Wall clock time and date at job start Wed Apr 1 2020 04:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46900 * 109.47138 * 180.85628 * 3 2 1 5 5 C 1.46905 * 111.00011 * 71.48022 * 4 3 2 6 6 C 1.53001 * 109.46958 * 199.18658 * 5 4 3 7 7 C 1.53002 * 109.47046 * 175.33193 * 6 5 4 8 8 N 1.46508 * 109.47024 * 179.97438 * 7 6 5 9 9 C 1.34775 * 119.99871 * 180.02562 * 8 7 6 10 10 O 1.21280 * 120.00138 * 359.97438 * 9 8 7 11 11 C 1.50700 * 119.99892 * 180.02562 * 9 8 7 12 12 S 1.80996 * 109.47121 * 179.97438 * 11 9 8 13 13 C 1.76200 * 99.99864 * 180.02562 * 12 11 9 14 14 H 1.07994 * 120.00070 * 0.02562 * 13 12 11 15 15 C 1.38801 * 119.99657 * 179.97438 * 13 12 11 16 16 N 1.31630 * 120.00391 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99877 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46825 * 60.00182 * 17 15 13 19 19 H 1.48499 * 109.47242 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47396 * 300.00548 * 17 15 13 21 21 C 1.46900 * 111.00181 * 195.43282 * 4 3 2 22 22 C 1.50703 * 109.46845 * 66.04324 * 21 4 3 23 23 C 1.38668 * 120.41890 * 270.25133 * 22 21 4 24 24 C 1.38631 * 118.42041 * 180.24198 * 23 22 21 25 25 C 1.38230 * 119.15640 * 359.75827 * 24 23 22 26 26 N 1.31850 * 120.76593 * 359.97438 * 25 24 23 27 27 C 1.31877 * 121.72576 * 0.02562 * 26 25 24 28 28 H 4.40892 * 5.52110 * 179.97438 * 4 1 2 29 29 H 1.08997 * 109.47587 * 60.85375 * 3 2 1 30 30 H 1.09010 * 109.46823 * 300.85300 * 3 2 1 31 31 H 1.08999 * 109.46927 * 319.18241 * 5 4 3 32 32 H 1.08994 * 109.47544 * 79.18561 * 5 4 3 33 33 H 1.09004 * 109.46934 * 295.33412 * 6 5 4 34 34 H 1.09001 * 109.47455 * 55.32923 * 6 5 4 35 35 H 1.08992 * 109.46905 * 299.99490 * 7 6 5 36 36 H 1.08997 * 109.47317 * 60.00077 * 7 6 5 37 37 H 0.97002 * 119.99649 * 0.02562 * 8 7 6 38 38 H 1.08999 * 109.46680 * 300.00068 * 11 9 8 39 39 H 1.08997 * 109.46813 * 59.99857 * 11 9 8 40 40 H 0.96999 * 120.00461 * 179.97438 * 16 15 13 41 41 H 1.08998 * 109.46909 * 306.04824 * 21 4 3 42 42 H 1.08997 * 109.47120 * 186.04548 * 21 4 3 43 43 H 1.08001 * 120.78932 * 359.97438 * 23 22 21 44 44 H 1.07998 * 120.42011 * 179.72830 * 24 23 22 45 45 H 1.08008 * 119.61152 * 180.02562 * 25 24 23 46 46 H 1.08001 * 119.61790 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1351 1.3857 0.0207 5 6 2.8996 2.0077 1.3306 6 6 2.9636 3.5300 1.1912 7 6 2.6040 4.1801 2.5287 8 7 2.6659 5.6378 2.3954 9 6 2.3864 6.4237 3.4540 10 8 2.0832 5.9243 4.5168 11 6 2.4495 7.9231 3.3168 12 16 2.0242 8.6923 4.8990 13 6 2.1728 10.3928 4.4623 14 1 2.4550 10.6695 3.4573 15 6 1.9261 11.3767 5.4098 16 7 1.5817 11.0394 6.6346 17 14 2.0844 13.1795 4.9470 18 1 1.1360 13.4936 3.8483 19 1 1.7711 14.0231 6.1283 20 1 3.4724 13.4551 4.4966 21 6 4.5569 1.4475 -0.3434 22 6 4.7259 1.0290 -1.7812 23 6 4.9376 -0.3027 -2.1046 24 6 5.0926 -0.6408 -3.4401 25 6 5.0264 0.3531 -4.3985 26 7 4.8182 1.6088 -4.0546 27 6 4.6663 1.9667 -2.7944 28 1 -1.0502 -0.0004 -0.0002 29 1 3.0097 -0.4997 -0.8975 30 1 3.0096 -0.5263 0.8823 31 1 1.9156 1.7176 1.6988 32 1 3.6632 1.6747 2.0335 33 1 3.9722 3.8263 0.9027 34 1 2.2570 3.8550 0.4276 35 1 1.5955 3.8838 2.8171 36 1 3.3106 3.8552 3.2924 37 1 2.9080 6.0372 1.5453 38 1 3.4579 8.2193 3.0277 39 1 1.7425 8.2481 2.5535 40 1 1.4096 11.7270 7.2968 41 1 5.1261 0.7762 0.2997 42 1 4.9205 2.4672 -0.2166 43 1 4.9850 -1.0580 -1.3341 44 1 5.2635 -1.6676 -3.7280 45 1 5.1458 0.0979 -5.4412 46 1 4.4978 3.0054 -2.5511 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230674479.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:12 Heat of formation + Delta-G solvation = 30.635564 kcal Electronic energy + Delta-G solvation = -25784.733022 eV Core-core repulsion = 21994.134476 eV Total energy + Delta-G solvation = -3790.598546 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.21798 -40.59823 -39.07439 -36.39350 -34.57721 -34.31214 -33.84199 -32.80977 -32.05086 -30.50553 -28.36603 -27.70334 -26.94101 -24.46341 -24.27474 -22.86635 -22.04307 -21.48897 -19.80638 -19.14687 -17.97250 -17.76998 -17.45202 -17.20287 -17.11385 -16.86985 -16.61129 -16.44591 -15.81562 -15.72183 -15.51915 -15.23759 -14.68716 -14.60223 -14.40168 -14.21512 -14.10200 -13.78221 -13.70775 -13.45942 -13.16246 -13.14247 -12.87423 -12.84645 -12.58459 -12.48272 -12.25393 -11.74017 -11.73329 -11.40111 -11.12239 -11.12135 -10.95133 -10.67075 -10.36199 -10.27339 -10.10205 -9.93164 -9.37750 -8.66078 -8.33701 -6.11993 0.18258 0.37463 1.27742 1.44590 1.47505 1.57330 1.62525 1.75170 1.92720 2.27095 2.31548 2.80243 3.00265 3.19049 3.33627 3.49039 3.60478 3.82471 3.91570 3.95409 3.98018 4.08858 4.12077 4.19908 4.21530 4.30887 4.36444 4.43836 4.50450 4.52450 4.58194 4.66006 4.69444 4.79323 4.87788 4.92558 5.11032 5.15625 5.20512 5.23562 5.31835 5.42420 5.47338 5.81681 5.94146 5.99312 6.20445 6.52982 6.71908 7.07393 7.09050 7.26285 8.75245 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.016601 B = 0.001593 C = 0.001498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.243123 B =17570.865745 C =18686.854556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.208 4.208 3 C 0.157 3.843 4 N -0.538 5.538 5 C 0.062 3.938 6 C -0.110 4.110 7 C 0.123 3.877 8 N -0.712 5.712 9 C 0.532 3.468 10 O -0.568 6.568 11 C -0.130 4.130 12 S -0.153 6.153 13 C -0.548 4.548 14 H 0.083 0.917 15 C 0.014 3.986 16 N -0.911 5.911 17 Si 0.998 3.002 18 H -0.262 1.262 19 H -0.279 1.279 20 H -0.262 1.262 21 C 0.097 3.903 22 C -0.132 4.132 23 C -0.077 4.077 24 C -0.171 4.171 25 C 0.080 3.920 26 N -0.520 5.520 27 C 0.101 3.899 28 H 0.236 0.764 29 H 0.105 0.895 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.052 0.948 36 H 0.060 0.940 37 H 0.417 0.583 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.271 0.729 41 H 0.066 0.934 42 H 0.101 0.899 43 H 0.156 0.844 44 H 0.161 0.839 45 H 0.170 0.830 46 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.984 -27.837 -22.487 36.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.209 4.209 3 C 0.031 3.969 4 N -0.262 5.262 5 C -0.066 4.066 6 C -0.148 4.148 7 C -0.002 4.002 8 N -0.366 5.366 9 C 0.318 3.682 10 O -0.447 6.447 11 C -0.281 4.281 12 S 0.074 5.926 13 C -0.696 4.696 14 H 0.101 0.899 15 C -0.191 4.191 16 N -0.547 5.547 17 Si 0.820 3.180 18 H -0.187 1.187 19 H -0.204 1.204 20 H -0.186 1.186 21 C -0.030 4.030 22 C -0.134 4.134 23 C -0.104 4.104 24 C -0.190 4.190 25 C -0.077 4.077 26 N -0.229 5.229 27 C -0.055 4.055 28 H 0.252 0.748 29 H 0.123 0.877 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.106 0.894 34 H 0.096 0.904 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.254 0.746 38 H 0.129 0.871 39 H 0.127 0.873 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.119 0.881 43 H 0.173 0.827 44 H 0.178 0.822 45 H 0.187 0.813 46 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 7.169 -27.732 -21.569 35.857 hybrid contribution 0.456 0.740 -0.214 0.895 sum 7.624 -26.992 -21.784 35.514 Atomic orbital electron populations 1.25641 0.96939 0.98753 1.00735 1.23355 0.95135 1.01554 1.00817 1.19188 0.84596 0.90055 1.03103 1.61811 1.17565 1.16830 1.29991 1.21977 1.01821 0.93824 0.89021 1.21616 1.03673 0.94401 0.95081 1.21304 1.01268 0.78692 0.98892 1.45736 1.70647 1.06852 1.13370 1.20073 0.75827 0.88467 0.83835 1.90688 1.48442 1.76238 1.29312 1.23378 1.06632 0.94378 1.03731 1.85569 1.90689 1.03509 1.12800 1.23182 1.54485 0.91337 1.00551 0.89872 1.26127 0.93774 1.05004 0.94214 1.70177 1.44660 1.35831 1.04077 0.85008 0.79391 0.75633 0.77986 1.18700 1.20390 1.18629 1.21089 0.87545 1.03538 0.90795 1.20831 1.01139 0.94586 0.96879 1.21875 0.95111 0.95870 0.97515 1.22442 1.00916 1.02155 0.93499 1.23202 0.94953 0.87998 1.01510 1.67698 1.12774 1.21227 1.21173 1.22852 0.94479 1.00749 0.87469 0.74760 0.87745 0.90833 0.91304 0.92582 0.89409 0.90360 0.92965 0.92163 0.74593 0.87078 0.87270 0.91998 0.91560 0.88068 0.82677 0.82167 0.81285 0.82478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.15 19.25 74.32 1.43 -1.72 16 2 C -0.21 -3.40 12.54 31.13 0.39 -3.01 16 3 C 0.16 1.79 5.30 84.50 0.45 2.24 16 4 N -0.54 -6.21 4.36 -911.89 -3.98 -10.19 16 5 C 0.06 0.76 4.82 86.30 0.42 1.18 16 6 C -0.11 -1.43 5.36 30.60 0.16 -1.27 16 7 C 0.12 2.55 5.68 86.38 0.49 3.04 16 8 N -0.71 -17.37 5.56 -463.06 -2.57 -19.94 16 9 C 0.53 19.58 7.85 87.66 0.69 20.27 16 10 O -0.57 -26.51 15.86 -3.03 -0.05 -26.55 16 11 C -0.13 -5.14 6.16 71.24 0.44 -4.70 16 12 S -0.15 -8.53 20.57 -56.49 -1.16 -9.69 16 13 C -0.55 -31.39 9.50 67.95 0.65 -30.74 16 14 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 15 C 0.01 0.78 5.49 84.86 0.47 1.24 16 16 N -0.91 -56.17 13.22 21.65 0.29 -55.89 16 17 Si 1.00 43.65 29.55 68.60 2.03 45.68 16 18 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 19 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 20 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 21 C 0.10 0.81 4.97 85.56 0.43 1.24 16 22 C -0.13 -1.42 4.95 -19.77 -0.10 -1.52 16 23 C -0.08 -0.63 8.01 22.47 0.18 -0.45 16 24 C -0.17 -1.41 10.11 22.36 0.23 -1.18 16 25 C 0.08 0.99 11.18 84.69 0.95 1.94 16 26 N -0.52 -9.16 10.36 -195.84 -2.03 -11.19 16 27 C 0.10 1.51 10.86 84.67 0.92 2.42 16 28 H 0.24 2.26 7.80 -4.41 -0.03 2.23 16 29 H 0.10 1.02 5.16 -2.39 -0.01 1.01 16 30 H 0.07 0.63 8.06 -2.38 -0.02 0.61 16 31 H 0.07 1.06 7.10 -2.39 -0.02 1.04 16 32 H 0.06 0.58 8.01 -2.39 -0.02 0.56 16 33 H 0.09 0.87 6.91 -2.39 -0.02 0.85 16 34 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.42 7.21 8.47 -92.71 -0.79 6.42 16 38 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 39 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 40 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 41 H 0.07 0.37 8.08 -2.39 -0.02 0.35 16 42 H 0.10 0.74 6.63 -2.39 -0.02 0.72 16 43 H 0.16 0.46 7.75 -2.91 -0.02 0.44 16 44 H 0.16 0.39 8.06 -2.91 -0.02 0.37 16 45 H 0.17 1.30 8.06 -2.91 -0.02 1.27 16 46 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -82.73 407.82 0.90 -81.83 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: 0.20 Total: 16.97 kcal Atomic # 6 Polarization: -19.19 SS G_CDS: 8.18 Total: -11.01 kcal Atomic # 7 Polarization: -88.92 SS G_CDS: -8.30 Total: -97.21 kcal Atomic # 8 Polarization: -26.51 SS G_CDS: -0.05 Total: -26.55 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: -8.53 SS G_CDS: -1.16 Total: -9.69 kcal Total: -82.73 0.90 -81.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230674479.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.463 kcal (2) G-P(sol) polarization free energy of solvation -82.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds