Wall clock time and date at job start Wed Apr 1 2020 04:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50693 * 120.00296 * 2 1 4 4 C 1.53004 * 109.47345 * 240.00138 * 3 2 1 5 5 O 1.42906 * 109.47026 * 0.02562 * 3 2 1 6 6 C 1.53001 * 109.47094 * 119.99837 * 3 2 1 7 7 C 1.50702 * 109.47289 * 180.02562 * 6 3 2 8 8 O 1.21299 * 119.99614 * 0.02562 * 7 6 3 9 9 N 1.34772 * 120.00114 * 179.97438 * 7 6 3 10 10 C 1.46500 * 120.00174 * 4.73739 * 9 7 6 11 11 C 1.50692 * 109.47078 * 269.99951 * 10 9 7 12 12 H 1.08002 * 120.00616 * 359.97438 * 11 10 9 13 13 C 1.37878 * 120.00137 * 179.97438 * 11 10 9 14 14 N 1.31517 * 119.99881 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00502 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47072 * 60.00032 * 15 13 11 17 17 H 1.48495 * 109.47541 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47070 * 300.00348 * 15 13 11 19 19 C 1.40104 * 119.99878 * 184.73631 * 9 7 6 20 20 C 1.38850 * 120.01739 * 247.87655 * 19 9 7 21 21 C 1.38123 * 120.03496 * 179.75186 * 20 19 9 22 22 C 1.38715 * 120.16477 * 0.24792 * 21 20 19 23 23 C 1.38990 * 119.93006 * 359.94084 * 22 21 20 24 24 C 1.38645 * 119.88814 * 0.11781 * 23 22 21 25 25 O 1.36115 * 120.78048 * 180.20114 * 23 22 21 26 26 C 1.43176 * 116.71621 * 342.72286 * 25 23 22 27 27 C 1.53474 * 108.22695 * 46.27224 * 26 25 23 28 28 O 1.36198 * 119.31747 * 179.80814 * 22 21 20 29 29 H 1.08001 * 120.00084 * 0.02562 * 1 2 3 30 30 H 1.08001 * 119.99749 * 179.97438 * 1 2 3 31 31 H 1.08004 * 119.99645 * 180.02562 * 2 1 3 32 32 H 1.08994 * 109.46818 * 299.99840 * 4 3 2 33 33 H 1.09001 * 109.47110 * 59.99940 * 4 3 2 34 34 H 1.09004 * 109.46815 * 180.02562 * 4 3 2 35 35 H 0.96698 * 113.99738 * 59.99613 * 5 3 2 36 36 H 1.09002 * 109.47063 * 60.00401 * 6 3 2 37 37 H 1.08997 * 109.47324 * 300.00216 * 6 3 2 38 38 H 1.09002 * 109.46983 * 29.99973 * 10 9 7 39 39 H 1.08996 * 109.46915 * 149.99428 * 10 9 7 40 40 H 0.96995 * 120.00174 * 179.97438 * 14 13 11 41 41 H 1.08001 * 119.97802 * 0.03290 * 20 19 9 42 42 H 1.08002 * 119.91880 * 180.26619 * 21 20 19 43 43 H 1.07999 * 119.99693 * 179.88702 * 24 23 22 44 44 H 1.08995 * 109.71112 * 286.58780 * 26 25 23 45 45 H 1.08999 * 109.70971 * 165.95463 * 26 25 23 46 46 H 1.09000 * 109.70838 * 180.54599 * 27 26 25 47 47 H 1.09001 * 109.74435 * 59.94034 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.9432 1.3861 -1.2493 5 8 1.1349 2.3912 0.0006 6 6 2.9431 1.3860 1.2493 7 6 3.6962 2.6914 1.2496 8 8 3.5440 3.4796 0.3403 9 7 4.5381 2.9834 2.2608 10 6 4.8006 1.9903 3.3053 11 6 3.8029 2.1599 4.4218 12 1 3.0488 2.9306 4.3599 13 6 3.8526 1.3312 5.5226 14 7 4.7711 0.3930 5.5984 15 14 2.6163 1.5418 6.9070 16 1 1.2422 1.3518 6.3767 17 1 2.8824 0.5352 7.9658 18 1 2.7417 2.9064 7.4793 19 6 5.1621 4.2367 2.3129 20 6 6.5344 4.3376 2.1268 21 6 7.1493 5.5735 2.1730 22 6 6.3999 6.7165 2.4104 23 6 5.0266 6.6181 2.6009 24 6 4.4100 5.3772 2.5557 25 8 4.2740 7.7287 2.8309 26 6 4.9750 8.9077 3.2415 27 6 6.1939 9.0847 2.3258 28 8 7.0245 7.9259 2.4563 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8500 -0.9354 -0.0004 32 1 3.6514 0.5576 -1.2492 33 1 2.3165 1.3284 -2.1393 34 1 3.4885 2.3299 -1.2490 35 1 0.5439 2.4029 0.7659 36 1 3.6514 0.5575 1.2493 37 1 2.3165 1.3283 2.1392 38 1 4.7093 0.9886 2.8855 39 1 5.8090 2.1305 3.6946 40 1 4.8064 -0.1898 6.3730 41 1 7.1206 3.4497 1.9413 42 1 8.2162 5.6504 2.0238 43 1 3.3433 5.2985 2.7053 44 1 5.3042 8.7986 4.2748 45 1 4.3199 9.7743 3.1532 46 1 6.7518 9.9723 2.6240 47 1 5.8657 9.1871 1.2915 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001464803856.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:22 Heat of formation + Delta-G solvation = -118.166997 kcal Electronic energy + Delta-G solvation = -31537.892861 eV Core-core repulsion = 27265.796130 eV Total energy + Delta-G solvation = -4272.096731 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.28861 -41.34348 -39.48010 -38.25215 -38.13743 -36.46592 -34.52653 -33.91812 -32.34147 -31.95061 -31.35422 -29.67089 -29.21061 -28.18592 -25.72666 -24.91286 -24.18051 -23.55593 -22.02394 -20.57171 -20.43542 -19.48924 -18.82530 -18.43266 -18.07292 -17.98539 -17.51770 -17.03751 -16.47885 -16.39732 -16.20663 -16.03776 -15.83247 -15.44767 -15.38137 -14.99033 -14.89423 -14.61598 -14.40132 -14.01163 -13.83785 -13.58036 -13.46310 -13.17734 -13.13080 -13.02090 -12.91576 -12.71610 -12.50656 -12.41267 -12.26121 -12.03968 -11.99024 -11.88026 -11.76901 -11.49286 -11.12362 -10.65162 -10.48391 -10.28953 -9.92153 -9.55973 -8.90466 -8.20859 -6.34913 0.19050 0.26062 1.34645 1.40435 1.42269 1.49072 1.72297 1.98245 2.13190 2.36072 2.45796 2.65559 3.09376 3.28786 3.36501 3.65300 3.70084 3.88020 3.95973 4.04631 4.10838 4.15690 4.19332 4.21499 4.38667 4.42479 4.46862 4.58543 4.63524 4.67703 4.81841 4.83880 4.89433 4.95910 5.04289 5.06438 5.16453 5.17041 5.36282 5.40581 5.45626 5.67877 5.68104 5.85310 5.85969 6.00222 6.03750 6.38889 6.51307 6.76627 6.83339 7.30881 7.41830 8.84098 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.008035 B = 0.004298 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3483.749634 B = 6513.582235 C = 8572.409375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.191 4.191 3 C 0.177 3.823 4 C -0.142 4.142 5 O -0.559 6.559 6 C -0.148 4.148 7 C 0.519 3.481 8 O -0.555 6.555 9 N -0.564 5.564 10 C 0.256 3.744 11 C -0.545 4.545 12 H 0.048 0.952 13 C 0.029 3.971 14 N -0.915 5.915 15 Si 0.949 3.051 16 H -0.267 1.267 17 H -0.279 1.279 18 H -0.280 1.280 19 C 0.154 3.846 20 C -0.126 4.126 21 C -0.097 4.097 22 C 0.036 3.964 23 C 0.054 3.946 24 C -0.124 4.124 25 O -0.328 6.328 26 C 0.011 3.989 27 C 0.016 3.984 28 O -0.315 6.315 29 H 0.102 0.898 30 H 0.119 0.881 31 H 0.130 0.870 32 H 0.080 0.920 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.377 0.623 36 H 0.109 0.891 37 H 0.097 0.903 38 H 0.043 0.957 39 H 0.022 0.978 40 H 0.269 0.731 41 H 0.144 0.856 42 H 0.166 0.834 43 H 0.109 0.891 44 H 0.078 0.922 45 H 0.155 0.845 46 H 0.162 0.838 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.285 8.352 -7.047 10.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.210 4.210 3 C 0.136 3.864 4 C -0.199 4.199 5 O -0.365 6.365 6 C -0.188 4.188 7 C 0.310 3.690 8 O -0.434 6.434 9 N -0.292 5.292 10 C 0.137 3.863 11 C -0.584 4.584 12 H 0.066 0.934 13 C -0.172 4.172 14 N -0.554 5.554 15 Si 0.775 3.225 16 H -0.192 1.192 17 H -0.204 1.204 18 H -0.206 1.206 19 C 0.062 3.938 20 C -0.145 4.145 21 C -0.116 4.116 22 C -0.009 4.009 23 C 0.009 3.991 24 C -0.145 4.145 25 O -0.243 6.243 26 C -0.064 4.064 27 C -0.058 4.058 28 O -0.230 6.230 29 H 0.120 0.880 30 H 0.137 0.863 31 H 0.148 0.852 32 H 0.098 0.902 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.225 0.775 36 H 0.127 0.873 37 H 0.116 0.884 38 H 0.060 0.940 39 H 0.040 0.960 40 H 0.078 0.922 41 H 0.162 0.838 42 H 0.183 0.817 43 H 0.127 0.873 44 H 0.097 0.903 45 H 0.173 0.827 46 H 0.179 0.821 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.565 8.784 -7.957 11.865 hybrid contribution -0.980 -0.142 1.782 2.038 sum -0.415 8.642 -6.175 10.630 Atomic orbital electron populations 1.24007 0.95727 1.03095 0.98528 1.23569 0.97139 0.98154 1.02103 1.19924 0.87878 0.84773 0.93860 1.21878 0.99051 1.03432 0.95532 1.86630 1.50604 1.50088 1.49190 1.22321 1.00309 0.95333 1.00868 1.20906 0.78319 0.89325 0.80437 1.90609 1.64974 1.51787 1.36060 1.45946 1.44264 1.13294 1.25719 1.19216 0.96243 0.86502 0.84386 1.21540 1.15609 1.16914 1.04297 0.93405 1.25529 0.97207 0.94577 0.99927 1.69976 1.34585 1.19796 1.31034 0.85739 0.79927 0.77698 0.79142 1.19205 1.20386 1.20578 1.17455 0.91952 0.85044 0.99326 1.21164 0.93099 0.98464 1.01790 1.20493 1.01302 0.88567 1.01244 1.18873 0.89885 0.87442 1.04693 1.18607 0.89913 0.87346 1.03260 1.20388 1.00093 0.89967 1.04016 1.86282 1.35569 1.18638 1.83845 1.24035 0.96387 0.87112 0.98836 1.23965 0.93090 0.87941 1.00843 1.86276 1.35599 1.11962 1.89123 0.87957 0.86316 0.85234 0.90156 0.91990 0.91715 0.77500 0.87336 0.88444 0.93954 0.95996 0.92207 0.83831 0.81667 0.87308 0.90330 0.82702 0.82104 0.90319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.95 13.93 67.78 0.94 -3.01 16 2 C -0.19 -4.83 8.77 25.65 0.22 -4.61 16 3 C 0.18 5.50 0.94 -11.54 -0.01 5.49 16 4 C -0.14 -4.37 8.51 71.98 0.61 -3.76 16 5 O -0.56 -18.83 10.84 -131.50 -1.43 -20.25 16 6 C -0.15 -5.25 3.59 29.85 0.11 -5.15 16 7 C 0.52 21.80 7.09 87.66 0.62 22.42 16 8 O -0.56 -25.43 12.72 14.39 0.18 -25.25 16 9 N -0.56 -24.67 2.51 -635.27 -1.59 -26.26 16 10 C 0.26 12.15 4.88 85.63 0.42 12.57 16 11 C -0.55 -28.23 9.16 25.60 0.23 -27.99 16 12 H 0.05 2.56 7.81 -2.91 -0.02 2.54 16 13 C 0.03 1.48 5.46 84.65 0.46 1.94 16 14 N -0.92 -49.27 13.29 21.45 0.28 -48.99 16 15 Si 0.95 41.56 29.54 68.60 2.03 43.59 16 16 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 17 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 18 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 19 C 0.15 6.52 4.75 38.09 0.18 6.70 16 20 C -0.13 -4.57 9.68 22.39 0.22 -4.35 16 21 C -0.10 -3.08 9.95 22.36 0.22 -2.86 16 22 C 0.04 1.20 6.49 22.56 0.15 1.34 16 23 C 0.05 2.02 6.49 22.55 0.15 2.17 16 24 C -0.12 -5.30 9.47 22.49 0.21 -5.08 16 25 O -0.33 -10.73 10.42 -82.63 -0.86 -11.59 16 26 C 0.01 0.22 7.26 72.14 0.52 0.74 16 27 C 0.02 0.29 7.26 72.14 0.52 0.82 16 28 O -0.31 -8.51 10.42 -83.58 -0.87 -9.38 16 29 H 0.10 2.29 6.41 -2.91 -0.02 2.27 16 30 H 0.12 2.13 8.06 -2.91 -0.02 2.11 16 31 H 0.13 2.86 8.06 -2.91 -0.02 2.84 16 32 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.06 2.40 5.51 -2.38 -0.01 2.39 16 35 H 0.38 10.67 8.05 -74.06 -0.60 10.07 16 36 H 0.11 3.60 7.26 -2.39 -0.02 3.58 16 37 H 0.10 3.65 7.91 -2.39 -0.02 3.63 16 38 H 0.04 2.00 6.47 -2.39 -0.02 1.98 16 39 H 0.02 1.11 7.86 -2.39 -0.02 1.09 16 40 H 0.27 13.77 8.31 -92.71 -0.77 13.00 16 41 H 0.14 4.75 8.06 -2.91 -0.02 4.72 16 42 H 0.17 4.09 8.06 -2.91 -0.02 4.06 16 43 H 0.11 4.97 8.06 -2.91 -0.02 4.94 16 44 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.16 1.90 8.14 -2.39 -0.02 1.88 16 46 H 0.16 1.50 8.14 -2.39 -0.02 1.48 16 47 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -68.75 389.49 3.93 -64.82 By element: Atomic # 1 Polarization: 35.53 SS G_CDS: 0.40 Total: 35.92 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: 5.79 Total: -2.61 kcal Atomic # 7 Polarization: -73.94 SS G_CDS: -1.31 Total: -75.25 kcal Atomic # 8 Polarization: -63.50 SS G_CDS: -2.97 Total: -66.47 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Total: -68.75 3.93 -64.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464803856.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.344 kcal (2) G-P(sol) polarization free energy of solvation -68.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds