Wall clock time and date at job start Wed Apr 1 2020 04:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46991 * 2 1 4 4 H 1.08997 * 109.47190 * 305.62257 * 3 2 1 5 5 C 1.52998 * 109.47185 * 65.62084 * 3 2 1 6 6 N 1.46504 * 109.47187 * 174.99700 * 5 3 2 7 7 C 1.34775 * 119.99954 * 180.02562 * 6 5 3 8 8 O 1.21278 * 120.00208 * 359.97438 * 7 6 5 9 9 C 1.50697 * 119.99901 * 180.02562 * 7 6 5 10 10 S 1.81000 * 109.47371 * 179.97438 * 9 7 6 11 11 C 1.76193 * 100.00445 * 179.97438 * 10 9 7 12 12 H 1.08007 * 119.99927 * 0.02562 * 11 10 9 13 13 C 1.38802 * 120.00370 * 179.97438 * 11 10 9 14 14 N 1.31628 * 119.99841 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00082 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47137 * 90.00071 * 15 13 11 17 17 H 1.48503 * 109.46899 * 209.99914 * 15 13 11 18 18 H 1.48504 * 109.47407 * 329.99987 * 15 13 11 19 19 N 1.46902 * 109.46985 * 185.62169 * 3 2 1 20 20 C 1.46899 * 111.00059 * 86.21714 * 19 3 2 21 21 C 1.50697 * 109.47276 * 174.81581 * 20 19 3 22 22 C 1.38361 * 119.85263 * 89.99520 * 21 20 19 23 23 C 1.37944 * 120.15261 * 180.02562 * 22 21 20 24 24 C 1.39630 * 119.84657 * 359.97438 * 23 22 21 25 25 C 1.43202 * 120.14796 * 180.02562 * 24 23 22 26 26 N 9.60305 * 162.76572 * 314.63602 * 2 1 3 27 27 C 1.39623 * 119.70105 * 0.27240 * 24 23 22 28 28 C 1.37952 * 119.84368 * 359.49128 * 27 24 23 29 29 H 1.09002 * 109.47103 * 174.36769 * 1 2 3 30 30 H 1.08997 * 109.47236 * 294.36916 * 1 2 3 31 31 H 1.09002 * 109.47098 * 54.37359 * 1 2 3 32 32 H 1.09005 * 109.47233 * 240.00076 * 2 1 3 33 33 H 1.08998 * 109.47385 * 119.99811 * 2 1 3 34 34 H 1.08997 * 109.47001 * 295.00115 * 5 3 2 35 35 H 1.09001 * 109.46841 * 54.99974 * 5 3 2 36 36 H 0.96999 * 119.99876 * 0.02562 * 6 5 3 37 37 H 1.09006 * 109.47185 * 299.99623 * 9 7 6 38 38 H 1.09001 * 109.47452 * 59.99864 * 9 7 6 39 39 H 0.96998 * 120.00120 * 179.97438 * 14 13 11 40 40 H 1.00898 * 111.00242 * 322.25791 * 19 3 2 41 41 H 1.08998 * 109.47804 * 54.80855 * 20 19 3 42 42 H 1.09004 * 109.46776 * 294.80938 * 20 19 3 43 43 H 1.08000 * 119.92117 * 0.02562 * 22 21 20 44 44 H 1.08008 * 120.07677 * 179.97438 * 23 22 21 45 45 H 1.08001 * 120.08080 * 179.72065 * 27 24 23 46 46 H 1.08001 * 119.92287 * 180.22934 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5968 1.9846 -0.8353 5 6 1.6486 2.1218 1.3139 6 7 2.2380 3.4621 1.3652 7 6 2.0268 4.2505 2.4377 8 8 1.3485 3.8507 3.3601 9 6 2.6326 5.6293 2.4902 10 16 2.1698 6.4330 4.0445 11 6 2.9889 7.9801 3.8450 12 1 3.5592 8.1776 2.9493 13 6 2.9005 8.9455 4.8383 14 7 2.2050 8.7050 5.9297 15 14 3.7683 10.5860 4.6264 16 1 2.8546 11.5466 3.9573 17 1 4.1557 11.1168 5.9581 18 1 4.9847 10.3989 3.7952 19 7 3.5027 1.4447 -0.1357 20 6 3.9004 1.3998 -1.5491 21 6 5.3979 1.5316 -1.6541 22 6 6.1922 0.3989 -1.6331 23 6 7.5636 0.5124 -1.7282 24 6 8.1499 1.7742 -1.8464 25 6 9.5730 1.8995 -1.9462 26 7 10.7019 1.9990 -2.0246 27 6 7.3428 2.9134 -1.8618 28 6 5.9723 2.7850 -1.7707 29 1 -0.3633 -1.0227 -0.1009 30 1 -0.3633 0.4240 0.9361 31 1 -0.3633 0.5986 -0.8353 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.5630 2.1997 1.3733 35 1 2.0169 1.5306 2.1523 36 1 2.7802 3.7820 0.6273 37 1 3.7183 5.5518 2.4301 38 1 2.2637 6.2205 1.6521 39 1 2.1435 9.3795 6.6241 40 1 3.9149 0.6820 0.3804 41 1 3.4248 2.2201 -2.0867 42 1 3.5879 0.4505 -1.9844 43 1 5.7373 -0.5764 -1.5420 44 1 8.1825 -0.3726 -1.7113 45 1 7.7901 3.8926 -1.9484 46 1 5.3465 3.6651 -1.7862 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481790851.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:32 Heat of formation + Delta-G solvation = -18.606285 kcal Electronic energy + Delta-G solvation = -26221.801525 eV Core-core repulsion = 22429.067693 eV Total energy + Delta-G solvation = -3792.733833 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.68039 -40.37716 -38.65435 -37.53375 -35.21061 -34.55400 -34.17774 -31.95055 -31.87703 -31.13003 -28.45946 -27.61170 -26.29018 -24.40837 -23.65672 -22.78652 -21.77640 -21.40493 -19.85746 -19.75534 -17.73734 -17.57897 -16.85357 -16.79756 -16.68275 -16.49364 -16.04107 -15.87877 -15.50027 -15.36461 -15.05962 -14.96610 -14.57833 -14.37965 -14.33466 -14.21930 -14.05219 -13.97886 -13.59617 -13.47152 -13.31833 -13.12830 -12.96236 -12.86349 -12.65440 -12.59646 -12.45143 -12.12583 -11.98268 -11.87550 -11.69724 -11.47296 -11.11538 -10.84782 -10.22335 -9.91931 -9.88222 -9.74737 -9.24710 -8.62252 -8.31757 -6.08903 -0.18788 0.49892 1.31189 1.44011 1.50528 1.59307 1.61533 1.74871 1.92045 2.29878 2.45674 2.85814 2.91016 3.02277 3.34917 3.40473 3.87429 3.90195 3.96232 4.03409 4.06531 4.19203 4.29827 4.37394 4.41421 4.47589 4.53543 4.58300 4.61450 4.75797 4.76720 4.88052 4.90371 4.98068 5.02316 5.15251 5.19429 5.29516 5.31998 5.42350 5.44690 5.45019 5.63175 5.67370 5.94420 6.09634 6.22900 6.42481 6.50578 6.71352 7.09678 7.41701 8.77456 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.007143 B = 0.002543 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3918.929747 B =11008.942511 C =14516.882580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.141 4.141 3 C 0.091 3.909 4 H 0.099 0.901 5 C 0.131 3.869 6 N -0.695 5.695 7 C 0.530 3.470 8 O -0.575 6.575 9 C -0.127 4.127 10 S -0.154 6.154 11 C -0.544 4.544 12 H 0.082 0.918 13 C 0.012 3.988 14 N -0.912 5.912 15 Si 0.997 3.003 16 H -0.267 1.267 17 H -0.279 1.279 18 H -0.258 1.258 19 N -0.687 5.687 20 C 0.096 3.904 21 C -0.048 4.048 22 C -0.112 4.112 23 C -0.070 4.070 24 C -0.050 4.050 25 C 0.277 3.723 26 N -0.475 5.475 27 C -0.075 4.075 28 C -0.104 4.104 29 H 0.060 0.940 30 H 0.044 0.956 31 H 0.061 0.939 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.049 0.951 36 H 0.417 0.583 37 H 0.106 0.894 38 H 0.108 0.892 39 H 0.270 0.730 40 H 0.350 0.650 41 H 0.093 0.907 42 H 0.063 0.937 43 H 0.154 0.846 44 H 0.144 0.856 45 H 0.136 0.864 46 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.047 -21.236 -23.582 31.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.181 4.181 3 C -0.019 4.019 4 H 0.117 0.883 5 C 0.006 3.994 6 N -0.348 5.348 7 C 0.315 3.685 8 O -0.454 6.454 9 C -0.278 4.278 10 S 0.073 5.927 11 C -0.692 4.692 12 H 0.101 0.899 13 C -0.192 4.192 14 N -0.549 5.549 15 Si 0.819 3.181 16 H -0.193 1.193 17 H -0.205 1.205 18 H -0.182 1.182 19 N -0.318 5.318 20 C -0.032 4.032 21 C -0.049 4.049 22 C -0.130 4.130 23 C -0.090 4.090 24 C -0.054 4.054 25 C -0.037 4.037 26 N -0.151 5.151 27 C -0.096 4.096 28 C -0.123 4.123 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.255 0.745 37 H 0.124 0.876 38 H 0.126 0.874 39 H 0.079 0.921 40 H 0.170 0.830 41 H 0.112 0.888 42 H 0.081 0.919 43 H 0.172 0.828 44 H 0.162 0.838 45 H 0.154 0.846 46 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 3.680 -21.025 -22.008 30.658 hybrid contribution 0.936 0.723 -0.969 1.529 sum 4.616 -20.302 -22.976 31.007 Atomic orbital electron populations 1.21795 0.95531 1.02229 1.01860 1.22122 0.96779 0.95958 1.03224 1.21762 0.88089 0.95785 0.96276 0.88316 1.21461 0.97308 0.82194 0.98436 1.45525 1.53406 1.15631 1.20247 1.20029 0.79836 0.86261 0.82355 1.90680 1.40846 1.75313 1.38560 1.23345 1.04715 0.96318 1.03409 1.85568 1.69302 1.15712 1.22143 1.23203 1.36958 1.00930 1.08063 0.89939 1.26118 0.96012 1.03150 0.93938 1.70186 1.40151 1.36269 1.08249 0.84970 0.78630 0.76573 0.77907 1.19260 1.20451 1.18196 1.60433 1.07643 1.52669 1.11039 1.21033 0.90056 1.02926 0.89202 1.20204 0.96179 0.93020 0.95508 1.21243 0.92375 0.99706 0.99720 1.21338 0.95897 0.95518 0.96256 1.16154 0.83117 0.96239 1.09889 1.26174 0.93107 0.92272 0.92134 1.81284 1.13676 1.08978 1.11141 1.21350 0.94037 0.97574 0.96593 1.21209 0.93813 0.98450 0.98815 0.92072 0.93658 0.91995 0.89656 0.91582 0.92169 0.93249 0.74523 0.87586 0.87391 0.92071 0.83032 0.88845 0.91861 0.82799 0.83843 0.84621 0.83597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 9.54 71.98 0.69 -0.78 16 2 C -0.14 -1.00 5.38 30.59 0.16 -0.83 16 3 C 0.09 0.84 2.21 44.91 0.10 0.94 16 4 H 0.10 0.75 7.70 -2.39 -0.02 0.73 16 5 C 0.13 2.51 5.02 86.38 0.43 2.94 16 6 N -0.70 -16.37 5.39 -463.07 -2.50 -18.86 16 7 C 0.53 19.24 7.85 87.66 0.69 19.93 16 8 O -0.57 -26.59 15.86 -3.02 -0.05 -26.63 16 9 C -0.13 -4.98 6.16 71.24 0.44 -4.54 16 10 S -0.15 -8.61 20.57 -56.49 -1.16 -9.77 16 11 C -0.54 -31.08 9.50 67.95 0.65 -30.44 16 12 H 0.08 4.37 7.80 -2.91 -0.02 4.34 16 13 C 0.01 0.71 5.49 84.86 0.47 1.17 16 14 N -0.91 -56.30 13.22 21.65 0.29 -56.02 16 15 Si 1.00 43.72 29.55 68.60 2.03 45.75 16 16 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 17 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 18 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 19 N -0.69 -5.24 5.65 -495.58 -2.80 -8.05 16 20 C 0.10 0.38 5.63 85.56 0.48 0.86 16 21 C -0.05 -0.31 5.44 -19.81 -0.11 -0.42 16 22 C -0.11 -0.62 9.68 22.23 0.22 -0.40 16 23 C -0.07 -0.59 9.76 22.54 0.22 -0.37 16 24 C -0.05 -0.63 5.73 -21.36 -0.12 -0.75 16 25 C 0.28 5.08 15.33 88.33 1.35 6.43 16 26 N -0.47 -11.48 18.54 19.00 0.35 -11.13 16 27 C -0.08 -0.83 9.76 22.54 0.22 -0.61 16 28 C -0.10 -0.90 9.68 22.23 0.22 -0.69 16 29 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.04 0.59 6.98 -2.39 -0.02 0.57 16 31 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.08 0.31 7.51 -2.38 -0.02 0.29 16 33 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.06 1.31 6.96 -2.39 -0.02 1.29 16 35 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.42 7.39 8.14 -92.71 -0.75 6.63 16 37 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 38 H 0.11 3.79 8.14 -2.40 -0.02 3.77 16 39 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 40 H 0.35 2.59 8.51 -89.70 -0.76 1.82 16 41 H 0.09 0.30 7.87 -2.39 -0.02 0.29 16 42 H 0.06 0.07 7.49 -2.38 -0.02 0.05 16 43 H 0.15 0.11 8.06 -2.91 -0.02 0.09 16 44 H 0.14 0.79 8.06 -2.91 -0.02 0.77 16 45 H 0.14 1.34 8.06 -2.91 -0.02 1.32 16 46 H 0.15 0.95 8.06 -2.91 -0.02 0.92 16 Total: -1.00 -81.68 410.63 1.75 -79.93 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -0.51 Total: 12.33 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: 6.10 Total: -7.55 kcal Atomic # 7 Polarization: -89.40 SS G_CDS: -4.66 Total: -94.06 kcal Atomic # 8 Polarization: -26.59 SS G_CDS: -0.05 Total: -26.63 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 16 Polarization: -8.61 SS G_CDS: -1.16 Total: -9.77 kcal Total: -81.68 1.75 -79.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481790851.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.324 kcal (2) G-P(sol) polarization free energy of solvation -81.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds