Wall clock time and date at job start Wed Apr 1 2020 04:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47301 * 2 1 4 4 H 1.08997 * 109.46935 * 305.62345 * 3 2 1 5 5 C 1.53001 * 109.47079 * 65.62235 * 3 2 1 6 6 N 1.46497 * 109.47165 * 175.00338 * 5 3 2 7 7 C 1.34771 * 120.00390 * 180.02562 * 6 5 3 8 8 O 1.21281 * 119.99585 * 359.97438 * 7 6 5 9 9 C 1.50699 * 120.00379 * 179.97438 * 7 6 5 10 10 S 1.81004 * 109.47332 * 179.97438 * 9 7 6 11 11 C 1.76200 * 99.99977 * 179.97438 * 10 9 7 12 12 H 1.07994 * 120.00037 * 0.02562 * 11 10 9 13 13 C 1.38791 * 119.99649 * 179.97438 * 11 10 9 14 14 N 1.31633 * 120.00449 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 119.99729 * 179.97438 * 13 11 10 16 16 H 1.48493 * 109.46997 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46919 * 120.00257 * 15 13 11 18 18 H 1.48495 * 109.47079 * 239.99971 * 15 13 11 19 19 N 1.46902 * 109.47114 * 185.62048 * 3 2 1 20 20 C 1.46904 * 110.99938 * 86.21427 * 19 3 2 21 21 C 1.50701 * 109.46938 * 174.72613 * 20 19 3 22 22 C 1.37971 * 120.07493 * 259.95758 * 21 20 19 23 23 C 1.38340 * 120.15027 * 180.02562 * 22 21 20 24 24 C 1.38384 * 120.30372 * 359.97438 * 23 22 21 25 25 C 1.37926 * 120.15405 * 0.02941 * 24 23 22 26 26 C 1.39607 * 120.07820 * 80.00001 * 21 20 19 27 27 C 1.43206 * 120.14847 * 359.95716 * 26 21 20 28 28 N 4.17038 * 151.05136 * 204.03786 * 2 1 3 29 29 H 1.09003 * 109.47478 * 174.37104 * 1 2 3 30 30 H 1.09002 * 109.47262 * 294.37343 * 1 2 3 31 31 H 1.09004 * 109.47028 * 54.37328 * 1 2 3 32 32 H 1.09001 * 109.47114 * 239.99421 * 2 1 3 33 33 H 1.09002 * 109.47290 * 119.99981 * 2 1 3 34 34 H 1.09003 * 109.46799 * 294.99914 * 5 3 2 35 35 H 1.08992 * 109.47355 * 54.99670 * 5 3 2 36 36 H 0.97003 * 119.99599 * 359.97438 * 6 5 3 37 37 H 1.09003 * 109.46987 * 299.99503 * 9 7 6 38 38 H 1.09000 * 109.47225 * 59.99164 * 9 7 6 39 39 H 0.96998 * 120.00073 * 180.02562 * 14 13 11 40 40 H 1.00901 * 110.99590 * 322.26404 * 19 3 2 41 41 H 1.08999 * 109.46696 * 54.72562 * 20 19 3 42 42 H 1.09004 * 109.46940 * 294.72636 * 20 19 3 43 43 H 1.07996 * 119.92305 * 0.04572 * 22 21 20 44 44 H 1.07991 * 119.84877 * 180.27481 * 23 22 21 45 45 H 1.08000 * 119.92359 * 180.02562 * 24 23 22 46 46 H 1.07999 * 120.08020 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5968 1.9846 -0.8353 5 6 1.6487 2.1218 1.3139 6 7 2.2380 3.4620 1.3652 7 6 2.0269 4.2505 2.4376 8 8 1.3487 3.8506 3.3601 9 6 2.6337 5.6289 2.4906 10 16 2.1706 6.4327 4.0449 11 6 2.9909 7.9793 3.8458 12 1 3.5617 8.1765 2.9505 13 6 2.9026 8.9445 4.8392 14 7 2.2065 8.7044 5.9303 15 14 3.7729 10.5840 4.6285 16 1 4.4823 10.6037 3.3241 17 1 2.7744 11.6827 4.6651 18 1 4.7531 10.7691 5.7285 19 7 3.5028 1.4447 -0.1356 20 6 3.9004 1.3996 -1.5491 21 6 5.3978 1.5337 -1.6541 22 6 5.9621 2.7504 -1.9777 23 6 7.3364 2.8751 -2.0750 24 6 8.1545 1.7822 -1.8484 25 6 7.6037 0.5599 -1.5243 26 6 6.2171 0.4267 -1.4251 27 6 5.6383 -0.8393 -1.0889 28 7 5.1793 -1.8435 -0.8222 29 1 -0.3634 -1.0227 -0.1008 30 1 -0.3634 0.4241 0.9361 31 1 -0.3633 0.5986 -0.8353 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 0.5631 2.1998 1.3733 35 1 2.0168 1.5306 2.1523 36 1 2.7808 3.7817 0.6275 37 1 3.7192 5.5506 2.4310 38 1 2.2656 6.2204 1.6523 39 1 2.1445 9.3791 6.6244 40 1 3.9148 0.6818 0.3804 41 1 3.4237 2.2191 -2.0869 42 1 3.5892 0.4498 -1.9840 43 1 5.3294 3.6075 -2.1550 44 1 7.7731 3.8308 -2.3242 45 1 9.2266 1.8865 -1.9257 46 1 8.2433 -0.2924 -1.3481 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481790319.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:28 Heat of formation + Delta-G solvation = -16.773774 kcal Electronic energy + Delta-G solvation = -26711.646498 eV Core-core repulsion = 22918.992129 eV Total energy + Delta-G solvation = -3792.654369 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.82139 -40.44688 -38.65263 -37.50092 -35.30907 -34.54792 -34.28654 -32.20513 -31.82269 -31.13702 -28.43178 -27.59937 -26.11355 -24.66770 -24.33508 -22.50470 -21.84865 -21.48229 -19.78223 -19.60585 -17.76549 -17.63343 -16.93246 -16.85664 -16.82385 -16.67176 -16.16479 -16.01250 -15.63249 -15.37339 -15.08604 -14.99066 -14.62182 -14.42751 -14.41272 -14.12066 -14.11231 -13.90886 -13.64876 -13.54013 -13.30386 -13.11691 -13.08646 -12.88321 -12.71110 -12.63780 -12.53512 -12.25864 -12.11985 -11.91334 -11.69100 -11.61639 -11.12496 -10.88385 -10.21606 -9.97881 -9.84719 -9.81868 -9.44653 -8.62345 -8.31024 -6.08655 -0.16238 0.43262 1.31577 1.44414 1.51586 1.57456 1.62394 1.71981 1.97379 2.30310 2.40285 2.79127 2.87145 3.03198 3.25093 3.38512 3.70362 3.72823 3.87791 3.88889 4.12766 4.15990 4.16696 4.32136 4.37119 4.43510 4.46305 4.51211 4.57596 4.59428 4.67243 4.74882 4.77831 4.88064 4.90170 5.03026 5.08488 5.12018 5.30423 5.39546 5.45941 5.50940 5.55478 5.60288 5.88078 5.98164 6.17612 6.24009 6.40717 6.67497 7.10351 7.37902 8.78505 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.009776 B = 0.002477 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2863.406215 B =11299.973612 C =13594.673901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.143 4.143 3 C 0.089 3.911 4 H 0.108 0.892 5 C 0.135 3.865 6 N -0.695 5.695 7 C 0.529 3.471 8 O -0.574 6.574 9 C -0.125 4.125 10 S -0.157 6.157 11 C -0.541 4.541 12 H 0.084 0.916 13 C 0.011 3.989 14 N -0.913 5.913 15 Si 1.000 3.000 16 H -0.254 1.254 17 H -0.275 1.275 18 H -0.275 1.275 19 N -0.680 5.680 20 C 0.090 3.910 21 C -0.037 4.037 22 C -0.106 4.106 23 C -0.086 4.086 24 C -0.122 4.122 25 C -0.075 4.075 26 C -0.049 4.049 27 C 0.270 3.730 28 N -0.461 5.461 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.045 0.955 36 H 0.418 0.582 37 H 0.108 0.892 38 H 0.110 0.890 39 H 0.270 0.730 40 H 0.337 0.663 41 H 0.112 0.888 42 H 0.037 0.963 43 H 0.151 0.849 44 H 0.153 0.847 45 H 0.155 0.845 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.457 -15.150 -25.186 31.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.182 4.182 3 C -0.021 4.021 4 H 0.126 0.874 5 C 0.010 3.990 6 N -0.348 5.348 7 C 0.315 3.685 8 O -0.453 6.453 9 C -0.276 4.276 10 S 0.070 5.930 11 C -0.689 4.689 12 H 0.102 0.898 13 C -0.194 4.194 14 N -0.550 5.550 15 Si 0.821 3.179 16 H -0.177 1.177 17 H -0.201 1.201 18 H -0.201 1.201 19 N -0.309 5.309 20 C -0.038 4.038 21 C -0.040 4.040 22 C -0.125 4.125 23 C -0.105 4.105 24 C -0.140 4.140 25 C -0.095 4.095 26 C -0.053 4.053 27 C -0.044 4.044 28 N -0.137 5.137 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.063 0.937 36 H 0.256 0.744 37 H 0.126 0.874 38 H 0.128 0.872 39 H 0.079 0.921 40 H 0.155 0.845 41 H 0.130 0.870 42 H 0.055 0.945 43 H 0.169 0.831 44 H 0.170 0.830 45 H 0.173 0.827 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 8.608 -16.660 -23.079 29.737 hybrid contribution 1.191 0.520 -1.015 1.649 sum 9.799 -16.140 -24.095 30.612 Atomic orbital electron populations 1.21764 0.94408 1.02327 1.02424 1.22092 0.97737 0.96379 1.02014 1.21823 0.87744 0.95350 0.97184 0.87428 1.21364 0.97595 0.82404 0.97642 1.45498 1.53460 1.15363 1.20495 1.20093 0.79838 0.86359 0.82202 1.90683 1.40842 1.75327 1.38495 1.23329 1.04751 0.96009 1.03509 1.85620 1.69303 1.15922 1.22116 1.23233 1.36800 1.00786 1.08111 0.89776 1.26154 0.96028 1.03261 0.93921 1.70203 1.40203 1.36274 1.08338 0.84891 0.77805 0.76190 0.78965 1.17720 1.20054 1.20084 1.60570 1.08047 1.51621 1.10689 1.21097 0.91055 1.02231 0.89424 1.19842 0.94789 0.92469 0.96883 1.21280 0.95892 0.96461 0.98818 1.21805 0.93446 0.99985 0.95234 1.21441 1.01801 0.91734 0.98979 1.21375 0.92032 0.99492 0.96616 1.16087 0.94100 0.86420 1.08661 1.26100 0.92719 0.92968 0.92607 1.81300 1.09351 1.12388 1.10646 0.92287 0.92922 0.91357 0.91452 0.92625 0.91563 0.93698 0.74418 0.87423 0.87193 0.92095 0.84466 0.87024 0.94460 0.83083 0.82965 0.82736 0.84090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.54 71.98 0.69 -1.47 16 2 C -0.14 -2.12 5.38 30.59 0.16 -1.95 16 3 C 0.09 1.31 2.21 44.92 0.10 1.41 16 4 H 0.11 1.23 7.70 -2.39 -0.02 1.21 16 5 C 0.13 3.06 5.02 86.38 0.43 3.49 16 6 N -0.69 -17.78 5.39 -463.08 -2.50 -20.27 16 7 C 0.53 19.89 7.85 87.66 0.69 20.58 16 8 O -0.57 -27.33 15.86 -3.03 -0.05 -27.37 16 9 C -0.12 -4.96 6.16 71.24 0.44 -4.52 16 10 S -0.16 -8.78 20.57 -56.49 -1.16 -9.94 16 11 C -0.54 -30.84 9.50 67.95 0.65 -30.20 16 12 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 13 C 0.01 0.61 5.49 84.86 0.47 1.08 16 14 N -0.91 -56.42 13.22 21.65 0.29 -56.13 16 15 Si 1.00 43.34 29.55 68.60 2.03 45.37 16 16 H -0.25 -10.14 7.11 99.48 0.71 -9.44 16 17 H -0.28 -11.59 7.11 99.48 0.71 -10.89 16 18 H -0.28 -11.62 7.11 99.48 0.71 -10.92 16 19 N -0.68 -9.69 5.65 -495.55 -2.80 -12.49 16 20 C 0.09 0.95 5.11 85.56 0.44 1.39 16 21 C -0.04 -0.40 5.47 -19.60 -0.11 -0.51 16 22 C -0.11 -0.87 9.66 22.23 0.21 -0.66 16 23 C -0.09 -0.57 10.04 22.33 0.22 -0.35 16 24 C -0.12 -0.81 10.03 22.23 0.22 -0.59 16 25 C -0.07 -0.71 9.76 22.54 0.22 -0.49 16 26 C -0.05 -0.63 5.73 -21.36 -0.12 -0.75 16 27 C 0.27 4.72 13.32 88.33 1.18 5.90 16 28 N -0.46 -10.29 18.54 19.00 0.35 -9.94 16 29 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.05 0.87 6.98 -2.39 -0.02 0.86 16 31 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.07 0.97 7.52 -2.39 -0.02 0.95 16 33 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.07 1.61 6.96 -2.39 -0.02 1.60 16 35 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.42 8.12 8.14 -92.71 -0.75 7.37 16 37 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16 38 H 0.11 3.88 8.14 -2.40 -0.02 3.86 16 39 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 40 H 0.34 5.82 7.81 -89.69 -0.70 5.12 16 41 H 0.11 0.76 7.78 -2.39 -0.02 0.74 16 42 H 0.04 0.44 6.89 -2.38 -0.02 0.42 16 43 H 0.15 0.74 8.03 -2.91 -0.02 0.72 16 44 H 0.15 0.38 8.06 -2.92 -0.02 0.36 16 45 H 0.15 0.32 8.06 -2.91 -0.02 0.30 16 46 H 0.14 0.97 8.06 -2.91 -0.02 0.95 16 Total: -1.00 -80.18 407.33 1.60 -78.57 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: -0.44 Total: 19.86 kcal Atomic # 6 Polarization: -13.54 SS G_CDS: 5.89 Total: -7.65 kcal Atomic # 7 Polarization: -94.18 SS G_CDS: -4.66 Total: -98.84 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -0.05 Total: -27.37 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Atomic # 16 Polarization: -8.78 SS G_CDS: -1.16 Total: -9.94 kcal Total: -80.18 1.60 -78.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481790319.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.801 kcal (2) G-P(sol) polarization free energy of solvation -80.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds