Wall clock time and date at job start Wed Apr 1 2020 04:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50693 * 120.00296 * 2 1 4 4 C 1.53004 * 109.47345 * 240.00138 * 3 2 1 5 5 O 1.42906 * 109.47026 * 0.02562 * 3 2 1 6 6 C 1.53001 * 109.47094 * 119.99837 * 3 2 1 7 7 C 1.50702 * 109.47289 * 180.02562 * 6 3 2 8 8 O 1.21299 * 119.99614 * 0.02562 * 7 6 3 9 9 N 1.34772 * 120.00114 * 179.97438 * 7 6 3 10 10 C 1.46500 * 120.00174 * 4.73739 * 9 7 6 11 11 C 1.50692 * 109.47078 * 269.99951 * 10 9 7 12 12 H 1.08002 * 120.00616 * 359.97438 * 11 10 9 13 13 C 1.37878 * 120.00137 * 179.97438 * 11 10 9 14 14 N 1.31517 * 119.99881 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00502 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47072 * 60.00032 * 15 13 11 17 17 H 1.48495 * 109.47541 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47070 * 300.00348 * 15 13 11 19 19 C 1.40104 * 119.99878 * 184.73631 * 9 7 6 20 20 C 1.38850 * 120.01739 * 247.87655 * 19 9 7 21 21 C 1.38123 * 120.03496 * 179.75186 * 20 19 9 22 22 C 1.38715 * 120.16477 * 0.24792 * 21 20 19 23 23 C 1.38990 * 119.93006 * 359.94084 * 22 21 20 24 24 C 1.38645 * 119.88814 * 0.11781 * 23 22 21 25 25 O 1.36115 * 120.78048 * 180.20114 * 23 22 21 26 26 C 1.43176 * 116.71621 * 342.72286 * 25 23 22 27 27 C 1.53474 * 108.22695 * 46.27224 * 26 25 23 28 28 O 1.36198 * 119.31747 * 179.80814 * 22 21 20 29 29 H 1.08001 * 120.00084 * 0.02562 * 1 2 3 30 30 H 1.08001 * 119.99749 * 179.97438 * 1 2 3 31 31 H 1.08004 * 119.99645 * 180.02562 * 2 1 3 32 32 H 1.08994 * 109.46818 * 299.99840 * 4 3 2 33 33 H 1.09001 * 109.47110 * 59.99940 * 4 3 2 34 34 H 1.09004 * 109.46815 * 180.02562 * 4 3 2 35 35 H 0.96698 * 113.99738 * 59.99613 * 5 3 2 36 36 H 1.09002 * 109.47063 * 60.00401 * 6 3 2 37 37 H 1.08997 * 109.47324 * 300.00216 * 6 3 2 38 38 H 1.09002 * 109.46983 * 29.99973 * 10 9 7 39 39 H 1.08996 * 109.46915 * 149.99428 * 10 9 7 40 40 H 0.96995 * 120.00174 * 179.97438 * 14 13 11 41 41 H 1.08001 * 119.97802 * 0.03290 * 20 19 9 42 42 H 1.08002 * 119.91880 * 180.26619 * 21 20 19 43 43 H 1.07999 * 119.99693 * 179.88702 * 24 23 22 44 44 H 1.08995 * 109.71112 * 286.58780 * 26 25 23 45 45 H 1.08999 * 109.70971 * 165.95463 * 26 25 23 46 46 H 1.09000 * 109.70838 * 180.54599 * 27 26 25 47 47 H 1.09001 * 109.74435 * 59.94034 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.9432 1.3861 -1.2493 5 8 1.1349 2.3912 0.0006 6 6 2.9431 1.3860 1.2493 7 6 3.6962 2.6914 1.2496 8 8 3.5440 3.4796 0.3403 9 7 4.5381 2.9834 2.2608 10 6 4.8006 1.9903 3.3053 11 6 3.8029 2.1599 4.4218 12 1 3.0488 2.9306 4.3599 13 6 3.8526 1.3312 5.5226 14 7 4.7711 0.3930 5.5984 15 14 2.6163 1.5418 6.9070 16 1 1.2422 1.3518 6.3767 17 1 2.8824 0.5352 7.9658 18 1 2.7417 2.9064 7.4793 19 6 5.1621 4.2367 2.3129 20 6 6.5344 4.3376 2.1268 21 6 7.1493 5.5735 2.1730 22 6 6.3999 6.7165 2.4104 23 6 5.0266 6.6181 2.6009 24 6 4.4100 5.3772 2.5557 25 8 4.2740 7.7287 2.8309 26 6 4.9750 8.9077 3.2415 27 6 6.1939 9.0847 2.3258 28 8 7.0245 7.9259 2.4563 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8500 -0.9354 -0.0004 32 1 3.6514 0.5576 -1.2492 33 1 2.3165 1.3284 -2.1393 34 1 3.4885 2.3299 -1.2490 35 1 0.5439 2.4029 0.7659 36 1 3.6514 0.5575 1.2493 37 1 2.3165 1.3283 2.1392 38 1 4.7093 0.9886 2.8855 39 1 5.8090 2.1305 3.6946 40 1 4.8064 -0.1898 6.3730 41 1 7.1206 3.4497 1.9413 42 1 8.2162 5.6504 2.0238 43 1 3.3433 5.2985 2.7053 44 1 5.3042 8.7986 4.2748 45 1 4.3199 9.7743 3.1532 46 1 6.7518 9.9723 2.6240 47 1 5.8657 9.1871 1.2915 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001464803856.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:23 Heat of formation + Delta-G solvation = -99.552945 kcal Electronic energy + Delta-G solvation = -31537.085695 eV Core-core repulsion = 27265.796130 eV Total energy + Delta-G solvation = -4271.289565 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.04400 -39.87052 -38.18168 -37.05584 -36.76831 -34.80049 -32.73100 -32.63492 -31.11900 -30.76744 -30.03514 -28.37576 -27.52199 -26.72402 -24.52568 -23.22710 -22.70694 -22.30808 -20.81245 -19.41998 -19.05966 -18.22883 -17.19753 -17.13405 -16.71638 -16.41929 -16.10187 -15.57984 -15.20855 -15.05338 -14.85929 -14.61851 -14.39535 -14.24727 -14.12369 -13.72627 -13.54604 -13.24655 -12.82893 -12.64966 -12.42128 -12.24943 -12.00324 -11.84773 -11.77813 -11.62651 -11.25295 -11.20479 -11.09174 -11.01195 -10.89513 -10.77712 -10.68645 -10.34790 -10.24176 -9.87408 -9.83500 -9.26021 -8.96043 -8.60545 -8.40077 -8.08644 -7.45348 -6.23635 -4.31076 1.59877 1.66439 2.35477 3.13868 3.20996 3.23550 3.26368 3.30368 3.39191 3.81742 4.05877 4.27905 4.29855 4.56620 4.79325 4.85065 4.87490 4.92644 5.09763 5.17520 5.20059 5.31526 5.41908 5.47011 5.54388 5.55162 5.59896 5.73430 5.91872 5.96310 6.10993 6.13172 6.15499 6.25386 6.37469 6.43258 6.58237 6.62522 6.72112 6.84818 6.88577 6.90912 7.05915 7.12381 7.52941 7.66088 7.73846 7.97632 7.99525 8.19008 8.72601 8.98050 9.36713 10.83081 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.008035 B = 0.004298 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3483.749634 B = 6513.582235 C = 8572.409375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.177 4.177 3 C 0.175 3.825 4 C -0.145 4.145 5 O -0.541 6.541 6 C -0.156 4.156 7 C 0.524 3.476 8 O -0.535 6.535 9 N -0.563 5.563 10 C 0.240 3.760 11 C -0.539 4.539 12 H 0.061 0.939 13 C 0.068 3.932 14 N -0.890 5.890 15 Si 0.896 3.104 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.276 1.276 19 C 0.185 3.815 20 C -0.118 4.118 21 C -0.104 4.104 22 C 0.032 3.968 23 C 0.058 3.942 24 C -0.098 4.098 25 O -0.307 6.307 26 C 0.021 3.979 27 C 0.022 3.978 28 O -0.310 6.310 29 H 0.103 0.897 30 H 0.096 0.904 31 H 0.115 0.885 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.094 0.906 35 H 0.368 0.632 36 H 0.100 0.900 37 H 0.108 0.892 38 H 0.043 0.957 39 H 0.039 0.961 40 H 0.266 0.734 41 H 0.133 0.867 42 H 0.134 0.866 43 H 0.132 0.868 44 H 0.075 0.925 45 H 0.117 0.883 46 H 0.117 0.883 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.158 7.557 -7.087 10.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.195 4.195 3 C 0.134 3.866 4 C -0.201 4.201 5 O -0.346 6.346 6 C -0.196 4.196 7 C 0.314 3.686 8 O -0.413 6.413 9 N -0.291 5.291 10 C 0.121 3.879 11 C -0.577 4.577 12 H 0.079 0.921 13 C -0.136 4.136 14 N -0.528 5.528 15 Si 0.723 3.277 16 H -0.200 1.200 17 H -0.211 1.211 18 H -0.201 1.201 19 C 0.093 3.907 20 C -0.138 4.138 21 C -0.123 4.123 22 C -0.012 4.012 23 C 0.013 3.987 24 C -0.119 4.119 25 O -0.222 6.222 26 C -0.055 4.055 27 C -0.054 4.054 28 O -0.225 6.225 29 H 0.121 0.879 30 H 0.115 0.885 31 H 0.133 0.867 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.113 0.887 35 H 0.215 0.785 36 H 0.118 0.882 37 H 0.126 0.874 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.076 0.924 41 H 0.151 0.849 42 H 0.151 0.849 43 H 0.150 0.850 44 H 0.093 0.907 45 H 0.135 0.865 46 H 0.135 0.865 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.444 7.964 -7.996 11.294 hybrid contribution -0.951 -0.107 1.805 2.043 sum -0.507 7.857 -6.191 10.016 Atomic orbital electron populations 1.23784 0.96064 1.02041 1.00739 1.23647 0.96722 0.99035 1.00142 1.19907 0.88049 0.83700 0.94975 1.21917 0.98793 1.04300 0.95139 1.86659 1.50219 1.49164 1.48543 1.22313 1.00359 0.96744 1.00149 1.20407 0.78612 0.88578 0.81050 1.90623 1.64380 1.50836 1.35455 1.46004 1.43825 1.13234 1.26085 1.19562 0.97858 0.86040 0.84404 1.21399 1.15560 1.17400 1.03352 0.92090 1.24905 0.95757 0.94819 0.98078 1.69900 1.33403 1.19170 1.30341 0.86587 0.81503 0.78088 0.81529 1.20025 1.21087 1.20100 1.17139 0.90751 0.85326 0.97448 1.20988 0.93992 0.97099 1.01752 1.20146 0.99844 0.89436 1.02888 1.18767 0.90495 0.86062 1.05879 1.18590 0.89159 0.87320 1.03602 1.20454 1.01032 0.88530 1.01856 1.86316 1.34248 1.17789 1.83859 1.23573 0.95293 0.88014 0.98609 1.23549 0.93092 0.88233 1.00531 1.86281 1.34801 1.11944 1.89521 0.87875 0.88548 0.86739 0.92089 0.92755 0.88730 0.78501 0.88204 0.87380 0.93910 0.94259 0.92386 0.84942 0.84862 0.85012 0.90651 0.86488 0.86534 0.90776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.29 13.93 29.01 0.40 -1.89 16 2 C -0.18 -2.35 8.77 -36.03 -0.32 -2.67 16 3 C 0.18 2.72 0.94 -91.77 -0.09 2.63 16 4 C -0.14 -2.23 8.51 37.16 0.32 -1.91 16 5 O -0.54 -8.97 10.84 -53.51 -0.58 -9.55 16 6 C -0.16 -2.69 3.59 -27.88 -0.10 -2.79 16 7 C 0.52 10.54 7.09 -10.99 -0.08 10.46 16 8 O -0.54 -11.71 12.72 -12.74 -0.16 -11.87 16 9 N -0.56 -11.77 2.51 -114.73 -0.29 -12.06 16 10 C 0.24 5.50 4.88 -5.20 -0.03 5.47 16 11 C -0.54 -13.58 9.16 -34.44 -0.32 -13.90 16 12 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 13 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 14 N -0.89 -23.83 13.29 55.43 0.74 -23.09 16 15 Si 0.90 20.23 29.54 -169.99 -5.02 15.21 16 16 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 17 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 19 C 0.19 3.77 4.75 -83.66 -0.40 3.37 16 20 C -0.12 -2.12 9.68 -39.40 -0.38 -2.50 16 21 C -0.10 -1.70 9.95 -39.45 -0.39 -2.09 16 22 C 0.03 0.55 6.49 -39.13 -0.25 0.30 16 23 C 0.06 1.07 6.49 -39.15 -0.25 0.81 16 24 C -0.10 -1.99 9.47 -39.24 -0.37 -2.36 16 25 O -0.31 -5.05 10.42 -32.89 -0.34 -5.39 16 26 C 0.02 0.24 7.26 37.40 0.27 0.51 16 27 C 0.02 0.23 7.26 37.40 0.27 0.50 16 28 O -0.31 -4.56 10.42 -33.16 -0.35 -4.91 16 29 H 0.10 1.22 6.41 -52.49 -0.34 0.89 16 30 H 0.10 1.00 8.06 -52.49 -0.42 0.58 16 31 H 0.11 1.38 8.06 -52.48 -0.42 0.95 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.09 1.71 5.51 -51.93 -0.29 1.42 16 35 H 0.37 5.09 8.05 45.56 0.37 5.46 16 36 H 0.10 1.63 7.26 -51.93 -0.38 1.26 16 37 H 0.11 1.96 7.91 -51.93 -0.41 1.55 16 38 H 0.04 0.98 6.47 -51.93 -0.34 0.65 16 39 H 0.04 0.96 7.86 -51.93 -0.41 0.55 16 40 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 41 H 0.13 2.16 8.06 -52.49 -0.42 1.74 16 42 H 0.13 1.81 8.06 -52.49 -0.42 1.38 16 43 H 0.13 2.76 8.06 -52.49 -0.42 2.34 16 44 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.12 0.91 8.14 -51.93 -0.42 0.48 16 46 H 0.12 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 389.49 15.07 5.87 5.87 Total: -1.00 -31.08 389.49 -7.92 -39.00 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -5.98 Total: 11.20 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: -1.81 Total: -4.41 kcal Atomic # 7 Polarization: -35.59 SS G_CDS: 0.45 Total: -35.15 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: -1.43 Total: -31.73 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.08 -7.92 -39.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464803856.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.552 kcal (2) G-P(sol) polarization free energy of solvation -31.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds