Wall clock time and date at job start Wed Apr 1 2020 04:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46991 * 2 1 4 4 H 1.08997 * 109.47190 * 305.62257 * 3 2 1 5 5 C 1.52998 * 109.47185 * 65.62084 * 3 2 1 6 6 N 1.46504 * 109.47187 * 174.99700 * 5 3 2 7 7 C 1.34775 * 119.99954 * 180.02562 * 6 5 3 8 8 O 1.21278 * 120.00208 * 359.97438 * 7 6 5 9 9 C 1.50697 * 119.99901 * 180.02562 * 7 6 5 10 10 S 1.81000 * 109.47371 * 179.97438 * 9 7 6 11 11 C 1.76193 * 100.00445 * 179.97438 * 10 9 7 12 12 H 1.08007 * 119.99927 * 0.02562 * 11 10 9 13 13 C 1.38802 * 120.00370 * 179.97438 * 11 10 9 14 14 N 1.31628 * 119.99841 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00082 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47137 * 90.00071 * 15 13 11 17 17 H 1.48503 * 109.46899 * 209.99914 * 15 13 11 18 18 H 1.48504 * 109.47407 * 329.99987 * 15 13 11 19 19 N 1.46902 * 109.46985 * 185.62169 * 3 2 1 20 20 C 1.46899 * 111.00059 * 86.21714 * 19 3 2 21 21 C 1.50697 * 109.47276 * 174.81581 * 20 19 3 22 22 C 1.38361 * 119.85263 * 89.99520 * 21 20 19 23 23 C 1.37944 * 120.15261 * 180.02562 * 22 21 20 24 24 C 1.39630 * 119.84657 * 359.97438 * 23 22 21 25 25 C 1.43202 * 120.14796 * 180.02562 * 24 23 22 26 26 N 9.60305 * 162.76572 * 314.63602 * 2 1 3 27 27 C 1.39623 * 119.70105 * 0.27240 * 24 23 22 28 28 C 1.37952 * 119.84368 * 359.49128 * 27 24 23 29 29 H 1.09002 * 109.47103 * 174.36769 * 1 2 3 30 30 H 1.08997 * 109.47236 * 294.36916 * 1 2 3 31 31 H 1.09002 * 109.47098 * 54.37359 * 1 2 3 32 32 H 1.09005 * 109.47233 * 240.00076 * 2 1 3 33 33 H 1.08998 * 109.47385 * 119.99811 * 2 1 3 34 34 H 1.08997 * 109.47001 * 295.00115 * 5 3 2 35 35 H 1.09001 * 109.46841 * 54.99974 * 5 3 2 36 36 H 0.96999 * 119.99876 * 0.02562 * 6 5 3 37 37 H 1.09006 * 109.47185 * 299.99623 * 9 7 6 38 38 H 1.09001 * 109.47452 * 59.99864 * 9 7 6 39 39 H 0.96998 * 120.00120 * 179.97438 * 14 13 11 40 40 H 1.00898 * 111.00242 * 322.25791 * 19 3 2 41 41 H 1.08998 * 109.47804 * 54.80855 * 20 19 3 42 42 H 1.09004 * 109.46776 * 294.80938 * 20 19 3 43 43 H 1.08000 * 119.92117 * 0.02562 * 22 21 20 44 44 H 1.08008 * 120.07677 * 179.97438 * 23 22 21 45 45 H 1.08001 * 120.08080 * 179.72065 * 27 24 23 46 46 H 1.08001 * 119.92287 * 180.22934 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5968 1.9846 -0.8353 5 6 1.6486 2.1218 1.3139 6 7 2.2380 3.4621 1.3652 7 6 2.0268 4.2505 2.4377 8 8 1.3485 3.8507 3.3601 9 6 2.6326 5.6293 2.4902 10 16 2.1698 6.4330 4.0445 11 6 2.9889 7.9801 3.8450 12 1 3.5592 8.1776 2.9493 13 6 2.9005 8.9455 4.8383 14 7 2.2050 8.7050 5.9297 15 14 3.7683 10.5860 4.6264 16 1 2.8546 11.5466 3.9573 17 1 4.1557 11.1168 5.9581 18 1 4.9847 10.3989 3.7952 19 7 3.5027 1.4447 -0.1357 20 6 3.9004 1.3998 -1.5491 21 6 5.3979 1.5316 -1.6541 22 6 6.1922 0.3989 -1.6331 23 6 7.5636 0.5124 -1.7282 24 6 8.1499 1.7742 -1.8464 25 6 9.5730 1.8995 -1.9462 26 7 10.7019 1.9990 -2.0246 27 6 7.3428 2.9134 -1.8618 28 6 5.9723 2.7850 -1.7707 29 1 -0.3633 -1.0227 -0.1009 30 1 -0.3633 0.4240 0.9361 31 1 -0.3633 0.5986 -0.8353 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.5630 2.1997 1.3733 35 1 2.0169 1.5306 2.1523 36 1 2.7802 3.7820 0.6273 37 1 3.7183 5.5518 2.4301 38 1 2.2637 6.2205 1.6521 39 1 2.1435 9.3795 6.6241 40 1 3.9149 0.6820 0.3804 41 1 3.4248 2.2201 -2.0867 42 1 3.5879 0.4505 -1.9844 43 1 5.7373 -0.5764 -1.5420 44 1 8.1825 -0.3726 -1.7113 45 1 7.7901 3.8926 -1.9484 46 1 5.3465 3.6651 -1.7862 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481790851.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:33 Heat of formation + Delta-G solvation = 5.514025 kcal Electronic energy + Delta-G solvation = -26220.755590 eV Core-core repulsion = 22429.067693 eV Total energy + Delta-G solvation = -3791.687897 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.12804 -39.25219 -37.90063 -36.79860 -34.33934 -33.40215 -32.39207 -31.56553 -31.41023 -29.73098 -27.64389 -25.74974 -25.35429 -23.84536 -23.27033 -22.37503 -21.07401 -20.12488 -19.36652 -17.80724 -16.86723 -16.28237 -16.14716 -16.02100 -15.78425 -15.10891 -14.91326 -14.82711 -14.77308 -14.40533 -14.35376 -14.00837 -13.80135 -13.63349 -13.42199 -13.29837 -13.05070 -12.97038 -12.82424 -12.52638 -12.50200 -12.21934 -12.05561 -11.77873 -11.66259 -11.49999 -11.37078 -11.03555 -10.99678 -10.98314 -10.72781 -9.77446 -9.49766 -9.33158 -9.28233 -9.03403 -8.83480 -8.69625 -8.17989 -6.45070 -6.18162 -3.87895 0.28484 0.87890 2.29372 2.50408 3.11675 3.22334 3.24768 3.30777 3.35262 3.38287 3.48103 3.75034 3.88573 4.24241 4.27578 4.30707 4.41141 4.46038 4.53377 4.74205 4.79791 4.83191 5.02040 5.07374 5.13569 5.16020 5.16984 5.26569 5.29928 5.38105 5.50294 5.58597 5.60455 5.66525 5.71006 5.72765 5.83550 5.90381 5.92010 5.97929 6.05287 6.21813 6.32266 6.50638 6.75542 6.94174 7.10135 7.63093 7.91010 8.38834 8.75819 9.27227 10.89285 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.007143 B = 0.002543 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3918.929747 B =11008.942511 C =14516.882580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.149 4.149 3 C 0.075 3.925 4 H 0.086 0.914 5 C 0.134 3.866 6 N -0.724 5.724 7 C 0.530 3.470 8 O -0.525 6.525 9 C -0.151 4.151 10 S -0.062 6.062 11 C -0.534 4.534 12 H 0.072 0.928 13 C 0.073 3.927 14 N -0.868 5.868 15 Si 0.918 3.082 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.272 1.272 19 N -0.677 5.677 20 C 0.092 3.908 21 C -0.051 4.051 22 C -0.115 4.115 23 C -0.071 4.071 24 C -0.031 4.031 25 C 0.254 3.746 26 N -0.419 5.419 27 C -0.068 4.068 28 C -0.096 4.096 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.402 0.598 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.268 0.732 40 H 0.348 0.652 41 H 0.086 0.914 42 H 0.044 0.956 43 H 0.130 0.870 44 H 0.131 0.869 45 H 0.134 0.866 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.895 -20.587 -21.019 29.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.189 4.189 3 C -0.035 4.035 4 H 0.104 0.896 5 C 0.009 3.991 6 N -0.379 5.379 7 C 0.316 3.684 8 O -0.400 6.400 9 C -0.302 4.302 10 S 0.164 5.836 11 C -0.682 4.682 12 H 0.090 0.910 13 C -0.136 4.136 14 N -0.504 5.504 15 Si 0.744 3.256 16 H -0.203 1.203 17 H -0.208 1.208 18 H -0.197 1.197 19 N -0.308 5.308 20 C -0.036 4.036 21 C -0.052 4.052 22 C -0.134 4.134 23 C -0.091 4.091 24 C -0.034 4.034 25 C -0.061 4.061 26 N -0.094 5.094 27 C -0.089 4.089 28 C -0.115 4.115 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.237 0.763 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.078 0.922 40 H 0.167 0.833 41 H 0.105 0.895 42 H 0.062 0.938 43 H 0.148 0.852 44 H 0.149 0.851 45 H 0.152 0.848 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.506 -20.348 -19.377 28.316 hybrid contribution 1.061 0.656 -1.689 2.099 sum 4.567 -19.692 -21.066 29.196 Atomic orbital electron populations 1.21781 0.94880 1.01890 1.02631 1.22181 0.97471 0.96856 1.02362 1.21957 0.87410 0.95398 0.98702 0.89567 1.21257 0.97918 0.83750 0.96182 1.45764 1.54739 1.15486 1.21872 1.20269 0.80172 0.86408 0.81573 1.90691 1.38409 1.74526 1.36371 1.23503 1.03641 0.95625 1.07414 1.85381 1.68097 1.14054 1.16036 1.22870 1.36991 1.00781 1.07560 0.90975 1.24987 0.95367 0.98779 0.94486 1.70019 1.38473 1.34713 1.07147 0.86184 0.79563 0.82152 0.77691 1.20314 1.20798 1.19690 1.60515 1.08277 1.52192 1.09798 1.21003 0.90840 1.01569 0.90214 1.20029 0.95535 0.93184 0.96454 1.20972 0.92915 0.98677 1.00832 1.21126 0.95140 0.95789 0.97061 1.16022 0.84436 0.95098 1.07893 1.25770 0.92753 0.93867 0.93755 1.81276 1.12079 1.07197 1.08813 1.21248 0.93558 0.97591 0.96479 1.21034 0.94116 0.97588 0.98737 0.92653 0.91819 0.92523 0.91804 0.91219 0.91291 0.91881 0.76349 0.89300 0.89467 0.92241 0.83323 0.89536 0.93769 0.85227 0.85085 0.84806 0.84513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.54 37.16 0.35 -0.52 16 2 C -0.15 -0.76 5.38 -26.73 -0.14 -0.90 16 3 C 0.08 0.47 2.21 -67.71 -0.15 0.32 16 4 H 0.09 0.51 7.70 -51.93 -0.40 0.11 16 5 C 0.13 1.39 5.02 -4.04 -0.02 1.37 16 6 N -0.72 -9.22 5.39 -60.30 -0.32 -9.55 16 7 C 0.53 9.78 7.85 -10.99 -0.09 9.69 16 8 O -0.52 -11.89 15.86 5.56 0.09 -11.80 16 9 C -0.15 -3.04 6.16 36.00 0.22 -2.82 16 10 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 11 C -0.53 -15.23 9.50 30.94 0.29 -14.94 16 12 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 13 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 14 N -0.87 -26.28 13.22 55.49 0.73 -25.54 16 15 Si 0.92 21.47 29.55 -169.99 -5.02 16.44 16 16 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 19 N -0.68 -3.80 5.65 -107.99 -0.61 -4.41 16 20 C 0.09 0.38 5.63 -4.98 -0.03 0.35 16 21 C -0.05 -0.25 5.44 -104.53 -0.57 -0.82 16 22 C -0.12 -0.52 9.68 -39.64 -0.38 -0.90 16 23 C -0.07 -0.37 9.76 -39.17 -0.38 -0.76 16 24 C -0.03 -0.21 5.73 -106.93 -0.61 -0.82 16 25 C 0.25 2.33 15.33 -22.47 -0.34 1.98 16 26 N -0.42 -4.93 18.54 41.84 0.78 -4.15 16 27 C -0.07 -0.42 9.76 -39.17 -0.38 -0.81 16 28 C -0.10 -0.54 9.68 -39.64 -0.38 -0.92 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.44 6.98 -51.93 -0.36 0.08 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.26 7.51 -51.93 -0.39 -0.13 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.77 6.96 -51.93 -0.36 0.41 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.40 4.19 8.14 -40.82 -0.33 3.86 16 37 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 38 H 0.09 1.61 8.14 -51.91 -0.42 1.19 16 39 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 40 H 0.35 1.90 8.51 -39.29 -0.33 1.57 16 41 H 0.09 0.34 7.87 -51.93 -0.41 -0.07 16 42 H 0.04 0.14 7.49 -51.93 -0.39 -0.25 16 43 H 0.13 0.34 8.06 -52.49 -0.42 -0.09 16 44 H 0.13 0.50 8.06 -52.48 -0.42 0.08 16 45 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 46 H 0.14 0.64 8.06 -52.49 -0.42 0.21 16 LS Contribution 410.63 15.07 6.19 6.19 Total: -1.00 -35.97 410.63 -9.85 -45.82 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -6.75 Total: -0.58 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: -2.71 Total: -8.50 kcal Atomic # 7 Polarization: -44.23 SS G_CDS: 0.57 Total: -43.66 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.09 Total: -11.80 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -35.97 -9.85 -45.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481790851.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.332 kcal (2) G-P(sol) polarization free energy of solvation -35.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds