Wall clock time and date at job start Wed Apr 1 2020 05:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 F 1.39900 * 109.46867 * 2 1 4 4 F 1.39902 * 109.46987 * 240.00303 * 2 1 3 5 5 C 1.50693 * 109.47362 * 120.00210 * 2 1 3 6 6 O 1.21285 * 120.00003 * 334.99957 * 5 2 1 7 7 N 1.34779 * 120.00144 * 155.00208 * 5 2 1 8 8 C 1.45815 * 117.47170 * 359.86780 * 7 5 2 9 9 C 1.53283 * 109.09084 * 156.32726 * 8 7 5 10 10 O 1.43187 * 107.35130 * 52.15391 * 9 8 7 11 11 C 1.42281 * 114.05022 * 289.46221 * 10 9 8 12 12 H 1.09003 * 109.78459 * 289.33684 * 11 10 9 13 13 C 1.54005 * 108.97939 * 169.06651 * 11 10 9 14 14 N 1.47338 * 107.42528 * 235.27876 * 13 11 10 15 15 C 1.46903 * 111.00150 * 142.17478 * 14 13 11 16 16 C 1.50701 * 109.46635 * 69.87834 * 15 14 13 17 17 O 1.21293 * 120.00114 * 359.97438 * 16 15 14 18 18 N 1.34782 * 120.00056 * 179.97438 * 16 15 14 19 19 C 1.37091 * 120.00353 * 180.02562 * 18 16 15 20 20 H 1.08010 * 119.99700 * 359.97438 * 19 18 16 21 21 C 1.38944 * 120.00212 * 180.02562 * 19 18 16 22 22 N 1.31410 * 120.00112 * 359.97438 * 21 19 18 23 23 Si 1.86809 * 120.00046 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47272 * 89.99464 * 23 21 19 25 25 H 1.48497 * 109.46862 * 209.99747 * 23 21 19 26 26 H 1.48499 * 109.46761 * 329.99713 * 23 21 19 27 27 C 1.47680 * 107.62252 * 20.52937 * 14 13 11 28 28 C 1.44217 * 117.51664 * 180.02562 * 7 5 2 29 29 H 1.09006 * 107.95682 * 307.84402 * 28 7 5 30 30 H 1.08998 * 109.46729 * 299.99505 * 1 2 3 31 31 H 1.08992 * 109.47143 * 59.99775 * 1 2 3 32 32 H 1.09005 * 109.46815 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.50621 * 36.49460 * 8 7 5 34 34 H 1.08997 * 109.66257 * 276.25976 * 8 7 5 35 35 H 1.09002 * 109.89514 * 292.66939 * 9 8 7 36 36 H 1.09003 * 109.89317 * 171.63575 * 9 8 7 37 37 H 1.09006 * 109.85274 * 354.74282 * 13 11 10 38 38 H 1.09002 * 109.86118 * 115.81029 * 13 11 10 39 39 H 1.08993 * 109.47238 * 189.87140 * 15 14 13 40 40 H 1.08996 * 109.47557 * 309.88210 * 15 14 13 41 41 H 0.96999 * 119.99594 * 359.97438 * 18 16 15 42 42 H 0.97001 * 119.99965 * 180.02562 * 22 21 19 43 43 H 1.09003 * 110.24908 * 89.76236 * 27 14 13 44 44 H 1.09002 * 110.24745 * 211.67182 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6594 -1.1423 5 6 2.0324 -0.7104 1.2304 6 8 1.3370 -0.7706 2.2223 7 7 3.2544 -1.2789 1.2286 8 6 4.0423 -1.1760 0.0059 9 6 5.5281 -1.3222 0.3533 10 8 5.6708 -2.5212 1.1229 11 6 5.1247 -2.4371 2.4340 12 1 5.7393 -1.7790 3.0482 13 6 5.0904 -3.8466 3.0536 14 7 3.7022 -4.1120 3.4698 15 6 3.3372 -5.5133 3.2227 16 6 4.0875 -6.4039 4.1793 17 8 4.8514 -5.9190 4.9870 18 7 3.9096 -7.7393 4.1373 19 6 4.5917 -8.5494 5.0078 20 1 5.2720 -8.1176 5.7271 21 6 4.4087 -9.9261 4.9641 22 7 3.5815 -10.4515 4.0886 23 14 5.3388 -11.0300 6.1499 24 1 4.5385 -11.2126 7.3874 25 1 5.5756 -12.3509 5.5140 26 1 6.6415 -10.4039 6.4907 27 6 2.8256 -3.1955 2.7130 28 6 3.6811 -1.9452 2.4343 29 1 3.5543 -1.2507 3.2649 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 3.8707 -0.2043 -0.4570 34 1 3.7508 -1.9662 -0.6859 35 1 5.8583 -0.4641 0.9388 36 1 6.1172 -1.3959 -0.5609 37 1 5.4026 -4.5839 2.3139 38 1 5.7507 -3.8864 3.9200 39 1 2.2652 -5.6413 3.3721 40 1 3.5959 -5.7810 2.1983 41 1 3.2984 -8.1270 3.4915 42 1 3.4535 -11.4126 4.0584 43 1 2.5160 -3.6577 1.7757 44 1 1.9521 -2.9310 3.3090 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001217180096.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:03 Heat of formation + Delta-G solvation = -199.410580 kcal Electronic energy + Delta-G solvation = -32019.468570 eV Core-core repulsion = 27221.912074 eV Total energy + Delta-G solvation = -4797.556496 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.149 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.49347 -48.39792 -42.26863 -40.49600 -39.82630 -38.09184 -36.47940 -35.91420 -33.41610 -33.02723 -32.53358 -30.03187 -29.92857 -28.29629 -26.43378 -25.47227 -24.62746 -22.89547 -22.16358 -21.12607 -20.64987 -19.88979 -19.34381 -18.99118 -18.59059 -17.87813 -17.72764 -17.36638 -16.88589 -16.76194 -16.59746 -16.46305 -15.98827 -15.74552 -15.57753 -15.25826 -15.02472 -14.97555 -14.71999 -14.62707 -14.35129 -14.19906 -13.87155 -13.75906 -13.55795 -13.45980 -13.38728 -13.21573 -12.98077 -12.96552 -12.75823 -12.57348 -12.41487 -12.26705 -12.11902 -11.84405 -11.49471 -11.44179 -10.78575 -10.37689 -10.07249 -10.01346 -9.45024 -8.46462 -5.95195 0.79101 1.14225 1.38112 1.41791 1.54655 2.03450 2.20991 2.29958 2.49583 2.71093 2.77905 3.07974 3.19933 3.22920 3.29163 3.40158 3.42796 3.60649 3.77140 3.96824 4.06622 4.14349 4.17815 4.23801 4.33450 4.43796 4.47798 4.52248 4.53700 4.53921 4.65312 4.72468 4.76641 4.93237 4.95720 5.08769 5.41078 5.64857 5.70399 5.76974 6.01869 6.03442 6.44814 6.59711 7.12459 7.54958 8.10328 8.71162 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.022067 B = 0.002383 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.560344 B =11745.119640 C =12241.501020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.290 3.710 3 F -0.183 7.183 4 F -0.182 7.182 5 C 0.473 3.527 6 O -0.517 6.517 7 N -0.579 5.579 8 C 0.064 3.936 9 C 0.044 3.956 10 O -0.384 6.384 11 C 0.092 3.908 12 H 0.097 0.903 13 C 0.060 3.940 14 N -0.511 5.511 15 C 0.054 3.946 16 C 0.444 3.556 17 O -0.612 6.612 18 N -0.574 5.574 19 C -0.331 4.331 20 H 0.080 0.920 21 C -0.014 4.014 22 N -0.922 5.922 23 Si 0.993 3.007 24 H -0.271 1.271 25 H -0.271 1.271 26 H -0.272 1.272 27 C 0.044 3.956 28 C 0.119 3.881 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.115 0.885 32 H 0.098 0.902 33 H 0.111 0.889 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.142 0.858 37 H 0.049 0.951 38 H 0.083 0.917 39 H 0.109 0.891 40 H 0.069 0.931 41 H 0.395 0.605 42 H 0.278 0.722 43 H 0.050 0.950 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.744 22.830 -15.293 27.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.251 3.749 3 F -0.164 7.164 4 F -0.163 7.163 5 C 0.256 3.744 6 O -0.392 6.392 7 N -0.311 5.311 8 C -0.057 4.057 9 C -0.032 4.032 10 O -0.303 6.303 11 C 0.033 3.967 12 H 0.115 0.885 13 C -0.068 4.068 14 N -0.236 5.236 15 C -0.077 4.077 16 C 0.231 3.769 17 O -0.498 6.498 18 N -0.211 5.211 19 C -0.461 4.461 20 H 0.098 0.902 21 C -0.213 4.213 22 N -0.563 5.563 23 Si 0.817 3.183 24 H -0.197 1.197 25 H -0.195 1.195 26 H -0.197 1.197 27 C -0.085 4.085 28 C 0.014 3.986 29 H 0.112 0.888 30 H 0.118 0.882 31 H 0.133 0.867 32 H 0.116 0.884 33 H 0.129 0.871 34 H 0.108 0.892 35 H 0.094 0.906 36 H 0.160 0.840 37 H 0.067 0.933 38 H 0.102 0.898 39 H 0.127 0.873 40 H 0.087 0.913 41 H 0.229 0.771 42 H 0.087 0.913 43 H 0.068 0.932 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.537 22.832 -13.823 26.924 hybrid contribution 0.138 -0.966 -0.508 1.100 sum -3.399 21.866 -14.331 26.364 Atomic orbital electron populations 1.22706 0.86678 1.07136 1.07330 1.21255 0.97033 0.75567 0.81094 1.93092 1.90642 1.36118 1.96519 1.93075 1.90202 1.80557 1.52440 1.21419 0.82313 0.80668 0.89963 1.90796 1.55802 1.58667 1.33984 1.47157 1.16531 1.52982 1.14473 1.22832 0.93035 1.04921 0.84955 1.23348 0.94287 0.87575 0.97966 1.88009 1.79288 1.37528 1.25429 1.22651 0.91399 0.97238 0.85379 0.88495 1.22717 0.90947 0.94426 0.98752 1.63505 1.02609 1.02912 1.54563 1.21936 1.01035 0.87762 0.96993 1.20572 0.86017 0.82817 0.87508 1.90480 1.41793 1.74966 1.42541 1.41909 1.40646 1.05048 1.33536 1.19663 1.23128 0.88719 1.14552 0.90191 1.26047 0.97934 0.98042 0.99296 1.69676 1.36718 1.13621 1.36251 0.84925 0.78321 0.77236 0.77841 1.19666 1.19529 1.19688 1.23193 0.96717 0.91546 0.97044 1.21254 0.95162 0.94973 0.87182 0.88825 0.88174 0.86674 0.88353 0.87131 0.89232 0.90641 0.83989 0.93291 0.89828 0.87293 0.91276 0.77085 0.91306 0.93157 0.89109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.97 8.92 71.98 0.64 -1.33 16 2 C 0.29 4.36 1.79 29.85 0.05 4.42 16 3 F -0.18 -2.87 16.65 44.97 0.75 -2.12 16 4 F -0.18 -2.53 13.54 44.97 0.61 -1.92 16 5 C 0.47 9.76 6.80 87.65 0.60 10.35 16 6 O -0.52 -13.49 14.77 -3.05 -0.04 -13.53 16 7 N -0.58 -11.57 2.96 -803.16 -2.37 -13.94 16 8 C 0.06 0.92 4.94 86.60 0.43 1.35 16 9 C 0.04 0.61 7.01 72.08 0.51 1.11 16 10 O -0.38 -8.72 10.20 -148.98 -1.52 -10.23 16 11 C 0.09 2.28 3.64 30.77 0.11 2.39 16 12 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 13 C 0.06 1.96 5.55 86.56 0.48 2.44 16 14 N -0.51 -17.66 4.89 -893.29 -4.37 -22.03 16 15 C 0.05 1.99 5.14 85.56 0.44 2.43 16 16 C 0.44 21.67 7.58 87.66 0.66 22.33 16 17 O -0.61 -34.20 14.73 -3.07 -0.05 -34.24 16 18 N -0.57 -30.05 5.29 -306.98 -1.62 -31.67 16 19 C -0.33 -19.02 9.68 84.04 0.81 -18.21 16 20 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 21 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 22 N -0.92 -50.31 13.05 21.66 0.28 -50.02 16 23 Si 0.99 43.35 29.55 68.60 2.03 45.38 16 24 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 25 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 26 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 27 C 0.04 1.23 5.52 86.50 0.48 1.70 16 28 C 0.12 2.89 2.81 45.61 0.13 3.01 16 29 H 0.09 2.35 7.90 -2.38 -0.02 2.34 16 30 H 0.10 1.18 7.87 -2.39 -0.02 1.16 16 31 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 33 H 0.11 1.22 5.98 -2.39 -0.01 1.21 16 34 H 0.09 1.30 7.55 -2.39 -0.02 1.29 16 35 H 0.08 0.87 8.09 -2.39 -0.02 0.85 16 36 H 0.14 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.05 1.73 7.29 -2.38 -0.02 1.71 16 38 H 0.08 3.13 7.53 -2.39 -0.02 3.11 16 39 H 0.11 3.61 8.09 -2.39 -0.02 3.59 16 40 H 0.07 2.32 7.82 -2.39 -0.02 2.30 16 41 H 0.40 19.72 7.90 -92.71 -0.73 18.98 16 42 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 43 H 0.05 1.37 7.85 -2.39 -0.02 1.35 16 44 H 0.09 2.69 7.58 -2.39 -0.02 2.67 16 Total: -1.00 -71.13 361.31 -0.18 -71.31 By element: Atomic # 1 Polarization: 30.98 SS G_CDS: 0.32 Total: 31.30 kcal Atomic # 6 Polarization: 25.93 SS G_CDS: 5.81 Total: 31.73 kcal Atomic # 7 Polarization: -109.58 SS G_CDS: -8.09 Total: -117.67 kcal Atomic # 8 Polarization: -56.40 SS G_CDS: -1.61 Total: -58.01 kcal Atomic # 9 Polarization: -5.40 SS G_CDS: 1.36 Total: -4.05 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -71.13 -0.18 -71.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001217180096.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.098 kcal (2) G-P(sol) polarization free energy of solvation -71.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds