Wall clock time and date at job start Wed Apr 1 2020 04:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47086 * 2 1 4 4 N 1.46497 * 109.47102 * 179.97438 * 3 2 1 5 5 C 1.36933 * 119.99988 * 275.30988 * 4 3 2 6 6 H 1.08001 * 119.99995 * 37.58504 * 5 4 3 7 7 C 1.38812 * 120.00022 * 217.57686 * 5 4 3 8 8 N 1.31621 * 119.99916 * 21.42934 * 7 5 4 9 9 Si 1.86791 * 120.00214 * 201.42632 * 7 5 4 10 10 H 1.48498 * 109.47166 * 60.00142 * 9 7 5 11 11 H 1.48501 * 109.47349 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47351 * 300.00312 * 9 7 5 13 13 C 1.46504 * 119.99703 * 95.31246 * 4 3 2 14 14 C 1.53002 * 109.47079 * 269.99853 * 13 4 3 15 15 N 1.46494 * 109.47191 * 180.02562 * 14 13 4 16 16 C 1.34773 * 120.00195 * 179.97438 * 15 14 13 17 17 O 1.21282 * 120.00131 * 0.02562 * 16 15 14 18 18 C 1.50701 * 120.00263 * 180.02562 * 16 15 14 19 19 C 1.50706 * 109.47362 * 180.02562 * 18 16 15 20 20 N 1.28730 * 121.08393 * 89.97189 * 19 18 16 21 21 S 1.69386 * 108.98535 * 180.02562 * 20 19 18 22 22 C 1.76520 * 96.11934 * 0.02562 * 21 20 19 23 23 C 1.38780 * 133.55833 * 180.02562 * 22 21 20 24 24 C 1.36714 * 119.75536 * 179.97438 * 23 22 21 25 25 C 1.38973 * 120.15745 * 0.02562 * 24 23 22 26 26 C 1.36042 * 121.15466 * 359.97438 * 25 24 23 27 27 C 1.40806 * 105.51671 * 0.22465 * 22 21 20 28 28 H 1.08993 * 109.47317 * 299.99880 * 1 2 3 29 29 H 1.09002 * 109.47267 * 60.00130 * 1 2 3 30 30 H 1.09001 * 109.47064 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46694 * 240.00531 * 2 1 3 32 32 H 1.09001 * 109.47131 * 120.00406 * 2 1 3 33 33 H 1.08999 * 109.46560 * 60.00014 * 3 2 1 34 34 H 1.09002 * 109.46962 * 300.00057 * 3 2 1 35 35 H 0.96996 * 120.00588 * 179.97438 * 8 7 5 36 36 H 1.09001 * 109.47135 * 150.00125 * 13 4 3 37 37 H 1.09001 * 109.47390 * 29.99614 * 13 4 3 38 38 H 1.09001 * 109.46915 * 60.00138 * 14 13 4 39 39 H 1.09001 * 109.46814 * 300.00113 * 14 13 4 40 40 H 0.96996 * 120.00055 * 0.02562 * 15 14 13 41 41 H 1.08995 * 109.47201 * 59.99962 * 18 16 15 42 42 H 1.09001 * 109.47133 * 300.00001 * 18 16 15 43 43 H 1.07997 * 120.12151 * 359.96907 * 23 22 21 44 44 H 1.08000 * 119.92722 * 180.02562 * 24 23 22 45 45 H 1.07997 * 119.42462 * 180.02562 * 25 24 23 46 46 H 1.08000 * 119.89790 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1891 1.3330 1.1817 6 1 3.8169 0.6875 1.9635 7 6 5.3612 2.0514 1.3741 8 7 5.6019 3.1240 0.6503 9 14 6.5967 1.4961 2.6603 10 1 7.0656 0.1247 2.3366 11 1 7.7542 2.4263 2.6690 12 1 5.9523 1.4959 3.9982 13 6 4.2380 1.5598 -1.2624 14 6 4.4932 0.1643 -1.8354 15 7 5.2267 0.2815 -3.0981 16 6 5.5645 -0.8267 -3.7867 17 8 5.2608 -1.9211 -3.3612 18 6 6.3195 -0.7062 -5.0853 19 6 6.5708 -2.0807 -5.6498 20 7 5.7273 -2.6357 -6.4483 21 16 6.3105 -4.1631 -6.8911 22 6 7.7991 -4.0774 -5.9463 23 6 8.8631 -4.9480 -5.7569 24 6 9.8994 -4.5859 -4.9421 25 6 9.8879 -3.3508 -4.3050 26 6 8.8561 -2.4807 -4.4752 27 6 7.7671 -2.8238 -5.3059 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 6.4207 3.6263 0.7849 36 1 5.1903 2.0594 -1.0848 37 1 3.6491 2.1416 -1.9716 38 1 3.5409 -0.3353 -2.0131 39 1 5.0820 -0.4175 -1.1263 40 1 5.4699 1.1567 -3.4383 41 1 7.2717 -0.2066 -4.9070 42 1 5.7313 -0.1244 -5.7949 43 1 8.8723 -5.9081 -6.2513 44 1 10.7290 -5.2611 -4.7930 45 1 10.7129 -3.0767 -3.6642 46 1 8.8683 -1.5259 -3.9705 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493334501.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:30 Heat of formation + Delta-G solvation = 23.217500 kcal Electronic energy + Delta-G solvation = -27394.460648 eV Core-core repulsion = 23603.540430 eV Total energy + Delta-G solvation = -3790.920217 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.36708 -39.15656 -36.95141 -36.40785 -34.24721 -32.89908 -31.68454 -30.99747 -30.68702 -30.24719 -27.82494 -25.58095 -24.02744 -23.39773 -23.00075 -21.31050 -20.75788 -20.22770 -19.67621 -18.72259 -17.19536 -16.62122 -16.45302 -15.93238 -15.47684 -15.29967 -15.08299 -14.85414 -14.43893 -14.35650 -14.15958 -13.96334 -13.53828 -13.30165 -13.05410 -12.89369 -12.76184 -12.41266 -12.21393 -11.99024 -11.85235 -11.59016 -11.50304 -11.19674 -10.97436 -10.95872 -10.75555 -10.67029 -10.47441 -10.37724 -10.11619 -10.08013 -9.91576 -9.78388 -9.54567 -9.18620 -8.61397 -8.47838 -8.04870 -6.64906 -5.86884 -3.45435 0.30086 0.93484 1.25122 1.63248 1.90009 2.86096 3.31193 3.34159 3.38533 3.42905 3.59638 4.06726 4.25769 4.43496 4.61355 4.71166 4.94356 5.01151 5.04356 5.06616 5.21455 5.24324 5.39006 5.46930 5.60077 5.66529 5.75849 5.78653 5.92939 6.01282 6.10157 6.12046 6.19773 6.27422 6.39700 6.41673 6.52177 6.52626 6.61543 6.65242 6.82757 6.96596 6.98921 7.17220 7.50148 7.77140 7.84687 8.44350 8.50745 9.11496 9.73277 10.31364 11.13212 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.011052 B = 0.002758 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2532.868082 B =10150.716815 C =11741.607903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.145 4.145 3 C 0.148 3.852 4 N -0.579 5.579 5 C -0.261 4.261 6 H 0.061 0.939 7 C 0.015 3.985 8 N -0.887 5.887 9 Si 0.896 3.104 10 H -0.282 1.282 11 H -0.290 1.290 12 H -0.280 1.280 13 C 0.138 3.862 14 C 0.098 3.902 15 N -0.717 5.717 16 C 0.513 3.487 17 O -0.537 6.537 18 C -0.083 4.083 19 C 0.185 3.815 20 N -0.430 5.430 21 S 0.181 5.819 22 C -0.134 4.134 23 C -0.084 4.084 24 C -0.083 4.083 25 C -0.124 4.124 26 C -0.046 4.046 27 C -0.120 4.120 28 H 0.049 0.951 29 H 0.046 0.954 30 H 0.043 0.957 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.046 0.954 34 H 0.034 0.966 35 H 0.255 0.745 36 H 0.099 0.901 37 H 0.029 0.971 38 H 0.052 0.948 39 H 0.064 0.936 40 H 0.399 0.601 41 H 0.117 0.883 42 H 0.118 0.882 43 H 0.132 0.868 44 H 0.135 0.865 45 H 0.133 0.867 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.335 -9.369 -14.697 18.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.021 3.979 4 N -0.299 5.299 5 C -0.391 4.391 6 H 0.079 0.921 7 C -0.186 4.186 8 N -0.530 5.530 9 Si 0.725 3.275 10 H -0.208 1.208 11 H -0.216 1.216 12 H -0.206 1.206 13 C 0.010 3.990 14 C -0.027 4.027 15 N -0.368 5.368 16 C 0.296 3.704 17 O -0.414 6.414 18 C -0.128 4.128 19 C -0.005 4.005 20 N -0.241 5.241 21 S 0.336 5.664 22 C -0.254 4.254 23 C -0.106 4.106 24 C -0.105 4.105 25 C -0.144 4.144 26 C -0.068 4.068 27 C -0.131 4.131 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.053 0.947 35 H 0.065 0.935 36 H 0.117 0.883 37 H 0.047 0.953 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.232 0.768 41 H 0.135 0.865 42 H 0.136 0.864 43 H 0.150 0.850 44 H 0.152 0.848 45 H 0.151 0.849 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 5.421 -10.699 -15.800 19.837 hybrid contribution 1.982 0.642 1.612 2.634 sum 7.403 -10.057 -14.189 18.901 Atomic orbital electron populations 1.21721 0.97328 1.00418 1.00997 1.22188 0.93833 1.00936 1.01566 1.20940 0.85031 0.92964 0.98930 1.43595 0.99443 1.84794 1.02067 1.18986 1.05720 1.20440 0.93960 0.92136 1.25167 1.00791 0.94513 0.98107 1.69985 1.25743 1.14707 1.42517 0.86477 0.81010 0.78266 0.81712 1.20799 1.21555 1.20598 1.21063 1.00339 0.91129 0.86442 1.22494 0.94852 1.02848 0.82549 1.46074 1.57842 1.08220 1.24684 1.20074 0.80153 0.85067 0.85078 1.90737 1.54550 1.26561 1.69554 1.20553 1.03544 0.92073 0.96613 1.21833 0.89247 0.96494 0.92954 1.75705 1.25270 1.05249 1.17855 1.84745 1.11791 1.19174 1.50653 1.23482 1.00862 0.98163 1.02886 1.19969 0.92176 0.98644 0.99848 1.21053 0.97821 0.96468 0.95201 1.20785 0.98977 0.94208 1.00472 1.20735 0.91160 1.00050 0.94863 1.20103 0.96723 0.94027 1.02258 0.93189 0.93465 0.93814 0.92960 0.92372 0.93565 0.94733 0.93466 0.88345 0.95281 0.92990 0.91722 0.76785 0.86464 0.86407 0.84963 0.84752 0.84891 0.84901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.91 37.16 0.37 -1.84 16 2 C -0.15 -2.68 6.23 -26.73 -0.17 -2.85 16 3 C 0.15 3.05 5.72 -4.04 -0.02 3.03 16 4 N -0.58 -13.78 2.43 -173.23 -0.42 -14.20 16 5 C -0.26 -6.89 9.45 -15.06 -0.14 -7.03 16 6 H 0.06 1.62 7.92 -52.49 -0.42 1.20 16 7 C 0.01 0.39 4.95 -17.43 -0.09 0.30 16 8 N -0.89 -24.09 11.47 55.49 0.64 -23.45 16 9 Si 0.90 20.94 29.60 -169.99 -5.03 15.91 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 C 0.14 2.97 5.45 -4.04 -0.02 2.94 16 14 C 0.10 1.93 6.00 -4.04 -0.02 1.91 16 15 N -0.72 -11.28 5.56 -60.30 -0.33 -11.61 16 16 C 0.51 8.26 7.82 -10.99 -0.09 8.18 16 17 O -0.54 -11.17 16.03 5.56 0.09 -11.08 16 18 C -0.08 -0.97 5.97 -29.03 -0.17 -1.14 16 19 C 0.19 2.59 5.37 -81.23 -0.44 2.15 16 20 N -0.43 -6.54 11.84 34.00 0.40 -6.14 16 21 S 0.18 2.37 23.86 -107.50 -2.56 -0.20 16 22 C -0.13 -1.66 6.71 -38.41 -0.26 -1.92 16 23 C -0.08 -0.80 10.02 -39.93 -0.40 -1.21 16 24 C -0.08 -0.68 10.00 -39.86 -0.40 -1.08 16 25 C -0.12 -1.11 9.92 -40.10 -0.40 -1.51 16 26 C -0.05 -0.50 9.72 -39.25 -0.38 -0.88 16 27 C -0.12 -1.56 6.05 -105.14 -0.64 -2.20 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 1.00 6.64 -51.93 -0.34 0.65 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 34 H 0.03 0.67 7.83 -51.93 -0.41 0.26 16 35 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 36 H 0.10 2.36 5.52 -51.93 -0.29 2.07 16 37 H 0.03 0.58 7.86 -51.93 -0.41 0.18 16 38 H 0.05 1.08 6.64 -51.93 -0.34 0.73 16 39 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 40 H 0.40 5.02 8.47 -40.82 -0.35 4.68 16 41 H 0.12 0.97 7.54 -51.93 -0.39 0.58 16 42 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 44 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 45 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 46 H 0.13 1.23 7.64 -52.49 -0.40 0.83 16 LS Contribution 396.91 15.07 5.98 5.98 Total: -1.00 -32.89 396.91 -11.21 -44.10 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -6.70 Total: 3.85 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -3.26 Total: -3.17 kcal Atomic # 7 Polarization: -55.68 SS G_CDS: 0.28 Total: -55.40 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.09 Total: -11.08 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.03 Total: 15.91 kcal Atomic # 16 Polarization: 2.37 SS G_CDS: -2.56 Total: -0.20 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.89 -11.21 -44.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493334501.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.319 kcal (2) G-P(sol) polarization free energy of solvation -32.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds