Wall clock time and date at job start Wed Apr 1 2020 04:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46900 * 109.47138 * 180.85628 * 3 2 1 5 5 C 1.46905 * 111.00011 * 71.48022 * 4 3 2 6 6 C 1.53001 * 109.46958 * 199.18658 * 5 4 3 7 7 C 1.53002 * 109.47046 * 175.33193 * 6 5 4 8 8 N 1.46508 * 109.47024 * 179.97438 * 7 6 5 9 9 C 1.34775 * 119.99871 * 180.02562 * 8 7 6 10 10 O 1.21280 * 120.00138 * 359.97438 * 9 8 7 11 11 C 1.50700 * 119.99892 * 180.02562 * 9 8 7 12 12 S 1.80996 * 109.47121 * 179.97438 * 11 9 8 13 13 C 1.76200 * 99.99864 * 180.02562 * 12 11 9 14 14 H 1.07994 * 120.00070 * 0.02562 * 13 12 11 15 15 C 1.38801 * 119.99657 * 179.97438 * 13 12 11 16 16 N 1.31630 * 120.00391 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99877 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46825 * 60.00182 * 17 15 13 19 19 H 1.48499 * 109.47242 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47396 * 300.00548 * 17 15 13 21 21 C 1.46900 * 111.00181 * 195.43282 * 4 3 2 22 22 C 1.50703 * 109.46845 * 66.04324 * 21 4 3 23 23 C 1.38668 * 120.41890 * 270.25133 * 22 21 4 24 24 C 1.38631 * 118.42041 * 180.24198 * 23 22 21 25 25 C 1.38230 * 119.15640 * 359.75827 * 24 23 22 26 26 N 1.31850 * 120.76593 * 359.97438 * 25 24 23 27 27 C 1.31877 * 121.72576 * 0.02562 * 26 25 24 28 28 H 4.40892 * 5.52110 * 179.97438 * 4 1 2 29 29 H 1.08997 * 109.47587 * 60.85375 * 3 2 1 30 30 H 1.09010 * 109.46823 * 300.85300 * 3 2 1 31 31 H 1.08999 * 109.46927 * 319.18241 * 5 4 3 32 32 H 1.08994 * 109.47544 * 79.18561 * 5 4 3 33 33 H 1.09004 * 109.46934 * 295.33412 * 6 5 4 34 34 H 1.09001 * 109.47455 * 55.32923 * 6 5 4 35 35 H 1.08992 * 109.46905 * 299.99490 * 7 6 5 36 36 H 1.08997 * 109.47317 * 60.00077 * 7 6 5 37 37 H 0.97002 * 119.99649 * 0.02562 * 8 7 6 38 38 H 1.08999 * 109.46680 * 300.00068 * 11 9 8 39 39 H 1.08997 * 109.46813 * 59.99857 * 11 9 8 40 40 H 0.96999 * 120.00461 * 179.97438 * 16 15 13 41 41 H 1.08998 * 109.46909 * 306.04824 * 21 4 3 42 42 H 1.08997 * 109.47120 * 186.04548 * 21 4 3 43 43 H 1.08001 * 120.78932 * 359.97438 * 23 22 21 44 44 H 1.07998 * 120.42011 * 179.72830 * 24 23 22 45 45 H 1.08008 * 119.61152 * 180.02562 * 25 24 23 46 46 H 1.08001 * 119.61790 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1351 1.3857 0.0207 5 6 2.8996 2.0077 1.3306 6 6 2.9636 3.5300 1.1912 7 6 2.6040 4.1801 2.5287 8 7 2.6659 5.6378 2.3954 9 6 2.3864 6.4237 3.4540 10 8 2.0832 5.9243 4.5168 11 6 2.4495 7.9231 3.3168 12 16 2.0242 8.6923 4.8990 13 6 2.1728 10.3928 4.4623 14 1 2.4550 10.6695 3.4573 15 6 1.9261 11.3767 5.4098 16 7 1.5817 11.0394 6.6346 17 14 2.0844 13.1795 4.9470 18 1 1.1360 13.4936 3.8483 19 1 1.7711 14.0231 6.1283 20 1 3.4724 13.4551 4.4966 21 6 4.5569 1.4475 -0.3434 22 6 4.7259 1.0290 -1.7812 23 6 4.9376 -0.3027 -2.1046 24 6 5.0926 -0.6408 -3.4401 25 6 5.0264 0.3531 -4.3985 26 7 4.8182 1.6088 -4.0546 27 6 4.6663 1.9667 -2.7944 28 1 -1.0502 -0.0004 -0.0002 29 1 3.0097 -0.4997 -0.8975 30 1 3.0096 -0.5263 0.8823 31 1 1.9156 1.7176 1.6988 32 1 3.6632 1.6747 2.0335 33 1 3.9722 3.8263 0.9027 34 1 2.2570 3.8550 0.4276 35 1 1.5955 3.8838 2.8171 36 1 3.3106 3.8552 3.2924 37 1 2.9080 6.0372 1.5453 38 1 3.4579 8.2193 3.0277 39 1 1.7425 8.2481 2.5535 40 1 1.4096 11.7270 7.2968 41 1 5.1261 0.7762 0.2997 42 1 4.9205 2.4672 -0.2166 43 1 4.9850 -1.0580 -1.3341 44 1 5.2635 -1.6676 -3.7280 45 1 5.1458 0.0979 -5.4412 46 1 4.4978 3.0054 -2.5511 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230674479.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:13 Heat of formation + Delta-G solvation = 56.269649 kcal Electronic energy + Delta-G solvation = -25783.621444 eV Core-core repulsion = 21994.134476 eV Total energy + Delta-G solvation = -3789.486968 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.77127 -39.22643 -38.47996 -35.30612 -33.79282 -33.11157 -32.41632 -32.24772 -31.25040 -29.17316 -27.86459 -26.28584 -25.44172 -24.01195 -23.60651 -22.27306 -21.32699 -20.22980 -18.61771 -17.81204 -17.55746 -16.84450 -16.58712 -16.40899 -16.20295 -15.58913 -15.57192 -15.14872 -14.84886 -14.78903 -14.47562 -14.09801 -13.88948 -13.72384 -13.62865 -13.28343 -13.07998 -13.03757 -12.75090 -12.59731 -12.13562 -11.85497 -11.80807 -11.69921 -11.06403 -11.03300 -11.02119 -10.81155 -10.75190 -10.54837 -10.21779 -9.88802 -9.81194 -9.48585 -9.39411 -9.05115 -8.92196 -8.85775 -8.22653 -6.48709 -6.20240 -3.90872 0.62263 0.79842 2.33438 2.53071 3.03929 3.12165 3.24622 3.26201 3.29139 3.33439 3.62781 3.80706 3.95687 4.07061 4.21907 4.24895 4.29809 4.45901 4.50257 4.59511 4.72731 4.80283 4.87227 4.89913 4.96264 5.07750 5.14742 5.19560 5.21727 5.26225 5.32329 5.39709 5.52676 5.60358 5.64147 5.67404 5.73645 5.85866 5.93456 5.99429 6.15865 6.23076 6.42427 6.46263 6.64506 7.30894 7.55314 7.60581 7.73120 8.36362 8.63500 9.24886 10.87114 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.016601 B = 0.001593 C = 0.001498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.243123 B =17570.865745 C =18686.854556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.185 4.185 3 C 0.158 3.842 4 N -0.530 5.530 5 C 0.057 3.943 6 C -0.125 4.125 7 C 0.123 3.877 8 N -0.739 5.739 9 C 0.531 3.469 10 O -0.519 6.519 11 C -0.153 4.153 12 S -0.061 6.061 13 C -0.536 4.536 14 H 0.072 0.928 15 C 0.074 3.926 16 N -0.868 5.868 17 Si 0.919 3.081 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.274 1.274 21 C 0.095 3.905 22 C -0.131 4.131 23 C -0.074 4.074 24 C -0.174 4.174 25 C 0.097 3.903 26 N -0.485 5.485 27 C 0.122 3.878 28 H 0.217 0.783 29 H 0.098 0.902 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.045 0.955 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.398 0.602 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.269 0.731 41 H 0.051 0.949 42 H 0.096 0.904 43 H 0.132 0.868 44 H 0.134 0.866 45 H 0.155 0.845 46 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.807 -27.265 -20.481 34.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.186 4.186 3 C 0.031 3.969 4 N -0.254 5.254 5 C -0.070 4.070 6 C -0.163 4.163 7 C -0.002 4.002 8 N -0.393 5.393 9 C 0.317 3.683 10 O -0.393 6.393 11 C -0.304 4.304 12 S 0.166 5.834 13 C -0.684 4.684 14 H 0.090 0.910 15 C -0.136 4.136 16 N -0.503 5.503 17 Si 0.745 3.255 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.199 1.199 21 C -0.033 4.033 22 C -0.133 4.133 23 C -0.101 4.101 24 C -0.193 4.193 25 C -0.060 4.060 26 N -0.193 5.193 27 C -0.035 4.035 28 H 0.234 0.766 29 H 0.116 0.884 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.064 0.936 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.232 0.768 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.114 0.886 43 H 0.150 0.850 44 H 0.152 0.848 45 H 0.172 0.828 46 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 5.972 -27.136 -19.497 33.943 hybrid contribution 0.815 0.722 -0.736 1.314 sum 6.787 -26.415 -20.232 33.958 Atomic orbital electron populations 1.24954 0.95948 0.98976 1.00847 1.22692 0.94037 1.01270 1.00588 1.19086 0.85622 0.89982 1.02185 1.61889 1.16539 1.16581 1.30386 1.22080 1.02121 0.94385 0.88450 1.21753 1.02795 0.94223 0.97559 1.21176 1.01968 0.80260 0.96818 1.45974 1.73060 1.06173 1.14126 1.20309 0.75804 0.88793 0.83367 1.90700 1.45733 1.75733 1.27150 1.23531 1.05144 0.93682 1.08058 1.85388 1.89883 1.01873 1.06272 1.22833 1.54493 0.91166 0.99951 0.90961 1.24989 0.94530 0.99569 0.94469 1.70007 1.43498 1.34095 1.02709 0.86226 0.78758 0.82483 0.78041 1.19936 1.20814 1.19947 1.21056 0.88274 1.02788 0.91133 1.20756 1.01391 0.94315 0.96866 1.21531 0.96028 0.95746 0.96783 1.22135 1.02209 1.01238 0.93757 1.22818 0.94798 0.88191 1.00153 1.67744 1.11429 1.19786 1.20311 1.22708 0.93468 1.00108 0.87211 0.76573 0.88446 0.92180 0.89972 0.93647 0.91258 0.90161 0.91646 0.91789 0.76787 0.89228 0.89203 0.92140 0.93101 0.88565 0.85024 0.84763 0.82811 0.82581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.54 19.25 29.55 0.57 -0.97 16 2 C -0.19 -1.61 12.54 -37.12 -0.47 -2.07 16 3 C 0.16 1.05 5.30 -6.61 -0.04 1.01 16 4 N -0.53 -3.59 4.36 -239.58 -1.05 -4.64 16 5 C 0.06 0.41 4.82 -3.82 -0.02 0.39 16 6 C -0.13 -0.95 5.36 -26.73 -0.14 -1.10 16 7 C 0.12 1.36 5.68 -4.04 -0.02 1.33 16 8 N -0.74 -9.68 5.56 -60.29 -0.33 -10.02 16 9 C 0.53 9.94 7.85 -10.99 -0.09 9.86 16 10 O -0.52 -11.89 15.86 5.56 0.09 -11.80 16 11 C -0.15 -3.10 6.16 36.01 0.22 -2.88 16 12 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 13 C -0.54 -15.34 9.50 30.94 0.29 -15.05 16 14 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 15 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 16 N -0.87 -26.26 13.22 55.49 0.73 -25.52 16 17 Si 0.92 21.47 29.55 -169.99 -5.02 16.44 16 18 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 21 C 0.09 0.51 4.97 -4.97 -0.02 0.49 16 22 C -0.13 -0.82 4.95 -104.48 -0.52 -1.34 16 23 C -0.07 -0.39 8.01 -39.28 -0.31 -0.70 16 24 C -0.17 -0.90 10.11 -39.44 -0.40 -1.29 16 25 C 0.10 0.65 11.18 -17.55 -0.20 0.45 16 26 N -0.48 -4.34 10.36 -13.25 -0.14 -4.48 16 27 C 0.12 0.95 10.86 -17.55 -0.19 0.76 16 28 H 0.22 1.13 7.80 -54.08 -0.42 0.71 16 29 H 0.10 0.58 5.16 -51.93 -0.27 0.31 16 30 H 0.06 0.33 8.06 -51.92 -0.42 -0.09 16 31 H 0.08 0.67 7.10 -51.93 -0.37 0.30 16 32 H 0.05 0.29 8.01 -51.93 -0.42 -0.13 16 33 H 0.07 0.45 6.91 -51.93 -0.36 0.10 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.40 4.03 8.47 -40.82 -0.35 3.68 16 38 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 39 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 40 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 41 H 0.05 0.22 8.08 -51.93 -0.42 -0.20 16 42 H 0.10 0.48 6.63 -51.93 -0.34 0.13 16 43 H 0.13 0.42 7.75 -52.49 -0.41 0.01 16 44 H 0.13 0.36 8.06 -52.49 -0.42 -0.06 16 45 H 0.15 0.66 8.06 -52.48 -0.42 0.24 16 46 H 0.16 1.03 8.06 -52.49 -0.42 0.60 16 LS Contribution 407.82 15.07 6.15 6.15 Total: -1.00 -36.88 407.82 -9.91 -46.79 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -6.70 Total: 0.06 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: -1.42 Total: -9.10 kcal Atomic # 7 Polarization: -43.88 SS G_CDS: -0.78 Total: -44.66 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.09 Total: -11.80 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -36.88 -9.91 -46.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230674479.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.056 kcal (2) G-P(sol) polarization free energy of solvation -36.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds