Wall clock time and date at job start Wed Apr 1 2020 05:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50694 * 109.47267 * 2 1 4 4 O 1.21304 * 120.00184 * 0.02562 * 3 2 1 5 5 C 1.46791 * 120.00105 * 180.02562 * 3 2 1 6 6 C 1.39958 * 120.15071 * 5.88488 * 5 3 2 7 7 C 1.37951 * 120.21971 * 179.97438 * 6 5 3 8 8 C 1.38138 * 120.54231 * 0.02562 * 7 6 5 9 9 C 1.39666 * 120.29632 * 0.02562 * 8 7 6 10 10 C 1.47408 * 120.11713 * 180.27760 * 9 8 7 11 11 O 1.21504 * 119.99950 * 174.33127 * 10 9 8 12 12 O 1.34746 * 119.99739 * 354.33394 * 10 9 8 13 13 C 1.45201 * 116.99975 * 180.02562 * 12 10 9 14 14 C 1.40174 * 119.76821 * 359.97438 * 9 8 7 15 15 O 1.35332 * 120.26136 * 179.97438 * 14 9 8 16 16 C 1.42895 * 116.99853 * 277.44272 * 15 14 9 17 17 H 1.08997 * 110.89092 * 23.13042 * 16 15 14 18 18 C 1.55157 * 111.00549 * 147.01035 * 16 15 14 19 19 C 1.54325 * 102.94522 * 153.57409 * 18 16 15 20 20 N 1.47027 * 107.26812 * 337.80937 * 19 18 16 21 21 C 1.36938 * 125.64356 * 178.90092 * 20 19 18 22 22 H 1.07999 * 119.99730 * 180.02562 * 21 20 19 23 23 C 1.38811 * 120.00109 * 0.02562 * 21 20 19 24 24 N 1.31617 * 120.00219 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99609 * 180.02562 * 23 21 20 26 26 H 1.48490 * 109.47432 * 60.00193 * 25 23 21 27 27 H 1.48501 * 109.47038 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47308 * 299.99812 * 25 23 21 29 29 C 1.47461 * 108.72344 * 358.97402 * 20 19 18 30 30 H 1.09000 * 109.46844 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46922 * 299.99365 * 1 2 3 32 32 H 1.08990 * 109.47083 * 59.99491 * 1 2 3 33 33 H 1.09006 * 109.46907 * 240.00155 * 2 1 3 34 34 H 1.08994 * 109.47578 * 120.00426 * 2 1 3 35 35 H 1.08000 * 119.89070 * 359.95556 * 6 5 3 36 36 H 1.08000 * 119.72962 * 179.97438 * 7 6 5 37 37 H 1.07999 * 119.85167 * 180.02562 * 8 7 6 38 38 H 1.09000 * 109.47308 * 180.02562 * 13 12 10 39 39 H 1.09003 * 109.46721 * 299.99897 * 13 12 10 40 40 H 1.08993 * 109.47132 * 60.00033 * 13 12 10 41 41 H 1.08997 * 110.72375 * 271.93706 * 18 16 15 42 42 H 1.08996 * 110.71879 * 35.21083 * 18 16 15 43 43 H 1.09000 * 109.88078 * 97.22659 * 19 18 16 44 44 H 1.08999 * 109.88094 * 218.23542 * 19 18 16 45 45 H 0.96997 * 119.99746 * 179.97438 * 24 23 21 46 46 H 1.08998 * 110.35228 * 265.25283 * 29 20 19 47 47 H 1.08998 * 110.40766 * 142.91964 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 8 1.2441 2.3428 0.0005 5 6 3.4755 1.6890 -0.0006 6 6 4.3866 0.6339 -0.1252 7 6 5.7432 0.8843 -0.1264 8 6 6.2187 2.1756 -0.0046 9 6 5.3293 3.2449 0.1222 10 6 5.8409 4.6218 0.2459 11 8 5.0676 5.5590 0.2523 12 8 7.1662 4.8411 0.3517 13 6 7.5985 6.2222 0.4707 14 6 3.9483 3.0049 0.1250 15 8 3.0775 4.0336 0.2477 16 6 2.8113 4.5038 1.5706 17 1 3.6287 4.2496 2.2453 18 6 2.5421 6.0319 1.5740 19 6 1.6498 6.2229 2.8186 20 7 1.0241 4.9248 3.1105 21 6 0.1745 4.6648 4.1525 22 1 -0.2338 3.6733 4.2817 23 6 -0.1618 5.6754 5.0426 24 7 0.3355 6.8838 4.8849 25 14 -1.3202 5.3203 6.4644 26 1 -0.7355 4.2625 7.3270 27 1 -1.5182 6.5570 7.2623 28 1 -2.6284 4.8595 5.9339 29 6 1.4641 3.9486 2.0966 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 4.0264 -0.3798 -0.2204 36 1 6.4392 0.0641 -0.2226 37 1 7.2830 2.3590 -0.0073 38 1 8.6852 6.2575 0.5477 39 1 7.2786 6.7800 -0.4094 40 1 7.1561 6.6657 1.3626 41 1 3.4740 6.5874 1.6787 42 1 2.0124 6.3322 0.6700 43 1 2.2582 6.5400 3.6657 44 1 0.8824 6.9693 2.6135 45 1 0.1001 7.5900 5.5067 46 1 0.7366 3.8888 1.2871 47 1 1.6091 2.9684 2.5505 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231078912.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:55 Heat of formation + Delta-G solvation = -114.100848 kcal Electronic energy + Delta-G solvation = -32017.349941 eV Core-core repulsion = 27745.429531 eV Total energy + Delta-G solvation = -4271.920410 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.07278 -40.95322 -39.79622 -39.06932 -37.75002 -37.28842 -34.34696 -33.96196 -32.64803 -31.63441 -30.88130 -29.11913 -28.61036 -26.66474 -26.26283 -25.25958 -23.42180 -22.61166 -22.02962 -21.84442 -20.61968 -19.10264 -19.06778 -18.67673 -18.03842 -17.45581 -17.00405 -16.92462 -16.74023 -16.47349 -16.27176 -16.07844 -15.54158 -15.45058 -15.09559 -14.67586 -14.46943 -14.35141 -14.21580 -13.94003 -13.79124 -13.41390 -13.32184 -13.10742 -13.05549 -12.96722 -12.89611 -12.75460 -12.57347 -12.46179 -12.20467 -12.11107 -11.96691 -11.84910 -11.79143 -11.64946 -11.55727 -10.98147 -10.76748 -10.41879 -10.20460 -9.80991 -8.99110 -7.89402 -5.28108 -0.54115 -0.35736 1.23548 1.41816 1.47543 1.53854 1.60626 1.69101 2.25492 2.48523 2.84202 3.02505 3.28442 3.59002 3.59832 3.69740 3.84011 3.87490 3.98120 4.01560 4.13361 4.16558 4.20522 4.31037 4.31909 4.33203 4.36592 4.53436 4.63830 4.65975 4.72610 4.80636 4.89092 4.94428 5.00348 5.04804 5.10619 5.13693 5.19687 5.21693 5.33425 5.35881 5.39012 5.50761 5.59622 5.64985 6.09238 6.46971 6.68566 6.76923 7.01573 7.66880 8.33786 9.21381 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.009106 B = 0.004313 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3074.028530 B = 6489.965712 C = 8868.089303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.156 4.156 3 C 0.368 3.632 4 O -0.466 6.466 5 C -0.218 4.218 6 C -0.008 4.008 7 C -0.136 4.136 8 C -0.014 4.014 9 C -0.192 4.192 10 C 0.494 3.506 11 O -0.514 6.514 12 O -0.353 6.353 13 C 0.032 3.968 14 C 0.175 3.825 15 O -0.316 6.316 16 C 0.125 3.875 17 H 0.053 0.947 18 C -0.112 4.112 19 C 0.192 3.808 20 N -0.625 5.625 21 C -0.250 4.250 22 H 0.081 0.919 23 C -0.065 4.065 24 N -0.953 5.953 25 Si 0.988 3.012 26 H -0.272 1.272 27 H -0.290 1.290 28 H -0.277 1.277 29 C 0.137 3.863 30 H 0.088 0.912 31 H 0.030 0.970 32 H 0.044 0.956 33 H 0.137 0.863 34 H 0.123 0.877 35 H 0.190 0.810 36 H 0.191 0.809 37 H 0.171 0.829 38 H 0.141 0.859 39 H 0.060 0.940 40 H 0.052 0.948 41 H 0.078 0.922 42 H 0.061 0.939 43 H 0.020 0.980 44 H 0.013 0.987 45 H 0.250 0.750 46 H 0.037 0.963 47 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.263 -18.519 -13.220 29.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.193 4.193 3 C 0.247 3.753 4 O -0.341 6.341 5 C -0.219 4.219 6 C -0.026 4.026 7 C -0.153 4.153 8 C -0.032 4.032 9 C -0.193 4.193 10 C 0.340 3.660 11 O -0.403 6.403 12 O -0.270 6.270 13 C -0.061 4.061 14 C 0.129 3.871 15 O -0.231 6.231 16 C 0.069 3.931 17 H 0.071 0.929 18 C -0.150 4.150 19 C 0.067 3.933 20 N -0.353 5.353 21 C -0.378 4.378 22 H 0.099 0.901 23 C -0.257 4.257 24 N -0.601 5.601 25 Si 0.814 3.186 26 H -0.197 1.197 27 H -0.215 1.215 28 H -0.202 1.202 29 C 0.012 3.988 30 H 0.107 0.893 31 H 0.050 0.950 32 H 0.063 0.937 33 H 0.155 0.845 34 H 0.141 0.859 35 H 0.207 0.793 36 H 0.208 0.792 37 H 0.188 0.812 38 H 0.159 0.841 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.096 0.904 42 H 0.080 0.920 43 H 0.038 0.962 44 H 0.031 0.969 45 H 0.059 0.941 46 H 0.055 0.945 47 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 17.443 -17.495 -13.191 28.006 hybrid contribution -0.831 1.189 0.948 1.733 sum 16.612 -16.307 -12.242 26.301 Atomic orbital electron populations 1.21595 0.94945 1.02615 1.01178 1.22036 0.97264 0.92794 1.07157 1.23130 0.87377 0.93068 0.71758 1.90665 1.58958 1.49042 1.35466 1.21196 0.97340 0.92472 1.10912 1.22180 0.92465 0.99220 0.88742 1.21697 0.95938 0.97132 1.00517 1.22000 1.00716 0.91187 0.89262 1.19712 0.93142 0.92047 1.14418 1.21331 0.81351 0.90019 0.73331 1.90940 1.58071 1.45503 1.45795 1.86485 1.23568 1.33186 1.83713 1.23541 1.02614 0.77961 1.02027 1.19569 0.87477 0.87695 0.92361 1.85855 1.61623 1.48017 1.27604 1.23039 0.95268 0.94598 0.80166 0.92887 1.22702 0.99775 0.94274 0.98251 1.20880 0.92810 0.87424 0.92222 1.44716 1.54027 1.06912 1.29654 1.19422 1.19698 0.96330 1.02383 0.90091 1.25777 1.02393 0.95376 1.02189 1.70195 1.48724 1.01977 1.39237 0.85031 0.78438 0.76795 0.78311 1.19727 1.21537 1.20245 1.21971 0.94240 0.91562 0.91048 0.89270 0.95040 0.93723 0.84538 0.85892 0.79283 0.79154 0.81183 0.84089 0.92113 0.92906 0.90385 0.92048 0.96207 0.96918 0.94113 0.94542 0.95313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 9.20 71.98 0.66 -2.35 16 2 C -0.16 -2.46 5.10 29.85 0.15 -2.31 16 3 C 0.37 10.13 7.09 27.92 0.20 10.32 16 4 O -0.47 -18.25 11.30 17.78 0.20 -18.05 16 5 C -0.22 -5.36 5.88 -20.10 -0.12 -5.48 16 6 C -0.01 -0.10 9.46 22.62 0.21 0.11 16 7 C -0.14 -1.23 10.00 22.18 0.22 -1.01 16 8 C -0.01 -0.21 9.60 22.59 0.22 0.01 16 9 C -0.19 -5.19 5.88 -20.05 -0.12 -5.31 16 10 C 0.49 15.22 7.82 70.24 0.55 15.77 16 11 O -0.51 -19.91 12.31 26.81 0.33 -19.58 16 12 O -0.35 -8.28 9.81 -56.57 -0.56 -8.84 16 13 C 0.03 0.59 10.57 113.37 1.20 1.79 16 14 C 0.17 5.71 5.61 23.27 0.13 5.85 16 15 O -0.32 -13.41 6.84 -56.66 -0.39 -13.79 16 16 C 0.13 5.79 2.63 31.99 0.08 5.88 16 17 H 0.05 2.45 7.90 -2.39 -0.02 2.43 16 18 C -0.11 -5.50 5.94 31.78 0.19 -5.31 16 19 C 0.19 11.12 5.37 86.73 0.47 11.59 16 20 N -0.63 -37.24 3.40 -691.88 -2.35 -39.59 16 21 C -0.25 -15.44 10.28 84.03 0.86 -14.57 16 22 H 0.08 4.77 7.83 -2.91 -0.02 4.75 16 23 C -0.06 -3.93 5.49 84.86 0.47 -3.46 16 24 N -0.95 -61.17 10.31 21.65 0.22 -60.95 16 25 Si 0.99 48.17 29.55 68.60 2.03 50.20 16 26 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 27 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 28 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 29 C 0.14 7.07 5.50 86.85 0.48 7.54 16 30 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.03 0.84 8.10 -2.39 -0.02 0.82 16 32 H 0.04 1.04 8.10 -2.39 -0.02 1.02 16 33 H 0.14 1.03 7.90 -2.38 -0.02 1.01 16 34 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.19 0.41 6.96 -2.91 -0.02 0.39 16 36 H 0.19 -0.08 8.06 -2.91 -0.02 -0.11 16 37 H 0.17 1.69 7.60 -2.91 -0.02 1.67 16 38 H 0.14 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.08 3.65 7.10 -2.39 -0.02 3.64 16 42 H 0.06 3.05 8.14 -2.39 -0.02 3.03 16 43 H 0.02 1.23 7.38 -2.39 -0.02 1.21 16 44 H 0.01 0.80 7.51 -2.39 -0.02 0.78 16 45 H 0.25 15.41 8.31 -92.71 -0.77 14.64 16 46 H 0.04 2.03 6.25 -2.39 -0.01 2.01 16 47 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -90.41 382.24 6.32 -84.09 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: 0.98 Total: 7.46 kcal Atomic # 6 Polarization: 13.20 SS G_CDS: 5.85 Total: 19.05 kcal Atomic # 7 Polarization: -98.41 SS G_CDS: -2.13 Total: -100.54 kcal Atomic # 8 Polarization: -59.84 SS G_CDS: -0.41 Total: -60.26 kcal Atomic # 14 Polarization: 48.17 SS G_CDS: 2.03 Total: 50.20 kcal Total: -90.41 6.32 -84.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231078912.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.014 kcal (2) G-P(sol) polarization free energy of solvation -90.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds