Wall clock time and date at job start Wed Apr 1 2020 05:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 F 1.39898 * 109.46990 * 2 1 4 4 F 1.39901 * 109.47218 * 239.99654 * 2 1 3 5 5 C 1.50696 * 109.46911 * 119.99585 * 2 1 3 6 6 O 1.21282 * 120.00651 * 335.00357 * 5 2 1 7 7 N 1.34782 * 119.99824 * 155.00033 * 5 2 1 8 8 C 1.46506 * 120.00010 * 180.02562 * 7 5 2 9 9 H 1.09003 * 111.00294 * 322.28381 * 8 7 5 10 10 C 1.55014 * 111.10626 * 86.45030 * 8 7 5 11 11 O 1.43907 * 105.17659 * 81.91311 * 10 8 7 12 12 C 1.42409 * 109.56874 * 24.28955 * 11 10 8 13 13 C 1.52731 * 116.09576 * 129.74186 * 12 11 10 14 14 N 1.47622 * 87.80902 * 90.81792 * 13 12 11 15 15 C 1.46910 * 110.99603 * 138.09024 * 14 13 12 16 16 C 1.50700 * 109.46829 * 169.99782 * 15 14 13 17 17 O 1.21298 * 120.00185 * 0.02562 * 16 15 14 18 18 N 1.34777 * 120.00040 * 179.97438 * 16 15 14 19 19 C 1.37094 * 120.00263 * 180.02562 * 18 16 15 20 20 H 1.08003 * 120.00134 * 0.02562 * 19 18 16 21 21 C 1.38947 * 119.99982 * 180.02562 * 19 18 16 22 22 N 1.31408 * 120.00247 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99966 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47396 * 90.00060 * 23 21 19 25 25 H 1.48503 * 109.47503 * 209.99995 * 23 21 19 26 26 H 1.48504 * 109.47293 * 330.00191 * 23 21 19 27 27 C 1.47622 * 88.00116 * 26.33118 * 14 13 12 28 28 C 1.53670 * 108.51355 * 358.09577 * 12 11 10 29 29 H 1.08998 * 109.47201 * 300.00578 * 1 2 3 30 30 H 1.08998 * 109.46740 * 60.00057 * 1 2 3 31 31 H 1.08998 * 109.46953 * 180.02562 * 1 2 3 32 32 H 0.96992 * 120.00225 * 0.02562 * 7 5 2 33 33 H 1.08998 * 110.30310 * 322.98581 * 10 8 7 34 34 H 1.08997 * 110.38319 * 200.87660 * 10 8 7 35 35 H 1.09002 * 113.50966 * 336.06787 * 13 12 11 36 36 H 1.09001 * 113.50651 * 205.56796 * 13 12 11 37 37 H 1.09003 * 109.47066 * 289.99624 * 15 14 13 38 38 H 1.08998 * 109.47133 * 50.00147 * 15 14 13 39 39 H 0.97007 * 119.99591 * 0.02562 * 18 16 15 40 40 H 0.96997 * 120.00414 * 179.97438 * 22 21 19 41 41 H 1.09003 * 113.50408 * 88.35275 * 27 14 13 42 42 H 1.08999 * 113.50598 * 218.84930 * 27 14 13 43 43 H 1.09001 * 110.92911 * 97.28619 * 28 12 11 44 44 H 1.08998 * 110.92863 * 220.94281 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9964 -0.6596 -1.1422 5 6 2.0323 -0.7103 1.2305 6 8 1.3370 -0.7704 2.2224 7 7 3.2543 -1.2789 1.2287 8 6 3.7424 -1.9699 2.4248 9 1 3.4327 -1.4489 3.3308 10 6 3.2769 -3.4484 2.4443 11 8 4.2102 -4.1484 1.6019 12 6 5.4381 -3.4291 1.5498 13 6 6.7032 -4.2384 1.8280 14 7 6.7874 -4.4989 0.3774 15 6 8.1726 -4.3842 -0.0984 16 6 8.2607 -4.8915 -1.5148 17 8 7.2673 -5.3071 -2.0731 18 7 9.4431 -4.8823 -2.1615 19 6 9.5232 -5.3432 -3.4501 20 1 8.6387 -5.7134 -3.9473 21 6 10.7424 -5.3342 -4.1167 22 7 11.8185 -4.8835 -3.5120 23 14 10.8514 -5.9616 -5.8728 24 1 10.6100 -4.8397 -6.8152 25 1 12.2030 -6.5279 -6.1132 26 1 9.8278 -7.0162 -6.0862 27 6 6.0476 -3.2399 0.1607 28 6 5.2867 -2.1445 2.3795 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.8106 -1.2306 0.4357 33 1 2.2674 -3.5324 2.0418 34 1 3.3129 -3.8444 3.4592 35 1 6.5240 -5.1352 2.4211 36 1 7.5283 -3.6376 2.2105 37 1 8.4823 -3.3396 -0.0667 38 1 8.8267 -4.9769 0.5411 39 1 10.2375 -4.5495 -1.7151 40 1 12.6696 -4.8775 -3.9772 41 1 6.6924 -2.3643 0.0856 42 1 5.3186 -3.2977 -0.6475 43 1 5.6930 -2.2783 3.3820 44 1 5.7596 -1.2996 1.8788 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484789332.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:29 Heat of formation + Delta-G solvation = -190.254381 kcal Electronic energy + Delta-G solvation = -31021.063222 eV Core-core repulsion = 26223.903769 eV Total energy + Delta-G solvation = -4797.159453 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.149 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.35476 -48.35842 -42.25251 -40.89539 -39.93357 -38.49236 -35.94744 -35.80171 -33.30993 -32.79155 -32.26381 -31.21726 -28.34978 -27.09102 -26.59001 -26.17515 -24.01284 -22.70200 -21.91031 -20.99164 -20.59187 -19.89998 -19.85051 -18.91531 -18.31101 -17.81801 -17.33373 -17.26990 -16.82602 -16.67124 -16.49504 -16.12163 -16.04778 -15.68266 -15.54498 -15.25551 -15.16965 -14.81328 -14.66817 -14.56595 -14.32653 -13.92501 -13.70159 -13.58059 -13.55472 -13.42208 -13.34258 -13.13560 -12.96387 -12.86158 -12.64978 -12.43481 -12.38458 -12.14725 -12.02301 -11.77633 -11.50796 -11.22674 -10.73725 -10.38020 -10.25099 -10.01164 -9.65833 -8.47293 -5.95761 0.86077 1.36790 1.39963 1.40317 1.53136 2.06229 2.28080 2.50921 2.55533 2.83977 2.95102 3.15069 3.19381 3.33459 3.35929 3.41731 3.47854 3.54949 3.81940 4.09089 4.17004 4.26089 4.35179 4.44602 4.46855 4.52474 4.54713 4.55765 4.60699 4.63794 4.72301 4.83037 4.83375 4.85978 4.92197 5.14387 5.39529 5.42659 5.87389 5.94994 6.05894 6.17430 6.57066 6.61374 7.13412 7.56909 8.14521 8.70204 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.014201 B = 0.002335 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.169820 B =11990.709208 C =13280.941108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.278 3.722 3 F -0.186 7.186 4 F -0.193 7.193 5 C 0.490 3.510 6 O -0.522 6.522 7 N -0.696 5.696 8 C 0.109 3.891 9 H 0.129 0.871 10 C 0.035 3.965 11 O -0.366 6.366 12 C 0.089 3.911 13 C -0.002 4.002 14 N -0.478 5.478 15 C 0.022 3.978 16 C 0.440 3.560 17 O -0.622 6.622 18 N -0.575 5.575 19 C -0.333 4.333 20 H 0.074 0.926 21 C -0.012 4.012 22 N -0.920 5.920 23 Si 0.991 3.009 24 H -0.270 1.270 25 H -0.269 1.269 26 H -0.276 1.276 27 C -0.008 4.008 28 C -0.130 4.130 29 H 0.105 0.895 30 H 0.107 0.893 31 H 0.098 0.902 32 H 0.413 0.587 33 H 0.077 0.923 34 H 0.098 0.902 35 H 0.089 0.911 36 H 0.114 0.886 37 H 0.090 0.910 38 H 0.109 0.891 39 H 0.397 0.603 40 H 0.278 0.722 41 H 0.102 0.898 42 H 0.059 0.941 43 H 0.135 0.865 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.708 13.615 16.746 26.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.238 3.762 3 F -0.167 7.167 4 F -0.174 7.174 5 C 0.271 3.729 6 O -0.398 6.398 7 N -0.347 5.347 8 C 0.005 3.995 9 H 0.147 0.853 10 C -0.042 4.042 11 O -0.285 6.285 12 C 0.048 3.952 13 C -0.130 4.130 14 N -0.200 5.200 15 C -0.110 4.110 16 C 0.227 3.773 17 O -0.508 6.508 18 N -0.213 5.213 19 C -0.463 4.463 20 H 0.092 0.908 21 C -0.211 4.211 22 N -0.561 5.561 23 Si 0.814 3.186 24 H -0.195 1.195 25 H -0.193 1.193 26 H -0.201 1.201 27 C -0.137 4.137 28 C -0.168 4.168 29 H 0.124 0.876 30 H 0.126 0.874 31 H 0.117 0.883 32 H 0.250 0.750 33 H 0.095 0.905 34 H 0.116 0.884 35 H 0.107 0.893 36 H 0.132 0.868 37 H 0.108 0.892 38 H 0.127 0.873 39 H 0.231 0.769 40 H 0.087 0.913 41 H 0.120 0.880 42 H 0.077 0.923 43 H 0.153 0.847 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -16.870 12.468 16.598 26.750 hybrid contribution 1.389 0.461 -1.274 1.941 sum -15.481 12.930 15.324 25.331 Atomic orbital electron populations 1.22706 0.86811 1.07101 1.07252 1.21546 0.97283 0.75726 0.81627 1.93087 1.90714 1.36380 1.96552 1.93101 1.90638 1.80724 1.52972 1.20911 0.82629 0.80100 0.89259 1.90770 1.56086 1.59352 1.33610 1.46027 1.16814 1.53976 1.17907 1.22842 0.94903 0.92702 0.89020 0.85304 1.24081 0.93172 0.90587 0.96355 1.88469 1.22970 1.48012 1.69062 1.22593 0.85658 0.92161 0.94781 1.24350 0.97081 1.01142 0.90456 1.68827 1.10286 1.33036 1.07880 1.22408 0.93265 1.02136 0.93166 1.20902 0.83133 0.83607 0.89640 1.90504 1.37429 1.52746 1.70100 1.41938 1.09279 1.56805 1.13318 1.19616 0.95807 1.40335 0.90552 0.90800 1.25995 0.94097 0.97184 1.03869 1.69656 1.00162 1.46746 1.39517 0.84963 0.77812 0.78505 0.77270 1.19526 1.19320 1.20080 1.24427 0.98110 0.92879 0.98276 1.23356 0.93436 0.96334 1.03695 0.87600 0.87398 0.88280 0.75002 0.90499 0.88405 0.89256 0.86785 0.89196 0.87327 0.76921 0.91268 0.88044 0.92283 0.84661 0.86987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.15 8.92 71.98 0.64 -1.51 16 2 C 0.28 4.67 2.47 29.85 0.07 4.74 16 3 F -0.19 -3.39 17.05 44.97 0.77 -2.62 16 4 F -0.19 -3.82 16.51 44.97 0.74 -3.08 16 5 C 0.49 8.94 7.23 87.65 0.63 9.58 16 6 O -0.52 -11.30 15.85 -3.03 -0.05 -11.35 16 7 N -0.70 -11.18 5.17 -435.24 -2.25 -13.43 16 8 C 0.11 1.46 3.37 46.53 0.16 1.61 16 9 H 0.13 1.42 7.74 -2.39 -0.02 1.40 16 10 C 0.04 0.61 7.49 72.67 0.54 1.16 16 11 O -0.37 -9.32 11.17 -148.98 -1.66 -10.98 16 12 C 0.09 1.80 1.74 -10.70 -0.02 1.78 16 13 C 0.00 -0.04 7.20 83.75 0.60 0.56 16 14 N -0.48 -15.75 5.82 -932.37 -5.43 -21.18 16 15 C 0.02 0.74 5.29 85.56 0.45 1.20 16 16 C 0.44 21.66 7.85 87.66 0.69 22.35 16 17 O -0.62 -36.72 16.01 -3.08 -0.05 -36.77 16 18 N -0.58 -30.06 5.29 -306.98 -1.62 -31.68 16 19 C -0.33 -19.39 9.68 84.04 0.81 -18.58 16 20 H 0.07 4.63 7.16 -2.91 -0.02 4.61 16 21 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 22 N -0.92 -49.81 13.05 21.66 0.28 -49.53 16 23 Si 0.99 43.63 29.55 68.60 2.03 45.66 16 24 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 25 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 26 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 27 C -0.01 -0.21 7.21 83.79 0.60 0.39 16 28 C -0.13 -1.36 5.97 31.67 0.19 -1.17 16 29 H 0.11 1.17 7.87 -2.39 -0.02 1.15 16 30 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.41 6.53 8.18 -92.71 -0.76 5.77 16 33 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.11 1.60 7.89 -2.39 -0.02 1.58 16 37 H 0.09 2.47 7.30 -2.39 -0.02 2.45 16 38 H 0.11 3.23 8.08 -2.39 -0.02 3.21 16 39 H 0.40 19.36 7.90 -92.70 -0.73 18.62 16 40 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 41 H 0.10 2.16 7.22 -2.39 -0.02 2.15 16 42 H 0.06 1.98 8.14 -2.39 -0.02 1.97 16 43 H 0.14 0.67 8.12 -2.39 -0.02 0.65 16 44 H 0.11 0.88 7.81 -2.39 -0.02 0.86 16 Total: -1.00 -79.63 379.15 -1.82 -81.45 By element: Atomic # 1 Polarization: 32.01 SS G_CDS: -0.43 Total: 31.59 kcal Atomic # 6 Polarization: 16.08 SS G_CDS: 5.85 Total: 21.93 kcal Atomic # 7 Polarization: -106.80 SS G_CDS: -9.02 Total: -115.82 kcal Atomic # 8 Polarization: -57.34 SS G_CDS: -1.76 Total: -59.10 kcal Atomic # 9 Polarization: -7.21 SS G_CDS: 1.51 Total: -5.70 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -79.63 -1.82 -81.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484789332.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.807 kcal (2) G-P(sol) polarization free energy of solvation -79.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds