Wall clock time and date at job start Wed Apr 1 2020 05:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50694 * 109.47267 * 2 1 4 4 O 1.21304 * 120.00184 * 0.02562 * 3 2 1 5 5 C 1.46791 * 120.00105 * 180.02562 * 3 2 1 6 6 C 1.39958 * 120.15071 * 5.88488 * 5 3 2 7 7 C 1.37951 * 120.21971 * 179.97438 * 6 5 3 8 8 C 1.38138 * 120.54231 * 0.02562 * 7 6 5 9 9 C 1.39666 * 120.29632 * 0.02562 * 8 7 6 10 10 C 1.47408 * 120.11713 * 180.27760 * 9 8 7 11 11 O 1.21504 * 119.99950 * 174.33127 * 10 9 8 12 12 O 1.34746 * 119.99739 * 354.33394 * 10 9 8 13 13 C 1.45201 * 116.99975 * 180.02562 * 12 10 9 14 14 C 1.40174 * 119.76821 * 359.97438 * 9 8 7 15 15 O 1.35332 * 120.26136 * 179.97438 * 14 9 8 16 16 C 1.42895 * 116.99853 * 277.44272 * 15 14 9 17 17 H 1.08997 * 110.89092 * 23.13042 * 16 15 14 18 18 C 1.55157 * 111.00549 * 147.01035 * 16 15 14 19 19 C 1.54325 * 102.94522 * 153.57409 * 18 16 15 20 20 N 1.47027 * 107.26812 * 337.80937 * 19 18 16 21 21 C 1.36938 * 125.64356 * 178.90092 * 20 19 18 22 22 H 1.07999 * 119.99730 * 180.02562 * 21 20 19 23 23 C 1.38811 * 120.00109 * 0.02562 * 21 20 19 24 24 N 1.31617 * 120.00219 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99609 * 180.02562 * 23 21 20 26 26 H 1.48490 * 109.47432 * 60.00193 * 25 23 21 27 27 H 1.48501 * 109.47038 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47308 * 299.99812 * 25 23 21 29 29 C 1.47461 * 108.72344 * 358.97402 * 20 19 18 30 30 H 1.09000 * 109.46844 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46922 * 299.99365 * 1 2 3 32 32 H 1.08990 * 109.47083 * 59.99491 * 1 2 3 33 33 H 1.09006 * 109.46907 * 240.00155 * 2 1 3 34 34 H 1.08994 * 109.47578 * 120.00426 * 2 1 3 35 35 H 1.08000 * 119.89070 * 359.95556 * 6 5 3 36 36 H 1.08000 * 119.72962 * 179.97438 * 7 6 5 37 37 H 1.07999 * 119.85167 * 180.02562 * 8 7 6 38 38 H 1.09000 * 109.47308 * 180.02562 * 13 12 10 39 39 H 1.09003 * 109.46721 * 299.99897 * 13 12 10 40 40 H 1.08993 * 109.47132 * 60.00033 * 13 12 10 41 41 H 1.08997 * 110.72375 * 271.93706 * 18 16 15 42 42 H 1.08996 * 110.71879 * 35.21083 * 18 16 15 43 43 H 1.09000 * 109.88078 * 97.22659 * 19 18 16 44 44 H 1.08999 * 109.88094 * 218.23542 * 19 18 16 45 45 H 0.96997 * 119.99746 * 179.97438 * 24 23 21 46 46 H 1.08998 * 110.35228 * 265.25283 * 29 20 19 47 47 H 1.08998 * 110.40766 * 142.91964 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 8 1.2441 2.3428 0.0005 5 6 3.4755 1.6890 -0.0006 6 6 4.3866 0.6339 -0.1252 7 6 5.7432 0.8843 -0.1264 8 6 6.2187 2.1756 -0.0046 9 6 5.3293 3.2449 0.1222 10 6 5.8409 4.6218 0.2459 11 8 5.0676 5.5590 0.2523 12 8 7.1662 4.8411 0.3517 13 6 7.5985 6.2222 0.4707 14 6 3.9483 3.0049 0.1250 15 8 3.0775 4.0336 0.2477 16 6 2.8113 4.5038 1.5706 17 1 3.6287 4.2496 2.2453 18 6 2.5421 6.0319 1.5740 19 6 1.6498 6.2229 2.8186 20 7 1.0241 4.9248 3.1105 21 6 0.1745 4.6648 4.1525 22 1 -0.2338 3.6733 4.2817 23 6 -0.1618 5.6754 5.0426 24 7 0.3355 6.8838 4.8849 25 14 -1.3202 5.3203 6.4644 26 1 -0.7355 4.2625 7.3270 27 1 -1.5182 6.5570 7.2623 28 1 -2.6284 4.8595 5.9339 29 6 1.4641 3.9486 2.0966 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 4.0264 -0.3798 -0.2204 36 1 6.4392 0.0641 -0.2226 37 1 7.2830 2.3590 -0.0073 38 1 8.6852 6.2575 0.5477 39 1 7.2786 6.7800 -0.4094 40 1 7.1561 6.6657 1.3626 41 1 3.4740 6.5874 1.6787 42 1 2.0124 6.3322 0.6700 43 1 2.2582 6.5400 3.6657 44 1 0.8824 6.9693 2.6135 45 1 0.1001 7.5900 5.5067 46 1 0.7366 3.8888 1.2871 47 1 1.6091 2.9684 2.5505 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231078912.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:56 Heat of formation + Delta-G solvation = -91.823322 kcal Electronic energy + Delta-G solvation = -32016.383915 eV Core-core repulsion = 27745.429531 eV Total energy + Delta-G solvation = -4270.954384 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.98477 -39.86825 -38.44595 -37.83104 -36.36697 -35.88195 -33.05584 -32.22277 -31.78323 -30.37810 -28.99550 -27.86914 -27.05137 -25.50083 -24.55044 -24.14792 -22.46743 -21.36225 -20.29984 -19.99243 -19.58181 -17.94494 -17.59439 -17.05127 -16.84878 -16.36342 -16.03775 -15.79721 -15.48989 -15.20179 -14.60120 -14.57279 -14.42850 -14.07614 -13.66435 -13.45619 -13.08886 -13.05159 -12.88483 -12.54799 -12.33248 -12.25423 -12.14650 -12.01420 -11.88974 -11.65643 -11.59768 -11.21459 -11.16590 -10.85867 -10.80115 -10.70538 -10.43183 -10.14198 -10.06535 -9.73233 -9.66755 -9.51418 -9.33699 -9.15331 -8.80968 -8.50778 -6.72664 -5.62578 -2.95444 0.30752 0.67323 2.14921 2.56202 2.72590 3.36090 3.45556 3.49269 3.51023 3.89628 3.95170 4.46906 4.55533 4.57699 4.76760 4.90042 4.95605 5.02923 5.05921 5.11681 5.13067 5.16441 5.36630 5.47006 5.50817 5.52752 5.64148 5.65998 5.76481 5.78302 5.87803 5.92114 5.92774 5.97479 6.06622 6.25048 6.25466 6.34642 6.51740 6.60647 6.73544 6.87399 7.02558 7.63439 7.72190 7.76146 7.78106 7.84628 7.94234 8.34416 9.29987 9.90311 10.57241 11.48981 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.009106 B = 0.004313 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3074.028530 B = 6489.965712 C = 8868.089303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.164 4.164 3 C 0.376 3.624 4 O -0.403 6.403 5 C -0.200 4.200 6 C -0.029 4.029 7 C -0.160 4.160 8 C -0.023 4.023 9 C -0.171 4.171 10 C 0.499 3.501 11 O -0.468 6.468 12 O -0.362 6.362 13 C 0.038 3.962 14 C 0.228 3.772 15 O -0.300 6.300 16 C 0.099 3.901 17 H 0.058 0.942 18 C -0.127 4.127 19 C 0.178 3.822 20 N -0.604 5.604 21 C -0.224 4.224 22 H 0.076 0.924 23 C -0.009 4.009 24 N -0.923 5.923 25 Si 0.912 3.088 26 H -0.286 1.286 27 H -0.290 1.290 28 H -0.285 1.285 29 C 0.127 3.873 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.143 0.857 38 H 0.100 0.900 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.046 0.954 44 H 0.046 0.954 45 H 0.252 0.748 46 H 0.053 0.947 47 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.590 -13.903 -12.738 24.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.202 4.202 3 C 0.250 3.750 4 O -0.274 6.274 5 C -0.202 4.202 6 C -0.048 4.048 7 C -0.178 4.178 8 C -0.042 4.042 9 C -0.172 4.172 10 C 0.342 3.658 11 O -0.353 6.353 12 O -0.279 6.279 13 C -0.056 4.056 14 C 0.181 3.819 15 O -0.215 6.215 16 C 0.044 3.956 17 H 0.076 0.924 18 C -0.165 4.165 19 C 0.053 3.947 20 N -0.332 5.332 21 C -0.352 4.352 22 H 0.094 0.906 23 C -0.205 4.205 24 N -0.570 5.570 25 Si 0.743 3.257 26 H -0.213 1.213 27 H -0.216 1.216 28 H -0.212 1.212 29 C 0.001 3.999 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.158 0.842 36 H 0.156 0.844 37 H 0.161 0.839 38 H 0.118 0.882 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.064 0.936 44 H 0.065 0.935 45 H 0.062 0.938 46 H 0.071 0.929 47 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 14.716 -12.818 -12.675 23.271 hybrid contribution -0.173 -0.097 0.920 0.941 sum 14.542 -12.915 -11.756 22.726 Atomic orbital electron populations 1.21592 0.93409 1.01564 1.03636 1.21939 0.98641 0.95591 1.03993 1.22204 0.87116 0.91555 0.74141 1.90678 1.57549 1.46899 1.32286 1.20978 0.96778 0.92471 1.09940 1.21603 0.92729 0.98550 0.91874 1.21052 0.95550 0.96863 1.04378 1.21572 1.00038 0.91430 0.91137 1.19595 0.93370 0.91468 1.12813 1.20877 0.80829 0.89646 0.74482 1.90973 1.56909 1.44030 1.43425 1.86494 1.25234 1.31832 1.84383 1.23258 1.00373 0.79166 1.02755 1.19047 0.86949 0.87330 0.88533 1.85890 1.60099 1.45994 1.29473 1.23679 0.97083 0.96315 0.78514 0.92423 1.22961 1.00494 0.92413 1.00672 1.21195 0.93700 0.88248 0.91513 1.44410 1.53835 1.05803 1.29160 1.19009 1.18829 0.95804 1.01575 0.90574 1.24800 1.00662 0.95707 0.99361 1.69959 1.47568 1.01120 1.38395 0.86192 0.80699 0.76781 0.82055 1.21262 1.21592 1.21157 1.22055 0.93149 0.92227 0.92502 0.92293 0.91599 0.92064 0.88848 0.88678 0.84154 0.84415 0.83898 0.88173 0.91822 0.91576 0.91317 0.91453 0.93581 0.93545 0.93750 0.92948 0.95471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.20 37.16 0.34 -1.22 16 2 C -0.16 -1.56 5.10 -27.89 -0.14 -1.70 16 3 C 0.38 5.27 7.09 -30.86 -0.22 5.05 16 4 O -0.40 -7.44 11.30 -16.30 -0.18 -7.63 16 5 C -0.20 -2.64 5.88 -104.99 -0.62 -3.26 16 6 C -0.03 -0.26 9.46 -39.04 -0.37 -0.62 16 7 C -0.16 -1.25 10.00 -39.72 -0.40 -1.64 16 8 C -0.02 -0.23 9.60 -39.09 -0.38 -0.60 16 9 C -0.17 -2.39 5.88 -104.90 -0.62 -3.01 16 10 C 0.50 7.57 7.82 34.46 0.27 7.84 16 11 O -0.47 -8.57 12.31 -26.57 -0.33 -8.89 16 12 O -0.36 -4.43 9.81 -40.62 -0.40 -4.83 16 13 C 0.04 0.37 10.57 101.05 1.07 1.43 16 14 C 0.23 3.71 5.61 -38.04 -0.21 3.49 16 15 O -0.30 -5.99 6.84 -48.59 -0.33 -6.32 16 16 C 0.10 2.15 2.63 -24.58 -0.06 2.08 16 17 H 0.06 1.25 7.90 -51.93 -0.41 0.84 16 18 C -0.13 -2.89 5.94 -24.90 -0.15 -3.04 16 19 C 0.18 4.79 5.37 -3.06 -0.02 4.77 16 20 N -0.60 -16.94 3.40 -170.04 -0.58 -17.52 16 21 C -0.22 -6.63 10.28 -15.06 -0.15 -6.79 16 22 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 23 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 24 N -0.92 -28.30 10.31 55.49 0.57 -27.73 16 25 Si 0.91 22.92 29.55 -169.99 -5.02 17.89 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 27 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 28 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 29 C 0.13 3.06 5.50 -2.51 -0.01 3.05 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.86 8.10 -51.93 -0.42 0.44 16 32 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 33 H 0.09 0.62 7.90 -51.93 -0.41 0.21 16 34 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.14 0.72 6.96 -52.49 -0.37 0.36 16 36 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 37 H 0.14 1.07 7.60 -52.49 -0.40 0.67 16 38 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 1.49 7.10 -51.93 -0.37 1.12 16 42 H 0.07 1.54 8.14 -51.93 -0.42 1.11 16 43 H 0.05 1.33 7.38 -51.93 -0.38 0.94 16 44 H 0.05 1.35 7.51 -51.93 -0.39 0.96 16 45 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 46 H 0.05 1.34 6.25 -51.93 -0.32 1.01 16 47 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 382.24 15.07 5.76 5.76 Total: -1.00 -36.59 382.24 -9.09 -45.68 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -6.82 Total: -1.88 kcal Atomic # 6 Polarization: 7.23 SS G_CDS: -1.76 Total: 5.46 kcal Atomic # 7 Polarization: -45.25 SS G_CDS: -0.01 Total: -45.25 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -1.24 Total: -27.67 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -5.02 Total: 17.89 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.59 -9.09 -45.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231078912.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.142 kcal (2) G-P(sol) polarization free energy of solvation -36.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds