -35.58943 -33.88250 -32.22456 -31.78520 -31.14808 -29.09482 -28.79430 -26.85071 -25.10303 -24.12680 -23.81280 -21.73614 -21.17107 -19.94010 -19.13687 -18.54296 -18.28059 -17.91775 -17.62559 -16.96848 -16.53086 -16.07712 -16.01072 -15.75544 -15.26480 -15.05147 -14.71563 -14.46747 -14.30751 -14.21849 -14.04094 -13.83228 -13.63993 -13.39805 -13.37143 -13.17697 -13.02399 -12.88954 -12.55738 -12.39867 -12.13669 -11.94463 -11.74695 -11.49164 -11.46593 -11.23955 -10.96710 -10.84170 -10.54189 -10.37970 -10.20154 -9.92525 -9.47903 -9.19199 -8.50706 -8.00476 -7.93133 -6.39617 -3.80310 1.63455 1.96833 3.01082 3.19465 3.27898 3.33567 3.34877 3.38218 3.76932 3.92166 4.02532 4.03908 4.16117 4.27127 4.34990 4.35935 4.66057 4.70276 4.89973 4.93892 5.01833 5.05783 5.16443 5.19042 5.25753 5.26363 5.38691 5.40436 5.59033 5.73240 5.77114 5.85192 5.91764 5.98705 6.27822 6.29702 6.51321 6.80368 7.09868 7.11985 7.31788 7.57216 8.07936 8.63747 9.20146 9.56369 10.08066 10.78267 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.022067 B = 0.002383 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.560344 B =11745.119640 C =12241.501020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.283 3.717 3 F -0.182 7.182 4 F -0.186 7.186 5 C 0.478 3.522 6 O -0.489 6.489 7 N -0.578 5.578 8 C 0.066 3.934 9 C 0.048 3.952 10 O -0.366 6.366 11 C 0.080 3.920 12 H 0.082 0.918 13 C 0.058 3.942 14 N -0.492 5.492 15 C 0.041 3.959 16 C 0.446 3.554 17 O -0.577 6.577 18 N -0.565 5.565 19 C -0.297 4.297 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.903 5.903 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.270 1.270 27 C 0.037 3.963 28 C 0.112 3.888 29 H 0.098 0.902 30 H 0.102 0.898 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.063 0.937 36 H 0.115 0.885 37 H 0.063 0.937 38 H 0.108 0.892 39 H 0.091 0.909 40 H 0.052 0.948 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.046 0.954 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.508 21.900 -13.721 26.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.243 3.757 3 F -0.163 7.163 4 F -0.167 7.167 5 C 0.260 3.740 6 O -0.362 6.362 7 N -0.311 5.311 8 C -0.056 4.056 9 C -0.029 4.029 10 O -0.284 6.284 11 C 0.021 3.979 12 H 0.100 0.900 13 C -0.070 4.070 14 N -0.217 5.217 15 C -0.091 4.091 16 C 0.231 3.769 17 O -0.461 6.461 18 N -0.202 5.202 19 C -0.427 4.427 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.757 3.243 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.194 1.194 27 C -0.092 4.092 28 C 0.007 3.993 29 H 0.116 0.884 30 H 0.121 0.879 31 H 0.110 0.890 32 H 0.114 0.886 33 H 0.111 0.889 34 H 0.106 0.894 35 H 0.081 0.919 36 H 0.132 0.868 37 H 0.081 0.919 38 H 0.126 0.874 39 H 0.109 0.891 40 H 0.070 0.930 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.064 0.936 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.291 21.885 -12.205 25.273 hybrid contribution 0.055 -0.733 -0.954 1.204 sum -3.236 21.152 -13.159 25.121 Atomic orbital electron populations 1.22644 0.88406 1.06609 1.06307 1.21321 0.96070 0.76061 0.82216 1.93089 1.90499 1.36118 1.96577 1.93064 1.90117 1.80609 1.52884 1.20915 0.82650 0.80988 0.89432 1.90809 1.55053 1.57609 1.32741 1.47056 1.16174 1.53501 1.14361 1.22641 0.93162 1.03853 0.85965 1.23029 0.94067 0.88587 0.97229 1.88042 1.79366 1.35269 1.25758 1.22903 0.90939 0.99516 0.84569 0.90028 1.22873 0.91894 0.92343 0.99886 1.63631 1.01592 1.03305 1.53175 1.22105 1.01040 0.87953 0.97974 1.19654 0.86770 0.82925 0.87584 1.90507 1.40304 1.74369 1.40887 1.41846 1.40408 1.04419 1.33505 1.19693 1.21929 0.87585 1.13480 0.87897 1.25256 0.97423 0.97380 0.97920 1.69613 1.36302 1.12958 1.35541 0.85861 0.79795 0.78898 0.79752 1.20408 1.20970 1.19426 1.23265 0.97178 0.91344 0.97435 1.21476 0.95744 0.95837 0.86199 0.88428 0.87902 0.88965 0.88596 0.88945 0.89385 0.91907 0.86754 0.91852 0.87354 0.89113 0.92983 0.77514 0.91903 0.93598 0.88485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.18 8.92 37.16 0.33 -0.85 16 2 C 0.28 2.43 1.79 -27.89 -0.05 2.38 16 3 F -0.18 -1.64 16.65 2.25 0.04 -1.60 16 4 F -0.19 -1.54 13.54 2.25 0.03 -1.51 16 5 C 0.48 5.29 6.80 -10.99 -0.07 5.21 16 6 O -0.49 -6.56 14.77 5.55 0.08 -6.48 16 7 N -0.58 -6.27 2.96 -167.79 -0.50 -6.76 16 8 C 0.07 0.56 4.94 -4.26 -0.02 0.54 16 9 C 0.05 0.39 7.01 37.30 0.26 0.66 16 10 O -0.37 -4.45 10.20 -35.23 -0.36 -4.81 16 11 C 0.08 1.01 3.64 -26.46 -0.10 0.92 16 12 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 13 C 0.06 0.93 5.55 -3.06 -0.02 0.92 16 14 N -0.49 -8.45 4.89 -233.70 -1.14 -9.60 16 15 C 0.04 0.75 5.14 -4.97 -0.03 0.72 16 16 C 0.45 10.60 7.58 -10.98 -0.08 10.52 16 17 O -0.58 -15.54 14.73 5.55 0.08 -15.46 16 18 N -0.56 -14.43 5.29 -10.96 -0.06 -14.49 16 19 C -0.30 -8.33 9.68 -14.94 -0.14 -8.47 16 20 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.73 13.05 55.50 0.72 -24.00 16 23 Si 0.93 21.18 29.55 -169.99 -5.02 16.15 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 27 C 0.04 0.53 5.52 -2.86 -0.02 0.51 16 28 C 0.11 1.40 2.81 -68.85 -0.19 1.21 16 29 H 0.10 1.26 7.90 -51.93 -0.41 0.85 16 30 H 0.10 0.68 7.87 -51.93 -0.41 0.27 16 31 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.09 0.65 5.98 -51.93 -0.31 0.34 16 34 H 0.09 0.76 7.55 -51.93 -0.39 0.37 16 35 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 36 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 1.09 7.29 -51.93 -0.38 0.71 16 38 H 0.11 1.93 7.53 -51.93 -0.39 1.54 16 39 H 0.09 1.53 8.09 -51.93 -0.42 1.11 16 40 H 0.05 0.89 7.82 -51.93 -0.41 0.48 16 41 H 0.39 9.60 7.90 -40.82 -0.32 9.27 16 42 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 43 H 0.05 0.65 7.85 -51.93 -0.41 0.24 16 44 H 0.10 1.45 7.58 -51.93 -0.39 1.05 16 LS Contribution 361.31 15.07 5.44 5.44 Total: -1.00 -32.58 361.31 -6.77 -39.35 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -5.86 Total: 9.01 kcal Atomic # 6 Polarization: 14.98 SS G_CDS: -0.23 Total: 14.76 kcal Atomic # 7 Polarization: -53.88 SS G_CDS: -0.97 Total: -54.85 kcal Atomic # 8 Polarization: -26.55 SS G_CDS: -0.20 Total: -26.74 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.07 Total: -3.11 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.58 -6.77 -39.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001217180096.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.857 kcal (2) G-P(sol) polarization free energy of solvation -32.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds