Wall clock time and date at job start Wed Apr 1 2020 04:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47301 * 2 1 4 4 H 1.08997 * 109.46935 * 305.62345 * 3 2 1 5 5 C 1.53001 * 109.47079 * 65.62235 * 3 2 1 6 6 N 1.46497 * 109.47165 * 175.00338 * 5 3 2 7 7 C 1.34771 * 120.00390 * 180.02562 * 6 5 3 8 8 O 1.21281 * 119.99585 * 359.97438 * 7 6 5 9 9 C 1.50699 * 120.00379 * 179.97438 * 7 6 5 10 10 S 1.81004 * 109.47332 * 179.97438 * 9 7 6 11 11 C 1.76200 * 99.99977 * 179.97438 * 10 9 7 12 12 H 1.07994 * 120.00037 * 0.02562 * 11 10 9 13 13 C 1.38791 * 119.99649 * 179.97438 * 11 10 9 14 14 N 1.31633 * 120.00449 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 119.99729 * 179.97438 * 13 11 10 16 16 H 1.48493 * 109.46997 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46919 * 120.00257 * 15 13 11 18 18 H 1.48495 * 109.47079 * 239.99971 * 15 13 11 19 19 N 1.46902 * 109.47114 * 185.62048 * 3 2 1 20 20 C 1.46904 * 110.99938 * 86.21427 * 19 3 2 21 21 C 1.50701 * 109.46938 * 174.72613 * 20 19 3 22 22 C 1.37971 * 120.07493 * 259.95758 * 21 20 19 23 23 C 1.38340 * 120.15027 * 180.02562 * 22 21 20 24 24 C 1.38384 * 120.30372 * 359.97438 * 23 22 21 25 25 C 1.37926 * 120.15405 * 0.02941 * 24 23 22 26 26 C 1.39607 * 120.07820 * 80.00001 * 21 20 19 27 27 C 1.43206 * 120.14847 * 359.95716 * 26 21 20 28 28 N 4.17038 * 151.05136 * 204.03786 * 2 1 3 29 29 H 1.09003 * 109.47478 * 174.37104 * 1 2 3 30 30 H 1.09002 * 109.47262 * 294.37343 * 1 2 3 31 31 H 1.09004 * 109.47028 * 54.37328 * 1 2 3 32 32 H 1.09001 * 109.47114 * 239.99421 * 2 1 3 33 33 H 1.09002 * 109.47290 * 119.99981 * 2 1 3 34 34 H 1.09003 * 109.46799 * 294.99914 * 5 3 2 35 35 H 1.08992 * 109.47355 * 54.99670 * 5 3 2 36 36 H 0.97003 * 119.99599 * 359.97438 * 6 5 3 37 37 H 1.09003 * 109.46987 * 299.99503 * 9 7 6 38 38 H 1.09000 * 109.47225 * 59.99164 * 9 7 6 39 39 H 0.96998 * 120.00073 * 180.02562 * 14 13 11 40 40 H 1.00901 * 110.99590 * 322.26404 * 19 3 2 41 41 H 1.08999 * 109.46696 * 54.72562 * 20 19 3 42 42 H 1.09004 * 109.46940 * 294.72636 * 20 19 3 43 43 H 1.07996 * 119.92305 * 0.04572 * 22 21 20 44 44 H 1.07991 * 119.84877 * 180.27481 * 23 22 21 45 45 H 1.08000 * 119.92359 * 180.02562 * 24 23 22 46 46 H 1.07999 * 120.08020 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5968 1.9846 -0.8353 5 6 1.6487 2.1218 1.3139 6 7 2.2380 3.4620 1.3652 7 6 2.0269 4.2505 2.4376 8 8 1.3487 3.8506 3.3601 9 6 2.6337 5.6289 2.4906 10 16 2.1706 6.4327 4.0449 11 6 2.9909 7.9793 3.8458 12 1 3.5617 8.1765 2.9505 13 6 2.9026 8.9445 4.8392 14 7 2.2065 8.7044 5.9303 15 14 3.7729 10.5840 4.6285 16 1 4.4823 10.6037 3.3241 17 1 2.7744 11.6827 4.6651 18 1 4.7531 10.7691 5.7285 19 7 3.5028 1.4447 -0.1356 20 6 3.9004 1.3996 -1.5491 21 6 5.3978 1.5337 -1.6541 22 6 5.9621 2.7504 -1.9777 23 6 7.3364 2.8751 -2.0750 24 6 8.1545 1.7822 -1.8484 25 6 7.6037 0.5599 -1.5243 26 6 6.2171 0.4267 -1.4251 27 6 5.6383 -0.8393 -1.0889 28 7 5.1793 -1.8435 -0.8222 29 1 -0.3634 -1.0227 -0.1008 30 1 -0.3634 0.4241 0.9361 31 1 -0.3633 0.5986 -0.8353 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 0.5631 2.1998 1.3733 35 1 2.0168 1.5306 2.1523 36 1 2.7808 3.7817 0.6275 37 1 3.7192 5.5506 2.4310 38 1 2.2656 6.2204 1.6523 39 1 2.1445 9.3791 6.6244 40 1 3.9148 0.6818 0.3804 41 1 3.4237 2.2191 -2.0869 42 1 3.5892 0.4498 -1.9840 43 1 5.3294 3.6075 -2.1550 44 1 7.7731 3.8308 -2.3242 45 1 9.2266 1.8865 -1.9257 46 1 8.2433 -0.2924 -1.3481 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481790319.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:28 Heat of formation + Delta-G solvation = 7.041876 kcal Electronic energy + Delta-G solvation = -26710.613774 eV Core-core repulsion = 22918.992129 eV Total energy + Delta-G solvation = -3791.621645 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.25368 -39.20771 -37.77051 -36.81286 -34.37351 -33.37354 -32.38780 -31.76433 -31.27482 -29.69146 -27.48792 -25.59309 -25.28427 -24.08916 -23.72310 -22.04976 -21.01118 -20.09752 -19.14348 -17.78869 -16.86193 -16.31770 -16.14786 -16.08617 -15.99580 -15.16829 -14.92911 -14.77953 -14.76995 -14.41854 -14.28446 -14.00141 -13.69096 -13.53393 -13.38489 -13.22981 -13.04321 -12.98489 -12.76689 -12.61987 -12.49559 -12.14753 -12.05386 -11.82684 -11.67035 -11.48461 -11.32399 -11.04431 -10.97589 -10.95309 -10.72024 -9.75938 -9.43328 -9.37676 -9.27761 -9.03849 -8.82821 -8.67070 -8.16432 -6.44224 -6.17780 -3.87367 0.30651 0.82468 2.23726 2.53829 3.12546 3.23299 3.24842 3.30222 3.31843 3.37770 3.43252 3.77303 3.90001 4.23011 4.24407 4.26700 4.49107 4.52717 4.56498 4.74911 4.84276 4.88442 5.02318 5.03487 5.14249 5.17274 5.18000 5.28479 5.30333 5.41966 5.45402 5.62691 5.65881 5.69789 5.76500 5.77602 5.89666 5.94064 5.96215 5.98711 5.99493 6.23037 6.32512 6.51210 6.75913 6.92206 7.04861 7.63747 7.93792 8.39505 8.78200 9.27603 10.89725 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.009776 B = 0.002477 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2863.406215 B =11299.973612 C =13594.673901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.150 4.150 3 C 0.075 3.925 4 H 0.088 0.912 5 C 0.135 3.865 6 N -0.724 5.724 7 C 0.529 3.471 8 O -0.525 6.525 9 C -0.150 4.150 10 S -0.063 6.063 11 C -0.533 4.533 12 H 0.073 0.927 13 C 0.072 3.928 14 N -0.868 5.868 15 Si 0.918 3.082 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.280 1.280 19 N -0.675 5.675 20 C 0.088 3.912 21 C -0.030 4.030 22 C -0.100 4.100 23 C -0.086 4.086 24 C -0.121 4.121 25 C -0.071 4.071 26 C -0.029 4.029 27 C 0.250 3.750 28 N -0.413 5.413 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.402 0.598 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.267 0.733 40 H 0.345 0.655 41 H 0.093 0.907 42 H 0.042 0.958 43 H 0.137 0.863 44 H 0.132 0.868 45 H 0.133 0.867 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.603 -16.549 -22.305 29.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.189 4.189 3 C -0.035 4.035 4 H 0.106 0.894 5 C 0.010 3.990 6 N -0.378 5.378 7 C 0.315 3.685 8 O -0.400 6.400 9 C -0.301 4.301 10 S 0.164 5.836 11 C -0.681 4.681 12 H 0.091 0.909 13 C -0.137 4.137 14 N -0.504 5.504 15 Si 0.745 3.255 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.206 1.206 19 N -0.305 5.305 20 C -0.041 4.041 21 C -0.034 4.034 22 C -0.119 4.119 23 C -0.105 4.105 24 C -0.139 4.139 25 C -0.091 4.091 26 C -0.033 4.033 27 C -0.065 4.065 28 N -0.089 5.089 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.237 0.763 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.077 0.923 40 H 0.163 0.837 41 H 0.111 0.889 42 H 0.060 0.940 43 H 0.154 0.846 44 H 0.150 0.850 45 H 0.151 0.849 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 6.732 -18.034 -20.130 27.852 hybrid contribution 1.711 1.029 -1.814 2.698 sum 8.442 -17.005 -21.944 29.017 Atomic orbital electron populations 1.21767 0.94710 1.01917 1.02590 1.22172 0.97566 0.96779 1.02401 1.21972 0.87226 0.95443 0.98838 0.89397 1.21243 0.97957 0.83730 0.96079 1.45761 1.54697 1.15447 1.21913 1.20276 0.80211 0.86415 0.81572 1.90692 1.38423 1.74515 1.36347 1.23499 1.03625 0.95606 1.07386 1.85401 1.68041 1.14105 1.16073 1.22909 1.36838 1.00782 1.07562 0.90920 1.24994 0.95384 0.98795 0.94504 1.70034 1.38484 1.34656 1.07189 0.86126 0.79116 0.82038 0.78262 1.19614 1.20630 1.20613 1.60577 1.08531 1.51916 1.09502 1.21043 0.90753 1.01696 0.90574 1.19792 0.94891 0.92219 0.96452 1.21045 0.95222 0.96504 0.99094 1.21475 0.93587 0.99084 0.96366 1.21137 1.00558 0.92291 0.99914 1.21159 0.92490 0.98504 0.96971 1.15928 0.93296 0.87048 1.07033 1.25769 0.93804 0.93020 0.93899 1.81294 1.07878 1.10975 1.08708 0.92640 0.91774 0.92493 0.91991 0.91325 0.91165 0.91920 0.76334 0.89297 0.89458 0.92301 0.83661 0.88893 0.94007 0.84562 0.84962 0.84905 0.85072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.54 37.16 0.35 -0.80 16 2 C -0.15 -1.17 5.38 -26.73 -0.14 -1.32 16 3 C 0.08 0.61 2.21 -67.71 -0.15 0.46 16 4 H 0.09 0.64 7.70 -51.93 -0.40 0.24 16 5 C 0.14 1.59 5.02 -4.04 -0.02 1.57 16 6 N -0.72 -9.86 5.39 -60.30 -0.32 -10.18 16 7 C 0.53 10.09 7.85 -10.99 -0.09 10.01 16 8 O -0.52 -12.21 15.86 5.56 0.09 -12.12 16 9 C -0.15 -3.08 6.16 36.01 0.22 -2.86 16 10 S -0.06 -1.73 20.57 -107.50 -2.21 -3.94 16 11 C -0.53 -15.24 9.50 30.94 0.29 -14.94 16 12 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 13 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 14 N -0.87 -26.35 13.22 55.49 0.73 -25.62 16 15 Si 0.92 21.42 29.55 -169.99 -5.02 16.39 16 16 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 N -0.67 -5.37 5.65 -107.98 -0.61 -5.98 16 20 C 0.09 0.56 5.11 -4.97 -0.03 0.53 16 21 C -0.03 -0.20 5.47 -104.21 -0.57 -0.77 16 22 C -0.10 -0.56 9.66 -39.64 -0.38 -0.94 16 23 C -0.09 -0.42 10.04 -39.49 -0.40 -0.82 16 24 C -0.12 -0.57 10.03 -39.64 -0.40 -0.97 16 25 C -0.07 -0.40 9.76 -39.17 -0.38 -0.78 16 26 C -0.03 -0.20 5.73 -106.93 -0.61 -0.82 16 27 C 0.25 2.21 13.32 -22.47 -0.30 1.91 16 28 N -0.41 -4.53 18.54 41.84 0.78 -3.75 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.54 6.98 -51.93 -0.36 0.18 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.48 7.52 -51.93 -0.39 0.09 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.87 6.96 -51.93 -0.36 0.51 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.40 4.51 8.14 -40.82 -0.33 4.18 16 37 H 0.09 1.70 8.14 -51.92 -0.42 1.27 16 38 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 39 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 40 H 0.34 3.09 7.81 -39.29 -0.31 2.79 16 41 H 0.09 0.47 7.78 -51.93 -0.40 0.07 16 42 H 0.04 0.28 6.89 -51.93 -0.36 -0.08 16 43 H 0.14 0.58 8.03 -52.49 -0.42 0.16 16 44 H 0.13 0.42 8.06 -52.49 -0.42 0.00 16 45 H 0.13 0.36 8.06 -52.49 -0.42 -0.07 16 46 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 LS Contribution 407.33 15.07 6.14 6.14 Total: -1.00 -35.64 407.33 -9.81 -45.46 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -6.69 Total: 2.16 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -2.69 Total: -8.55 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: 0.57 Total: -45.54 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.09 Total: -12.12 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.73 SS G_CDS: -2.21 Total: -3.94 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -35.64 -9.81 -45.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481790319.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.497 kcal (2) G-P(sol) polarization free energy of solvation -35.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds