Wall clock time and date at job start Wed Apr 1 2020 05:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 F 1.39898 * 109.46990 * 2 1 4 4 F 1.39901 * 109.47218 * 239.99654 * 2 1 3 5 5 C 1.50696 * 109.46911 * 119.99585 * 2 1 3 6 6 O 1.21282 * 120.00651 * 335.00357 * 5 2 1 7 7 N 1.34782 * 119.99824 * 155.00033 * 5 2 1 8 8 C 1.46506 * 120.00010 * 180.02562 * 7 5 2 9 9 H 1.09003 * 111.00294 * 322.28381 * 8 7 5 10 10 C 1.55014 * 111.10626 * 86.45030 * 8 7 5 11 11 O 1.43907 * 105.17659 * 81.91311 * 10 8 7 12 12 C 1.42409 * 109.56874 * 24.28955 * 11 10 8 13 13 C 1.52731 * 116.09576 * 129.74186 * 12 11 10 14 14 N 1.47622 * 87.80902 * 90.81792 * 13 12 11 15 15 C 1.46910 * 110.99603 * 138.09024 * 14 13 12 16 16 C 1.50700 * 109.46829 * 169.99782 * 15 14 13 17 17 O 1.21298 * 120.00185 * 0.02562 * 16 15 14 18 18 N 1.34777 * 120.00040 * 179.97438 * 16 15 14 19 19 C 1.37094 * 120.00263 * 180.02562 * 18 16 15 20 20 H 1.08003 * 120.00134 * 0.02562 * 19 18 16 21 21 C 1.38947 * 119.99982 * 180.02562 * 19 18 16 22 22 N 1.31408 * 120.00247 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99966 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47396 * 90.00060 * 23 21 19 25 25 H 1.48503 * 109.47503 * 209.99995 * 23 21 19 26 26 H 1.48504 * 109.47293 * 330.00191 * 23 21 19 27 27 C 1.47622 * 88.00116 * 26.33118 * 14 13 12 28 28 C 1.53670 * 108.51355 * 358.09577 * 12 11 10 29 29 H 1.08998 * 109.47201 * 300.00578 * 1 2 3 30 30 H 1.08998 * 109.46740 * 60.00057 * 1 2 3 31 31 H 1.08998 * 109.46953 * 180.02562 * 1 2 3 32 32 H 0.96992 * 120.00225 * 0.02562 * 7 5 2 33 33 H 1.08998 * 110.30310 * 322.98581 * 10 8 7 34 34 H 1.08997 * 110.38319 * 200.87660 * 10 8 7 35 35 H 1.09002 * 113.50966 * 336.06787 * 13 12 11 36 36 H 1.09001 * 113.50651 * 205.56796 * 13 12 11 37 37 H 1.09003 * 109.47066 * 289.99624 * 15 14 13 38 38 H 1.08998 * 109.47133 * 50.00147 * 15 14 13 39 39 H 0.97007 * 119.99591 * 0.02562 * 18 16 15 40 40 H 0.96997 * 120.00414 * 179.97438 * 22 21 19 41 41 H 1.09003 * 113.50408 * 88.35275 * 27 14 13 42 42 H 1.08999 * 113.50598 * 218.84930 * 27 14 13 43 43 H 1.09001 * 110.92911 * 97.28619 * 28 12 11 44 44 H 1.08998 * 110.92863 * 220.94281 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9964 -0.6596 -1.1422 5 6 2.0323 -0.7103 1.2305 6 8 1.3370 -0.7704 2.2224 7 7 3.2543 -1.2789 1.2287 8 6 3.7424 -1.9699 2.4248 9 1 3.4327 -1.4489 3.3308 10 6 3.2769 -3.4484 2.4443 11 8 4.2102 -4.1484 1.6019 12 6 5.4381 -3.4291 1.5498 13 6 6.7032 -4.2384 1.8280 14 7 6.7874 -4.4989 0.3774 15 6 8.1726 -4.3842 -0.0984 16 6 8.2607 -4.8915 -1.5148 17 8 7.2673 -5.3071 -2.0731 18 7 9.4431 -4.8823 -2.1615 19 6 9.5232 -5.3432 -3.4501 20 1 8.6387 -5.7134 -3.9473 21 6 10.7424 -5.3342 -4.1167 22 7 11.8185 -4.8835 -3.5120 23 14 10.8514 -5.9616 -5.8728 24 1 10.6100 -4.8397 -6.8152 25 1 12.2030 -6.5279 -6.1132 26 1 9.8278 -7.0162 -6.0862 27 6 6.0476 -3.2399 0.1607 28 6 5.2867 -2.1445 2.3795 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.8106 -1.2306 0.4357 33 1 2.2674 -3.5324 2.0418 34 1 3.3129 -3.8444 3.4592 35 1 6.5240 -5.1352 2.4211 36 1 7.5283 -3.6376 2.2105 37 1 8.4823 -3.3396 -0.0667 38 1 8.8267 -4.9769 0.5411 39 1 10.2375 -4.5495 -1.7151 40 1 12.6696 -4.8775 -3.9772 41 1 6.6924 -2.3643 0.0856 42 1 5.3186 -3.2977 -0.6475 43 1 5.6930 -2.2783 3.3820 44 1 5.7596 -1.2996 1.8788 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484789332.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:30 Heat of formation + Delta-G solvation = -160.456579 kcal Electronic energy + Delta-G solvation = -31019.771093 eV Core-core repulsion = 26223.903769 eV Total energy + Delta-G solvation = -4795.867324 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.149 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.63132 -47.62552 -41.36852 -40.03680 -38.35406 -37.24025 -35.04993 -33.86255 -32.15120 -31.51631 -31.18343 -30.14792 -27.18310 -26.11344 -25.51069 -24.82877 -22.85208 -21.92293 -21.19082 -19.72775 -19.19414 -19.14399 -18.19979 -17.86937 -17.56884 -16.66744 -16.34363 -16.04220 -15.85295 -15.73591 -15.24035 -14.96947 -14.74063 -14.51431 -14.37315 -14.26168 -13.92724 -13.82884 -13.69210 -13.62820 -13.11364 -13.03127 -12.92727 -12.85449 -12.58123 -12.44472 -12.21559 -12.12121 -11.88269 -11.52396 -11.39643 -11.10016 -10.96181 -10.79057 -10.49199 -10.37292 -10.18990 -9.94117 -9.47503 -9.44723 -8.76691 -8.17349 -7.93387 -6.39382 -3.79852 1.59570 2.06024 3.19484 3.23297 3.27808 3.32076 3.34803 3.45909 3.79720 3.93216 3.98547 4.06074 4.06502 4.16791 4.27018 4.30876 4.49213 4.83526 4.93888 4.98982 5.06574 5.07600 5.20038 5.22174 5.24067 5.26986 5.32313 5.38749 5.41379 5.54741 5.64667 5.68902 5.73525 5.81954 5.98392 6.27827 6.52849 6.64745 6.87557 7.17452 7.27890 7.57654 8.08874 8.65190 9.21401 9.57408 10.10330 10.78652 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.014201 B = 0.002335 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.169820 B =11990.709208 C =13280.941108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.281 3.719 3 F -0.181 7.181 4 F -0.184 7.184 5 C 0.490 3.510 6 O -0.503 6.503 7 N -0.697 5.697 8 C 0.108 3.892 9 H 0.114 0.886 10 C 0.039 3.961 11 O -0.330 6.330 12 C 0.079 3.921 13 C -0.010 4.010 14 N -0.427 5.427 15 C 0.007 3.993 16 C 0.446 3.554 17 O -0.572 6.572 18 N -0.568 5.568 19 C -0.297 4.297 20 H 0.102 0.898 21 C 0.021 3.979 22 N -0.904 5.904 23 Si 0.929 3.071 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.269 1.269 27 C -0.001 4.001 28 C -0.146 4.146 29 H 0.101 0.899 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.413 0.587 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.059 0.941 38 H 0.089 0.911 39 H 0.391 0.609 40 H 0.271 0.729 41 H 0.077 0.923 42 H 0.095 0.905 43 H 0.104 0.896 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.447 12.293 15.178 25.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.241 3.759 3 F -0.162 7.162 4 F -0.165 7.165 5 C 0.271 3.729 6 O -0.377 6.377 7 N -0.349 5.349 8 C 0.003 3.997 9 H 0.132 0.868 10 C -0.039 4.039 11 O -0.248 6.248 12 C 0.038 3.962 13 C -0.139 4.139 14 N -0.149 5.149 15 C -0.125 4.125 16 C 0.231 3.769 17 O -0.455 6.455 18 N -0.206 5.206 19 C -0.426 4.426 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.546 5.546 23 Si 0.756 3.244 24 H -0.205 1.205 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.131 4.131 28 C -0.184 4.184 29 H 0.119 0.881 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.249 0.751 33 H 0.108 0.892 34 H 0.095 0.905 35 H 0.111 0.889 36 H 0.096 0.904 37 H 0.077 0.923 38 H 0.107 0.893 39 H 0.224 0.776 40 H 0.081 0.919 41 H 0.095 0.905 42 H 0.113 0.887 43 H 0.122 0.878 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -17.637 11.130 15.003 25.691 hybrid contribution 1.663 0.914 -0.788 2.054 sum -15.974 12.044 14.215 24.542 Atomic orbital electron populations 1.22652 0.88608 1.06526 1.06269 1.21340 0.96040 0.76191 0.82291 1.93101 1.90515 1.36065 1.96566 1.93119 1.90377 1.80503 1.52464 1.20786 0.82570 0.80203 0.89311 1.90784 1.55579 1.58417 1.32950 1.45923 1.17070 1.54452 1.17476 1.22745 0.94232 0.93783 0.88928 0.86797 1.23942 0.94405 0.89531 0.96029 1.88502 1.21673 1.46559 1.68074 1.22676 0.86489 0.90654 0.96357 1.24265 0.95607 1.00501 0.93551 1.68907 1.10850 1.30767 1.04348 1.22540 0.91641 1.00514 0.97849 1.19659 0.84554 0.85329 0.87325 1.90542 1.35891 1.50878 1.68163 1.41871 1.08411 1.56479 1.13805 1.19696 0.96018 1.38094 0.88813 0.87975 1.25241 0.94859 0.97643 1.00268 1.69607 0.99815 1.47009 1.38175 0.85867 0.77514 0.79075 0.81902 1.20451 1.20950 1.19402 1.24324 0.98281 0.93014 0.97438 1.23335 0.94120 0.98272 1.02692 0.88054 0.88896 0.88640 0.75090 0.89157 0.90475 0.88872 0.90426 0.92318 0.89299 0.77600 0.91948 0.90474 0.88687 0.87803 0.88639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.16 8.92 37.16 0.33 -0.83 16 2 C 0.28 2.43 2.47 -27.88 -0.07 2.36 16 3 F -0.18 -1.71 17.05 2.25 0.04 -1.68 16 4 F -0.18 -1.81 16.51 2.25 0.04 -1.77 16 5 C 0.49 4.66 7.23 -10.99 -0.08 4.58 16 6 O -0.50 -5.67 15.85 5.56 0.09 -5.59 16 7 N -0.70 -6.00 5.17 -51.50 -0.27 -6.26 16 8 C 0.11 0.84 3.37 -65.55 -0.22 0.62 16 9 H 0.11 0.80 7.74 -51.93 -0.40 0.40 16 10 C 0.04 0.36 7.49 38.22 0.29 0.65 16 11 O -0.33 -4.29 11.17 -35.23 -0.39 -4.68 16 12 C 0.08 0.88 1.74 -90.48 -0.16 0.72 16 13 C -0.01 -0.12 7.20 -7.16 -0.05 -0.17 16 14 N -0.43 -7.21 5.82 -245.80 -1.43 -8.64 16 15 C 0.01 0.12 5.29 -4.97 -0.03 0.09 16 16 C 0.45 10.79 7.85 -10.99 -0.09 10.70 16 17 O -0.57 -16.19 16.01 5.54 0.09 -16.10 16 18 N -0.57 -14.58 5.29 -10.96 -0.06 -14.64 16 19 C -0.30 -8.39 9.68 -14.94 -0.14 -8.54 16 20 H 0.10 3.05 7.16 -52.48 -0.38 2.67 16 21 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 22 N -0.90 -24.75 13.05 55.50 0.72 -24.03 16 23 Si 0.93 21.31 29.55 -169.99 -5.02 16.28 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 27 C 0.00 -0.02 7.21 -7.09 -0.05 -0.07 16 28 C -0.15 -1.03 5.97 -25.07 -0.15 -1.18 16 29 H 0.10 0.61 7.87 -51.93 -0.41 0.20 16 30 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.41 3.40 8.18 -40.82 -0.33 3.07 16 33 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.08 0.73 7.89 -51.93 -0.41 0.32 16 37 H 0.06 0.89 7.30 -51.93 -0.38 0.51 16 38 H 0.09 1.42 8.08 -51.93 -0.42 1.00 16 39 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 40 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 41 H 0.08 0.91 7.22 -51.93 -0.38 0.53 16 42 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 43 H 0.10 0.54 8.12 -51.93 -0.42 0.12 16 44 H 0.10 0.58 7.81 -51.93 -0.41 0.18 16 LS Contribution 379.15 15.07 5.71 5.71 Total: -1.00 -35.25 379.15 -6.92 -42.17 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -5.93 Total: 9.81 kcal Atomic # 6 Polarization: 9.93 SS G_CDS: -0.51 Total: 9.41 kcal Atomic # 7 Polarization: -52.53 SS G_CDS: -1.03 Total: -53.57 kcal Atomic # 8 Polarization: -26.16 SS G_CDS: -0.22 Total: -26.37 kcal Atomic # 9 Polarization: -3.52 SS G_CDS: 0.08 Total: -3.45 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.25 -6.92 -42.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484789332.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.290 kcal (2) G-P(sol) polarization free energy of solvation -35.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds